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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    28401 5xem:A (1.84) BS03 CA 2.5.1.47 GO:0004124 ... Q8RE94 N/A
    28402 5xem:B (1.84) BS04 CA 2.5.1.47 GO:0004124 ... Q8RE94 N/A
    28403 5xen:B (1.94) BS04 CA 2.5.1.47 GO:0004124 ... Q8RE94 N/A
    28404 5xeo:B (2.03) BS02 CA 2.5.1.47 GO:0004124 ... Q8RE94 N/A
    28405 5xfm:A (2.3) BS01 CA ? GO:0016798 ... Q8A1K0 28804002
    28406 5xfm:B (2.3) BS01 CA ? GO:0016798 ... Q8A1K0 28804002
    28407 5xfm:C (2.3) BS01 CA ? GO:0016798 ... Q8A1K0 28804002
    28408 5xfm:D (2.3) BS01 CA ? GO:0016798 ... Q8A1K0 28804002
    28409 5xhc:A (2.75) BS02 CA ? GO:0000226 ... A0A0R4I993 N/A
    28410 5xhc:C (2.75) BS02 CA ? GO:0000226 ... A0A0R4I993 N/A
    28411 5xi5:A (2.81) BS02 CA ? GO:0000226 ... A0A0R4I993 N/A
    28412 5xi5:C (2.81) BS02 CA ? GO:0000226 ... A0A0R4I993 N/A
    28413 5xi7:A (2.99) BS02 CA ? GO:0000226 ... A0A0R4I993 N/A
    28414 5xi7:C (2.99) BS02 CA ? GO:0000226 ... A0A0R4I993 N/A
    28415 5xiw:A (2.9) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    28416 5xiw:C (2.9) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    28417 5xke:A (2.6) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    28418 5xke:C (2.6) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    28419 5xkf:A (2.8) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    28420 5xkf:C (2.8) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    28421 5xkg:A (2.2) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    28422 5xkg:C (2.2) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    28423 5xkh:A (2.25) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    28424 5xkh:C (2.25) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    28425 5xlt:A (2.813) BS02 CA 3.6.5.- GO:0000226 ... P81947 28864414
    28426 5xlt:C (2.813) BS02 CA 3.6.5.- GO:0000226 ... P81947 28864414
    28427 5xlz:A (2.298) BS02 CA 3.6.5.- GO:0000226 ... P81947 29102632
    28428 5xlz:C (2.298) BS02 CA 3.6.5.- GO:0000226 ... P81947 29102632
    28429 5xmz:A (1.85) BS01 CA ? N/A G0Y276 28633330
    28430 5xnd:A (-1.00) BS01 CA ? GO:0005509 ... P59747 29215073
    28431 5xnd:A (-1.00) BS02 CA ? GO:0005509 ... P59747 29215073
    28432 5xnp:A (3.729) BS01 CA ? N/A Q96NI6 29348579
    28433 5xnp:A (3.729) BS02 CA ? N/A Q96NI6 29348579
    28434 5xnp:A (3.729) BS03 CA ? N/A Q96NI6 29348579
    28435 5xnp:B (3.729) BS01 CA ? N/A Q96NI6 29348579
    28436 5xnp:B (3.729) BS02 CA ? N/A Q96NI6 29348579
    28437 5xnp:B (3.729) BS03 CA ? N/A Q96NI6 29348579
    28438 5xnq:A (2.802) BS01 CA ? N/A Q96NI6 29348579
    28439 5xnr:A (2.3) BS01 CA ? GO:0004553 ... A0A3B6UEP6 29057942
    28440 5xop:A (1.9) BS01 CA ? GO:0005509 ... M3TKH6 17554780
    28441 5xop:A (1.9) BS02 CA ? GO:0005509 ... M3TKH6 17554780
    28442 5xop:B (1.9) BS01 CA ? GO:0005509 ... M3TKH6 17554780
    28443 5xop:B (1.9) BS02 CA ? GO:0005509 ... M3TKH6 17554780
    28444 5xop:B (1.9) BS03 CA ? GO:0005509 ... M3TKH6 17554780
    28445 5xop:C (1.9) BS01 CA ? GO:0005509 ... M3TKH6 17554780
    28446 5xop:C (1.9) BS02 CA ? GO:0005509 ... M3TKH6 17554780
    28447 5xop:D (1.9) BS01 CA ? GO:0005509 ... M3TKH6 17554780
    28448 5xop:D (1.9) BS02 CA ? GO:0005509 ... M3TKH6 17554780
    28449 5xop:E (1.9) BS01 CA ? GO:0005509 ... M3TKH6 17554780
    28450 5xop:E (1.9) BS02 CA ? GO:0005509 ... M3TKH6 17554780
    28451 5xop:F (1.9) BS01 CA ? GO:0005509 ... M3TKH6 17554780
