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BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    28001 5w1c:A (3.18) BS03 CA 3.5.4.38 GO:0003824 ... P0AEX9
    Q9GZX7
    28757211
    28002 5w1c:B (3.18) BS04 CA 3.5.4.38 GO:0003824 ... P0AEX9
    Q9GZX7
    28757211
    28003 5w1d:A (3.35) BS01 CA ? GO:0005509 ... Q99PJ1 32963095
    28004 5w1d:A (3.35) BS02 CA ? GO:0005509 ... Q99PJ1 32963095
    28005 5w1d:A (3.35) BS03 CA ? GO:0005509 ... Q99PJ1 32963095
    28006 5w1d:A (3.35) BS04 CA ? GO:0005509 ... Q99PJ1 32963095
    28007 5w1d:A (3.35) BS05 CA ? GO:0005509 ... Q99PJ1 32963095
    28008 5w1d:A (3.35) BS06 CA ? GO:0005509 ... Q99PJ1 32963095
    28009 5w1f:A (2.6) BS01 CA ? GO:0002523 ... P05109 28573847
    28010 5w1f:B (2.6) BS02 CA ? GO:0002523 ... P06702 28573847
    28011 5w1f:C (2.6) BS02 CA ? GO:0002523 ... P05109 28573847
    28012 5w1f:D (2.6) BS03 CA ? GO:0002523 ... P06702 28573847
    28013 5w1f:D (2.6) BS04 CA ? GO:0002523 ... P06702 28573847
    28014 5w1f:E (2.6) BS02 CA ? GO:0002523 ... P05109 28573847
    28015 5w1f:F (2.6) BS03 CA ? GO:0002523 ... P06702 28573847
    28016 5w1f:F (2.6) BS04 CA ? GO:0002523 ... P06702 28573847
    28017 5w1f:G (2.6) BS01 CA ? GO:0002523 ... P05109 28573847
    28018 5w1f:H (2.6) BS02 CA ? GO:0002523 ... P06702 28573847
    28019 5w26:A (1.9) BS02 CA 3.2.1.18 GO:0004308 ... P03472 29397718
    28020 5w2u:A (2.0) BS02 CA 3.2.1.18 GO:0004308 ... P03472 29397718
    28021 5w2w:A (1.85) BS02 CA 3.2.1.18 GO:0004308 ... P03472 29397718
    28022 5w2y:A (2.39) BS02 CA 3.2.1.18 GO:0004308 ... P03472 29397718
    28023 5w3q:A (1.401) BS02 CA 1.5.1.3 GO:0004146 ... P0ABQ4 28737940
    28024 5w4c:A (2.255) BS02 CA 1.8.1.9 GO:0000166 ... J9VRX9 N/A
    28025 5w4c:B (2.255) BS02 CA 1.8.1.9 GO:0000166 ... J9VRX9 N/A
    28026 5w4s:A (-1.00) BS02 CA 2.7.11.13 N/A P05696 29642029
    28027 5w4s:A (-1.00) BS03 CA 2.7.11.13 N/A P05696 29642029
    28028 5w4t:A (2.65) BS01 CA ? GO:0005509 ... F1R7G8 30033219
    28029 5w4t:A (2.65) BS02 CA ? GO:0005509 ... F1R7G8 30033219
    28030 5w4t:A (2.65) BS03 CA ? GO:0005509 ... F1R7G8 30033219
    28031 5w4t:A (2.65) BS04 CA ? GO:0005509 ... F1R7G8 30033219
    28032 5w4t:A (2.65) BS05 CA ? GO:0005509 ... F1R7G8 30033219
    28033 5w4t:A (2.65) BS06 CA ? GO:0005509 ... F1R7G8 30033219
    28034 5w4t:A (2.65) BS07 CA ? GO:0005509 ... F1R7G8 30033219
    28035 5w4t:B (2.65) BS01 CA ? GO:0005509 ... F1R7G8 30033219
    28036 5w4t:B (2.65) BS02 CA ? GO:0005509 ... F1R7G8 30033219
    28037 5w4t:B (2.65) BS03 CA ? GO:0005509 ... F1R7G8 30033219
    28038 5w4t:B (2.65) BS04 CA ? GO:0005509 ... F1R7G8 30033219
    28039 5w4t:B (2.65) BS05 CA ? GO:0005509 ... F1R7G8 30033219
    28040 5w4t:B (2.65) BS06 CA ? GO:0005509 ... F1R7G8 30033219
    28041 5w4t:B (2.65) BS07 CA ? GO:0005509 ... F1R7G8 30033219
    28042 5w4t:C (2.65) BS01 CA ? GO:0005509 ... F1R7G8 30033219
    28043 5w4t:C (2.65) BS02 CA ? GO:0005509 ... F1R7G8 30033219
    28044 5w4t:C (2.65) BS03 CA ? GO:0005509 ... F1R7G8 30033219
    28045 5w4t:C (2.65) BS04 CA ? GO:0005509 ... F1R7G8 30033219
    28046 5w4t:C (2.65) BS05 CA ? GO:0005509 ... F1R7G8 30033219
    28047 5w4t:C (2.65) BS06 CA ? GO:0005509 ... F1R7G8 30033219
    28048 5w4t:C (2.65) BS07 CA ? GO:0005509 ... F1R7G8 30033219
