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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    28601 5y5s:1 (1.9) BS01 CA ? GO:0005515 ... D2Z0P2 29618814
    28602 5y5s:3 (1.9) BS03 CA ? GO:0005515 ... D2Z0P2 29618814
    28603 5y5s:5 (1.9) BS02 CA ? GO:0005515 ... D2Z0P2 29618814
    28604 5y5s:7 (1.9) BS03 CA ? GO:0005515 ... D2Z0P2 29618814
    28605 5y5s:9 (1.9) BS01 CA ? GO:0005515 ... D2Z0P2 29618814
    28606 5y5s:A (1.9) BS02 CA ? GO:0005515 ... D2Z0P2 29618814
    28607 5y5s:D (1.9) BS02 CA ? GO:0005515 ... D2Z0P2 29618814
    28608 5y5s:F (1.9) BS02 CA ? GO:0005515 ... D2Z0P2 29618814
    28609 5y5s:I (1.9) BS02 CA ? GO:0005515 ... D2Z0P2 29618814
    28610 5y5s:K (1.9) BS01 CA ? GO:0005515 ... D2Z0P2 29618814
    28611 5y5s:O (1.9) BS02 CA ? GO:0005515 ... D2Z0P2 29618814
    28612 5y5s:Q (1.9) BS03 CA ? GO:0005515 ... D2Z0P2 29618814
    28613 5y5s:S (1.9) BS04 CA ? GO:0005515 ... D2Z0P2 29618814
    28614 5y5s:U (1.9) BS02 CA ? GO:0005515 ... D2Z0P2 29618814
    28615 5y5s:W (1.9) BS03 CA ? GO:0005515 ... D2Z0P2 29618814
    28616 5y5s:Y (1.9) BS02 CA ? GO:0005515 ... D2Z0P2 29618814
    28617 5y7f:A (1.35) BS02 CA ? GO:0000166 ... A0A2D0TCJ6 28939828
    28618 5y7g:A (3.4) BS04 CA 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    28619 5y7g:A (3.4) BS05 CA 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    28620 5y7g:B (3.4) BS04 CA 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    28621 5y7g:B (3.4) BS05 CA 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    28622 5y7g:C (3.4) BS04 CA 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    28623 5ya6:A (1.5) BS01 CA ? GO:0005198 ... Q58301 30898768
    28624 5ya6:B (1.5) BS01 CA ? GO:0005198 ... Q58301 30898768
    28625 5yem:A (1.49) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    28626 5yem:A (1.49) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    28627 5yem:B (1.49) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    28628 5yem:B (1.49) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    28629 5yem:B (1.49) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    28630 5yem:C (1.49) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    28631 5yem:C (1.49) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    28632 5yem:D (1.49) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    28633 5yf0:B (2.25) BS02 CA 2.1.1.22 GO:0008757 ... Q8N4J0 29463897
    28634 5yf1:B (2.399) BS03 CA 2.1.1.22 GO:0008757 ... Q8N4J0 29463897
    28635 5ygm:A (1.6) BS01 CA ? GO:0005537 ... P55915 29025256
    28636 5yj7:C (1.61) BS01 CA 3.2.1.21 GO:0004553 ... A0A452CSM4 33347927
    28637 5yjg:A (2.399) BS02 CA ? N/A Q15063 29754429
    28638 5yjg:A (2.399) BS03 CA ? N/A Q15063 29754429
    28639 5yjg:A (2.399) BS04 CA ? N/A Q15063 29754429
    28640 5ykb:A (2.76) BS01 CA 5.4.99.16 GO:0003824 ... I3NX86 29095151
    28641 5ykb:B (2.76) BS01 CA 5.4.99.16 GO:0003824 ... I3NX86 29095151
    28642 5ykb:C (2.76) BS01 CA 5.4.99.16 GO:0003824 ... I3NX86 29095151
    28643 5ykb:D (2.76) BS01 CA 5.4.99.16 GO:0003824 ... I3NX86 29095151
    28644 5yl1:A (3.12) BS01 CA ? GO:0005198 ... A5H7Q8 30820467
    28645 5yl1:A (3.12) BS02 CA ? GO:0005198 ... A5H7Q8 30820467
    28646 5yl2:A (2.09) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    28647 5yl2:C (2.09) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    28648 5yl4:A (2.64) BS02 CA ? GO:0000226 ... A0A0R4I993 N/A
    28649 5yl4:C (2.64) BS02 CA ? GO:0000226 ... A0A0R4I993 N/A
    28650 5yl7:A (1.4) BS02 CA ? GO:0004252 ... A0A290S6P3 29466378