    28452 5xop:F (1.9) BS02 CA ? GO:0005509 ... M3TKH6 17554780
    28453 5xp3:A (2.3) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    28454 5xp3:C (2.3) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    28455 5xps:A (1.07) BS03 CA 2.2.1.1 GO:0003824 ... P34736 30155962
    28456 5xpx:A (2.77) BS02 CA 3.1.1.3 GO:0004806 ... A0A0K0PTR1 N/A
    28457 5xpx:E (2.77) BS02 CA 3.1.1.3 GO:0004806 ... A0A0K0PTR1 N/A
    28458 5xq3:A (2.85) BS01 CA ? GO:0046872 ... B6H7Q7 29574769
    28459 5xq3:B (2.85) BS01 CA ? GO:0046872 ... B6H7Q7 29574769
    28460 5xqa:A (1.14) BS02 CA 2.2.1.1 GO:0003824 ... P34736 30155962
    28461 5xqg:A (2.74) BS03 CA ? GO:0046872 ... B6H7Q7 29574769
    28462 5xqg:B (2.74) BS03 CA ? GO:0046872 ... B6H7Q7 29574769
    28463 5xqg:C (2.74) BS03 CA ? GO:0046872 ... B6H7Q7 29574769
    28464 5xqg:D (2.74) BS03 CA ? GO:0046872 ... B6H7Q7 29574769
    28465 5xqg:E (2.74) BS03 CA ? GO:0046872 ... B6H7Q7 29574769
    28466 5xqg:F (2.74) BS03 CA ? GO:0046872 ... B6H7Q7 29574769
    28467 5xqg:G (2.74) BS03 CA ? GO:0046872 ... B6H7Q7 29574769
    28468 5xqg:H (2.74) BS03 CA ? GO:0046872 ... B6H7Q7 29574769
    28469 5xqj:A (2.75) BS04 CA ? GO:0046872 ... B6H7Q7 29574769
    28470 5xqj:B (2.75) BS03 CA ? GO:0046872 ... B6H7Q7 29574769
    28471 5xqj:C (2.75) BS04 CA ? GO:0046872 ... B6H7Q7 29574769
    28472 5xqj:D (2.75) BS03 CA ? GO:0046872 ... B6H7Q7 29574769
    28473 5xqj:E (2.75) BS04 CA ? GO:0046872 ... B6H7Q7 29574769
    28474 5xqj:F (2.75) BS04 CA ? GO:0046872 ... B6H7Q7 29574769
    28475 5xqj:G (2.75) BS04 CA ? GO:0046872 ... B6H7Q7 29574769
    28476 5xqj:H (2.75) BS03 CA ? GO:0046872 ... B6H7Q7 29574769
    28477 5xqk:A (1.12) BS02 CA 2.2.1.1 GO:0003824 ... P34736 30155962
    28478 5xqo:A (3.2) BS05 CA ? GO:0046872 ... B6H7Q7 29574769
    28479 5xqo:B (3.2) BS04 CA ? GO:0046872 ... B6H7Q7 29574769
    28480 5xrv:A (1.4) BS01 CA 2.2.1.1 GO:0003824 ... P34736 30155962
    28481 5xry:A (1.3) BS01 CA 2.2.1.1 GO:0003824 ... P34736 29243887
    28482 5xs6:A (0.972) BS01 CA 2.2.1.1 GO:0003824 ... P34736 29243887
    28483 5xs8:A (1.952) BS03 CA ? GO:0046872 ... D1AWE0 29208901
    28484 5xs8:B (1.952) BS03 CA ? GO:0046872 ... D1AWE0 29208901
    28485 5xs8:C (1.952) BS03 CA ? GO:0046872 ... D1AWE0 29208901
    28486 5xs8:D (1.952) BS03 CA ? GO:0046872 ... D1AWE0 29208901
    28487 5xsa:A (0.975) BS01 CA 2.2.1.1 GO:0003824 ... P34736 29243887
    28488 5xsb:A (0.918) BS01 CA 2.2.1.1 GO:0003824 ... P34736 29243887
    28489 5xsm:A (0.97) BS01 CA 2.2.1.1 GO:0003824 ... P34736 29243887
    28490 5xt0:A (1.15) BS01 CA 2.2.1.1 GO:0003824 ... P34736 30155962
    28491 5xt4:A (1.06) BS01 CA 2.2.1.1 GO:0003824 ... P34736 30155962
    28492 5xtl:A (1.101) BS02 CA 2.2.1.1 GO:0003824 ... P34736 29243887
    28493 5xts:A (2.0) BS01 CA ? N/A P22897 29225077
    28494 5xtv:A (0.931) BS01 CA 2.2.1.1 GO:0003824 ... P34736 29243887
    28495 5xtw:A (3.2) BS01 CA ? N/A P22897 29225077
    28496 5xtw:C (3.2) BS01 CA ? N/A P22897 29225077
    28497 5xtw:D (3.2) BS01 CA ? N/A P22897 29225077
    28498 5xtw:E (3.2) BS01 CA ? N/A P22897 29225077
    28499 5xtw:F (3.2) BS01 CA ? N/A P22897 29225077
    28500 5xtw:H (3.2) BS01 CA ? N/A P22897 29225077
    28501 5xu2:A (0.97) BS01 CA 2.2.1.1 GO:0003824 ... P34736 30155962
    28502 5xu9:A (1.166) BS01 CA 2.2.1.1 GO:0003824 ... P34736 30155962
    28503 5xuf:A (0.88) BS01 CA 2.2.1.1 GO:0003824 ... P34736 29243887
    28504 5xuw:A (1.76) BS01 CA 3.2.1.17 GO:0003796 ... P11375 N/A