    28049 5w4t:D (2.65) BS01 CA ? GO:0005509 ... F1R7G8 30033219
    28050 5w4t:D (2.65) BS02 CA ? GO:0005509 ... F1R7G8 30033219
    28051 5w4t:D (2.65) BS03 CA ? GO:0005509 ... F1R7G8 30033219
    28052 5w4t:D (2.65) BS04 CA ? GO:0005509 ... F1R7G8 30033219
    28053 5w4t:D (2.65) BS05 CA ? GO:0005509 ... F1R7G8 30033219
    28054 5w4t:D (2.65) BS06 CA ? GO:0005509 ... F1R7G8 30033219
    28055 5w4t:D (2.65) BS07 CA ? GO:0005509 ... F1R7G8 30033219
    28056 5w78:B (2.271) BS01 CA 3.1.1.77 GO:0016788 ... P28039 29343645
    28057 5w78:B (2.271) BS02 CA 3.1.1.77 GO:0016788 ... P28039 29343645
    28058 5w7a:B (2.3) BS01 CA 3.1.1.77 GO:0016788 ... O18823 29343645
    28059 5w7a:B (2.3) BS02 CA 3.1.1.77 GO:0016788 ... O18823 29343645
    28060 5w7a:B (2.3) BS03 CA 3.1.1.77 GO:0016788 ... O18823 29343645
    28061 5w7b:C (1.9) BS01 CA 3.1.1.77 GO:0016788 ... O18823 29343645
    28062 5w7b:C (1.9) BS02 CA 3.1.1.77 GO:0016788 ... O18823 29343645
    28063 5w7b:C (1.9) BS03 CA 3.1.1.77 GO:0016788 ... O18823 29343645
    28064 5w7b:D (1.9) BS01 CA 3.1.1.77 GO:0016788 ... O18823 29343645
    28065 5w7b:D (1.9) BS02 CA 3.1.1.77 GO:0016788 ... O18823 29343645
    28066 5w7b:D (1.9) BS03 CA 3.1.1.77 GO:0016788 ... O18823 29343645
    28067 5w7c:C (2.23) BS01 CA 3.1.1.77 GO:0016788 ... P28039 29343645
    28068 5w7c:C (2.23) BS02 CA 3.1.1.77 GO:0016788 ... P28039 29343645
    28069 5w7c:C (2.23) BS03 CA 3.1.1.77 GO:0016788 ... P28039 29343645
    28070 5w7c:D (2.23) BS01 CA 3.1.1.77 GO:0016788 ... P28039 29343645
    28071 5w7c:D (2.23) BS02 CA 3.1.1.77 GO:0016788 ... P28039 29343645
    28072 5w7c:D (2.23) BS03 CA 3.1.1.77 GO:0016788 ... P28039 29343645
    28073 5w7d:A (1.75) BS01 CA 3.1.1.77 GO:0005509 ... O35298 29343645
    28074 5w7d:A (1.75) BS02 CA 3.1.1.77 GO:0005509 ... O35298 29343645
    28075 5w7d:A (1.75) BS03 CA 3.1.1.77 GO:0005509 ... O35298 29343645
    28076 5w7e:A (1.83) BS01 CA 3.1.1.77 GO:0005509 ... O35298 29343645
    28077 5w7e:A (1.83) BS02 CA 3.1.1.77 GO:0005509 ... O35298 29343645
    28078 5w7e:A (1.83) BS03 CA 3.1.1.77 GO:0005509 ... O35298 29343645
    28079 5w7e:B (1.83) BS01 CA 3.1.1.77 GO:0005509 ... O35298 29343645
    28080 5w7e:B (1.83) BS02 CA 3.1.1.77 GO:0005509 ... O35298 29343645
    28081 5w7e:B (1.83) BS03 CA 3.1.1.77 GO:0005509 ... O35298 29343645
    28082 5w7f:A (2.8) BS01 CA 3.1.1.77 GO:0005509 ... O35298 29343645
    28083 5w7f:A (2.8) BS02 CA 3.1.1.77 GO:0005509 ... O35298 29343645
    28084 5w7f:A (2.8) BS03 CA 3.1.1.77 GO:0005509 ... O35298 29343645
    28085 5w7f:B (2.8) BS01 CA 3.1.1.77 GO:0005509 ... O35298 29343645
    28086 5w7f:B (2.8) BS02 CA 3.1.1.77 GO:0005509 ... O35298 29343645
    28087 5w7f:B (2.8) BS03 CA 3.1.1.77 GO:0005509 ... O35298 29343645
    28088 5w80:A (2.0) BS02 CA ? GO:0004672 ... Q9BJF5 N/A
    28089 5w8o:A (1.47) BS01 CA 2.3.1.31 GO:0003824 ... K5B926 31889085
    28090 5w8o:B (1.47) BS01 CA 2.3.1.31 GO:0003824 ... K5B926 31889085
    28091 5w8r:A (2.2) BS02 CA ? GO:0004672 ... Q9BJF5 N/A
    28092 5w91:A (2.4) BS02 CA ? GO:0004672 ... Q9BJF5 N/A
    28093 5wbx:R (1.9) BS01 CA ? GO:0000086 ... P0DP23 29214998
    28094 5wbx:R (1.9) BS02 CA ? GO:0000086 ... P0DP23 29214998
    28095 5wc5:R (2.3) BS01 CA ? GO:0000086 ... P0DP23 29214998
    28096 5wc5:R (2.3) BS02 CA ? GO:0000086 ... P0DP23 29214998