    28651 5yl7:A (1.4) BS03 CA ? GO:0004252 ... A0A290S6P3 29466378
    28652 5yl7:A (1.4) BS04 CA ? GO:0004252 ... A0A290S6P3 29466378
    28653 5yl7:A (1.4) BS05 CA ? GO:0004252 ... A0A290S6P3 29466378
    28654 5ylj:A (2.7) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    28655 5ylj:C (2.7) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    28656 5yls:A (3.0) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    28657 5yls:C (3.0) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    28658 5yn2:A (2.301) BS01 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    28659 5yn2:A (2.301) BS02 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    28660 5yn2:A (2.301) BS03 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    28661 5yn2:A (2.301) BS04 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    28662 5yn7:A (2.586) BS03 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    28663 5yn7:A (2.586) BS04 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    28664 5yn7:A (2.586) BS05 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    28665 5yn7:A (2.586) BS06 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    28666 5yna:A (1.96) BS03 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    28667 5yna:A (1.96) BS04 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    28668 5yna:A (1.96) BS05 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    28669 5yna:A (1.96) BS06 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    28670 5ync:A (2.32) BS05 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    28671 5ync:A (2.32) BS06 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    28672 5ync:A (2.32) BS07 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    28673 5ync:A (2.32) BS08 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    28674 5ynd:A (2.227) BS03 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    28675 5ynd:A (2.227) BS04 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    28676 5ynd:A (2.227) BS05 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    28677 5ynd:A (2.227) BS06 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    28678 5yne:A (2.199) BS04 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    28679 5yne:A (2.199) BS05 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    28680 5yne:A (2.199) BS06 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    28681 5yne:A (2.199) BS07 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    28682 5ynh:A (2.05) BS06 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    28683 5ynh:A (2.05) BS07 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    28684 5ynh:A (2.05) BS08 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    28685 5ynh:A (2.05) BS09 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    28686 5yot:A (1.98) BS01 CA 3.2.1.21 GO:0000272 ... Q2U8V9 30445155
    28687 5yot:B (1.98) BS01 CA 3.2.1.21 GO:0000272 ... Q2U8V9 30445155
    28688 5yps:A (2.097) BS01 CA ? GO:0000785 ... A0A0W4ZF97 31098304
    28689 5yps:A (2.097) BS02 CA ? GO:0000785 ... A0A0W4ZF97 31098304
    28690 5yps:A (2.097) BS03 CA ? GO:0000785 ... A0A0W4ZF97 31098304
    28691 5yps:B (2.097) BS01 CA ? GO:0000785 ... A0A0W4ZF97 31098304
    28692 5yps:B (2.097) BS02 CA ? GO:0000785 ... A0A0W4ZF97 31098304
    28693 5yps:B (2.097) BS03 CA ? GO:0000785 ... A0A0W4ZF97 31098304
    28694 5yps:C (2.097) BS01 CA ? GO:0000785 ... A0A0W4ZF97 31098304
    28695 5yps:C (2.097) BS02 CA ? GO:0000785 ... A0A0W4ZF97 31098304
    28696 5yps:C (2.097) BS03 CA ? GO:0000785 ... A0A0W4ZF97 31098304