    28505 5xuw:B (1.76) BS01 CA 3.2.1.17 GO:0003796 ... P11375 N/A
    28506 5xvt:A (0.85) BS01 CA 2.2.1.1 GO:0003824 ... P34736 29243887
    28507 5xvz:A (1.9) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    28508 5xvz:A (1.9) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    28509 5xvz:B (1.9) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    28510 5xvz:B (1.9) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    28511 5xvz:B (1.9) BS04 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    28512 5xvz:C (1.9) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    28513 5xvz:D (1.9) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    28514 5xw1:A (1.9) BS01 CA 3.4.21.4 GO:0004252 ... P00761 N/A
    28515 5xw8:A (2.002) BS02 CA 3.4.21.4 GO:0004252 ... P00761 29486250
    28516 5xw9:A (2.0) BS02 CA 3.4.21.4 GO:0004252 ... P00761 29486250
    28517 5xwa:A (1.9) BS01 CA 3.4.21.4 GO:0004252 ... P00761 29486250
    28518 5xwi:A (1.872) BS03 CA 3.1.3.1 GO:0004035 ... A1YYW7 N/A
    28519 5xwj:A (1.8) BS02 CA 3.4.21.4 GO:0004252 ... P00761 29486250
    28520 5xwj:B (1.8) BS02 CA 3.4.21.4 GO:0004252 ... P00761 29486250
    28521 5xwk:A (1.901) BS03 CA 3.1.3.1 GO:0004035 ... A1YYW7 N/A
    28522 5xwl:A (2.1) BS02 CA 3.4.21.4 GO:0004252 ... P00761 29486250
    28523 5xwl:B (2.1) BS02 CA 3.4.21.4 GO:0004252 ... P00761 29486250
    28524 5xxz:A (3.085) BS01 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    28525 5xxz:A (3.085) BS02 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    28526 5xxz:A (3.085) BS03 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    28527 5xxz:A (3.085) BS04 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    28528 5xxz:B (3.085) BS01 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    28529 5xxz:B (3.085) BS02 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    28530 5xxz:B (3.085) BS03 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    28531 5xy4:A (1.8) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    28532 5xy4:A (1.8) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    28533 5xy4:B (1.8) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    28534 5xy4:B (1.8) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    28535 5xy4:B (1.8) BS04 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    28536 5xy4:C (1.8) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    28537 5xy4:C (1.8) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    28538 5xy4:D (1.8) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    28539 5xya:A (3.0) BS02 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    28540 5xya:A (3.0) BS03 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    28541 5xya:A (3.0) BS04 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    28542 5xya:A (3.0) BS05 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    28543 5xyr:A (2.8) BS01 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    28544 5xyr:A (2.8) BS02 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    28545 5xyr:A (2.8) BS03 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    28546 5xzm:A (1.41) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    28547 5xzm:A (1.41) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    28548 5xzm:B (1.41) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    28549 5xzm:B (1.41) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    28550 5xzm:B (1.41) BS04 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    28551 5xzm:C (1.41) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    28552 5xzm:C (1.41) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    28553 5xzm:D (1.41) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    28554 5xzm:D (1.41) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    28555 5xzn:A (1.47) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    28556 5xzn:A (1.47) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    28557 5xzn:A (1.47) BS04 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    28558 5xzn:B (1.47) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    28559 5xzn:B (1.47) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    28560 5xzn:B (1.47) BS04 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    28561 5xzn:D (1.47) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    28562 5y17:A (2.3) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    28563 5y17:A (2.3) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    28564 5y17:B (2.3) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    28565 5y17:B (2.3) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    28566 5y17:C (2.3) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    28567 5y17:D (2.3) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    28568 5y2z:A (2.67) BS01 CA ? GO:0004222 ... Q9P0K1 29670100
    28569 5y2z:A (2.67) BS02 CA ? GO:0004222 ... Q9P0K1 29670100
    28570 5y2z:A (2.67) BS03 CA ? GO:0004222 ... Q9P0K1 29670100
    28571 5y2z:B (2.67) BS01 CA ? N/A O95970 29670100
    28572 5y2z:C (2.67) BS01 CA ? GO:0004222 ... Q9P0K1 29670100
    28573 5y2z:C (2.67) BS02 CA ? GO:0004222 ... Q9P0K1 29670100
    28574 5y2z:C (2.67) BS03 CA ? GO:0004222 ... Q9P0K1 29670100
    28575 5y2z:D (2.67) BS01 CA ? N/A O95970 29670100
    28576 5y2z:E (2.67) BS01 CA ? GO:0004222 ... Q9P0K1 29670100
    28577 5y2z:E (2.67) BS02 CA ? GO:0004222 ... Q9P0K1 29670100
    28578 5y2z:E (2.67) BS03 CA ? GO:0004222 ... Q9P0K1 29670100
    28579 5y2z:F (2.67) BS01 CA ? N/A O95970 29670100
    28580 5y2z:G (2.67) BS01 CA ? GO:0004222 ... Q9P0K1 29670100
    28581 5y2z:G (2.67) BS02 CA ? GO:0004222 ... Q9P0K1 29670100
    28582 5y2z:G (2.67) BS03 CA ? GO:0004222 ... Q9P0K1 29670100
    28583 5y2z:H (2.67) BS01 CA ? N/A O95970 29670100
    28584 5y2z:I (2.67) BS01 CA ? GO:0004222 ... Q9P0K1 29670100
    28585 5y2z:I (2.67) BS02 CA ? GO:0004222 ... Q9P0K1 29670100
    28586 5y2z:I (2.67) BS03 CA ? GO:0004222 ... Q9P0K1 29670100
    28587 5y2z:J (2.67) BS02 CA ? N/A O95970 29670100
    28588 5y2z:K (2.67) BS01 CA ? GO:0004222 ... Q9P0K1 29670100
    28589 5y2z:K (2.67) BS02 CA ? GO:0004222 ... Q9P0K1 29670100
    28590 5y2z:K (2.67) BS03 CA ? GO:0004222 ... Q9P0K1 29670100
    28591 5y2z:L (2.67) BS01 CA ? N/A O95970 29670100
    28592 5y31:A (7.125) BS01 CA ? GO:0004222 ... Q9P0K1 29670100
    28593 5y31:A (7.125) BS02 CA ? GO:0004222 ... Q9P0K1 29670100
    28594 5y31:A (7.125) BS03 CA ? GO:0004222 ... Q9P0K1 29670100
    28595 5y31:B (7.125) BS01 CA ? GO:0005102 ... O95970 29670100
    28596 5y31:C (7.125) BS01 CA ? GO:0004222 ... Q9P0K1 29670100
    28597 5y31:C (7.125) BS02 CA ? GO:0004222 ... Q9P0K1 29670100
    28598 5y31:C (7.125) BS03 CA ? GO:0004222 ... Q9P0K1 29670100
    28599 5y31:D (7.125) BS01 CA ? GO:0005102 ... O95970 29670100
    28600 5y5e:A (1.8) BS02 CA 3.1.1.4 GO:0004623 ... Q9NZK7 28883454
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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