    28697 5yps:D (2.097) BS01 CA ? GO:0000785 ... A0A0W4ZF97 31098304
    28698 5yps:D (2.097) BS02 CA ? GO:0000785 ... A0A0W4ZF97 31098304
    28699 5yps:D (2.097) BS03 CA ? GO:0000785 ... A0A0W4ZF97 31098304
    28700 5yps:E (2.097) BS01 CA ? GO:0000785 ... A0A0W4ZF97 31098304
    28701 5yps:E (2.097) BS02 CA ? GO:0000785 ... A0A0W4ZF97 31098304
    28702 5yps:F (2.097) BS01 CA ? GO:0000785 ... A0A0W4ZF97 31098304
    28703 5yps:F (2.097) BS02 CA ? GO:0000785 ... A0A0W4ZF97 31098304
    28704 5ypu:A (2.0) BS03 CA 3.6.4.- GO:0000287 ... P68135 30254171
    28705 5ypu:C (2.0) BS03 CA 3.6.4.- GO:0000287 ... P68135 30254171
    28706 5yq0:C (1.76) BS01 CA ? GO:0046872 ... Q93I65 29941571
    28707 5yq0:G (1.76) BS01 CA ? GO:0046872 ... Q93I65 29941571
    28708 5yqs:A (2.4) BS06 CA 3.2.1.21 GO:0000272 ... Q2U8V9 30445155
    28709 5yqs:B (2.4) BS07 CA 3.2.1.21 GO:0000272 ... Q2U8V9 30445155
    28710 5yrt:A (1.7) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 29797764
    28711 5yrt:D (1.7) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 29797764
    28712 5yrt:G (1.7) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 29797764
    28713 5yrt:J (1.7) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 29797764
    28714 5yrv:A (1.55) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 29797764
    28715 5yrv:D (1.55) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 29797764
    28716 5yrv:G (1.55) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 29797764
    28717 5yrv:J (1.55) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 29797764
    28718 5ysh:A (1.9) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 29797764
    28719 5ysh:D (1.9) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 29797764
    28720 5ysh:G (1.9) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 29797764
    28721 5ysh:J (1.9) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 29797764
    28722 5yt7:B (1.66) BS02 CA ? GO:0005507 ... P00282 N/A
    28723 5yvk:A (1.292) BS02 CA ? GO:0046872 ... V5TER4 30222239
    28724 5yvk:A (1.292) BS03 CA ? GO:0046872 ... V5TER4 30222239
    28725 5yvl:A (2.059) BS01 CA ? GO:0046872 ... A0A076NBW8 30222239
    28726 5yvl:A (2.059) BS02 CA ? GO:0046872 ... A0A076NBW8 30222239
    28727 5yvl:B (2.059) BS01 CA ? GO:0046872 ... A0A076NBW8 30222239
    28728 5yvl:B (2.059) BS02 CA ? GO:0046872 ... A0A076NBW8 30222239
    28729 5yvl:C (2.059) BS01 CA ? GO:0046872 ... A0A076NBW8 30222239
    28730 5yvl:C (2.059) BS02 CA ? GO:0046872 ... A0A076NBW8 30222239
    28731 5yvl:D (2.059) BS01 CA ? GO:0046872 ... A0A076NBW8 30222239
    28732 5yvl:D (2.059) BS02 CA ? GO:0046872 ... A0A076NBW8 30222239
    28733 5yvp:A (2.051) BS01 CA ? GO:0046872 ... A0A1P8VSI6 30222239
    28734 5yvp:A (2.051) BS02 CA ? GO:0046872 ... A0A1P8VSI6 30222239
    28735 5yvp:B (2.051) BS01 CA ? GO:0046872 ... A0A1P8VSI6 30222239
    28736 5yvp:B (2.051) BS02 CA ? GO:0046872 ... A0A1P8VSI6 30222239
    28737 5yvp:C (2.051) BS01 CA ? GO:0046872 ... A0A1P8VSI6 30222239
    28738 5yvp:C (2.051) BS02 CA ? GO:0046872 ... A0A1P8VSI6 30222239
    28739 5yvp:D (2.051) BS01 CA ? GO:0046872 ... A0A1P8VSI6 30222239
    28740 5yvp:D (2.051) BS02 CA ? GO:0046872 ... A0A1P8VSI6 30222239
    28741 5yz3:A (2.545) BS02 CA 3.6.5.- GO:0000226 ... P81947 30135190
    28742 5yz3:C (2.545) BS02 CA 3.6.5.- GO:0000226 ... P81947 30135190
    28743 5yz4:A (2.135) BS01 CA ? GO:0032040 ... O13610 29641590
    28744 5yzx:A (3.2) BS02 CA 6.1.1.6 GO:0000049 ... P0A8N5 N/A
    28745 5yzx:A (3.2) BS03 CA 6.1.1.6 GO:0000049 ... P0A8N5 N/A
    28746 5yzx:B (3.2) BS02 CA 6.1.1.6 GO:0000049 ... P0A8N5 N/A
    28747 5yzx:C (3.2) BS02 CA 6.1.1.6 GO:0000049 ... P0A8N5 N/A
    28748 5z06:A (2.1) BS01 CA 3.2.1.214 GO:0016798 ... A6LGF6 29763309
    28749 5z06:B (2.1) BS01 CA 3.2.1.214 GO:0016798 ... A6LGF6 29763309
    28750 5z0t:A (1.5) BS01 CA 3.2.1.135 GO:0004553 ... Q60053 N/A
    28751 5z0t:A (1.5) BS02 CA 3.2.1.135 GO:0004553 ... Q60053 N/A
    28752 5z0t:A (1.5) BS03 CA 3.2.1.135 GO:0004553 ... Q60053 N/A
    28753 5z0t:B (1.5) BS01 CA 3.2.1.135 GO:0004553 ... Q60053 N/A
    28754 5z0t:B (1.5) BS02 CA 3.2.1.135 GO:0004553 ... Q60053 N/A
    28755 5z0t:B (1.5) BS03 CA 3.2.1.135 GO:0004553 ... Q60053 N/A
    28756 5z0u:A (1.37) BS01 CA 3.2.1.135 GO:0004553 ... Q60053 N/A
    28757 5z0u:A (1.37) BS02 CA 3.2.1.135 GO:0004553 ... Q60053 N/A
    28758 5z0u:A (1.37) BS03 CA 3.2.1.135 GO:0004553 ... Q60053 N/A
    28759 5z1q:A (2.3) BS01 CA ? GO:0005509 ... Q9XZV2 29607555
    28760 5z1q:B (2.3) BS01 CA ? GO:0005509 ... Q9XZV2 29607555
    28761 5z1q:B (2.3) BS02 CA ? GO:0005509 ... Q9XZV2 29607555
    28762 5z1q:C (2.3) BS01 CA ? GO:0005509 ... Q9XZV2 29607555
    28763 5z4p:A (2.5) BS02 CA 3.6.5.- GO:0000226 ... P81947 N/A
    28764 5z4p:B (2.5) BS03 CA ? GO:0000226 ... Q6B856 N/A
    28765 5z4u:A (3.18) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    28766 5z4u:C (3.18) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    28767 5z53:A (1.86) BS01 CA ? N/A A0A1P8VSI6 30222239
    28768 5z53:A (1.86) BS02 CA ? N/A A0A1P8VSI6 30222239
    28769 5z53:B (1.86) BS01 CA ? N/A A0A1P8VSI6 30222239
    28770 5z53:B (1.86) BS02 CA ? N/A A0A1P8VSI6 30222239
    28771 5z53:C (1.86) BS01 CA ? N/A A0A1P8VSI6 30222239
    28772 5z53:C (1.86) BS02 CA ? N/A A0A1P8VSI6 30222239
    28773 5z53:D (1.86) BS01 CA ? N/A A0A1P8VSI6 30222239
    28774 5z53:D (1.86) BS02 CA ? N/A A0A1P8VSI6 30222239
    28775 5z54:A (2.16) BS01 CA ? N/A A0A076NBW8 30222239
    28776 5z54:A (2.16) BS02 CA ? N/A A0A076NBW8 30222239
    28777 5z54:B (2.16) BS01 CA ? N/A A0A076NBW8 30222239
    28778 5z54:B (2.16) BS02 CA ? N/A A0A076NBW8 30222239
    28779 5z54:C (2.16) BS01 CA ? N/A A0A076NBW8 30222239
    28780 5z54:C (2.16) BS02 CA ? N/A A0A076NBW8 30222239
    28781 5z54:D (2.16) BS01 CA ? N/A A0A076NBW8 30222239
    28782 5z54:D (2.16) BS02 CA ? N/A A0A076NBW8 30222239
    28783 5z5d:A (1.7) BS01 CA 3.2.1.37 GO:0004553 ... Q2I2N4 29698436
    28784 5z5f:A (2.1) BS01 CA 3.2.1.37 GO:0004553 ... Q2I2N4 29698436
    28785 5z5h:A (1.9) BS01 CA 3.2.1.37 GO:0004553 ... Q2I2N4 29698436
    28786 5z5i:A (1.7) BS01 CA 3.2.1.37 GO:0004553 ... Q2I2N4 29698436
    28787 5z5l:A (2.3) BS02 CA ? GO:0030246 ... P02866 N/A
    28788 5z5l:B (2.3) BS02 CA ? GO:0030246 ... P02866 N/A
    28789 5z5l:C (2.3) BS02 CA ? GO:0030246 ... P02866 N/A
    28790 5z5l:D (2.3) BS01 CA ? GO:0030246 ... P02866 N/A
    28791 5z5n:A (2.04) BS01 CA ? GO:0030246 ... P02866 N/A
    28792 5z5n:B (2.04) BS01 CA ? GO:0030246 ... P02866 N/A
    28793 5z5n:C (2.04) BS01 CA ? GO:0030246 ... P02866 N/A
    28794 5z5n:D (2.04) BS01 CA ? GO:0030246 ... P02866 N/A
    28795 5z5p:A (1.4) BS02 CA ? GO:0030246 ... P02866 N/A
    28796 5z5p:B (1.4) BS02 CA ? GO:0030246 ... P02866 N/A
    28797 5z5y:A (1.89) BS03 CA ? GO:0030246 ... P02866 N/A
    28798 5z5y:B (1.89) BS03 CA ? GO:0030246 ... P02866 N/A
    28799 5z6e:A (1.864) BS01 CA ? GO:0016020 ... Q7RY31 30216631
    28800 5z6o:A (1.7) BS01 CA 3.4.21.64 GO:0004252 ... A0A2R2JFW8 9184139
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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