    28097 5wcx:A (2.0) BS03 CA ? N/A Q9A0F9 N/A
    28098 5wd6:A (2.0) BS01 CA ? GO:0001530 ... P79125 30978191
    28099 5wda:A (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    28100 5wda:B (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    28101 5wda:C (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    28102 5wda:D (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    28103 5wda:E (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    28104 5wda:F (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    28105 5wda:G (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    28106 5wda:H (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    28107 5wda:I (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    28108 5wda:J (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    28109 5wda:K (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    28110 5wda:L (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    28111 5wda:M (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    28112 5wda:N (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    28113 5wda:O (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    28114 5wda:P (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    28115 5wda:Q (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    28116 5wda:R (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    28117 5wda:S (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    28118 5wda:T (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    28119 5wda:U (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    28120 5wda:V (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    28121 5wda:W (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    28122 5wda:X (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    28123 5wda:Y (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    28124 5wdj:B (2.4) BS03 CA 1.11.2.2 GO:0004601 ... P05164 30108726
    28125 5wdj:E (2.4) BS02 CA 1.11.2.2 GO:0004601 ... P05164 30108726
    28126 5wdo:A (1.65) BS01 CA 3.6.5.2 GO:0003924 ... P01112 28686159
    28127 5wdp:A (1.35) BS01 CA 3.6.5.2 GO:0003924 ... P01112 28686159
    28128 5wdp:A (1.35) BS03 CA 3.6.5.2 GO:0003924 ... P01112 28686159
    28129 5wdq:A (1.25) BS02 CA 3.6.5.2 GO:0003924 ... P01112 28686159
    28130 5wdq:A (1.25) BS04 CA 3.6.5.2 GO:0003924 ... P01112 28686159
    28131 5weh:A (3.45) BS05 CA 7.1.1.9 GO:0004129 ... P33517 28842531
    28132 5weh:G (3.45) BS05 CA 7.1.1.9 GO:0004129 ... P33517 28842531
    28133 5wey:A (1.8) BS03 CA ? N/A P02866 28846383
    28134 5wha:A (2.04) BS02 CA 3.6.5.2 GO:0003924 ... P01116 29282294
    28135 5wha:D (2.04) BS03 CA 3.6.5.2 GO:0003924 ... P01116 29282294
    28136 5wha:G (2.04) BS02 CA 3.6.5.2 GO:0003924 ... P01116 29282294
    28137 5wha:I (2.04) BS02 CA N/A N/A N/A 29282294
    28138 5wha:J (2.04) BS02 CA 3.6.5.2 GO:0003924 ... P01116 29282294
    28139 5wha:L (2.04) BS02 CA N/A N/A N/A 29282294
    28140 5whb:A (2.18) BS03 CA 3.6.5.2 GO:0003924 ... P01116 29282294
    28141 5whb:C (2.18) BS01 CA N/A N/A N/A 29282294
    28142 5whb:D (2.18) BS02 CA 3.6.5.2 GO:0003924 ... P01116 29282294
    28143 5whb:F (2.18) BS01 CA N/A N/A N/A 29282294
    28144 5whe:A (1.91) BS02 CA 3.6.5.2 GO:0003924 ... P01116 29282294
    28145 5whe:D (1.91) BS02 CA 3.6.5.2 GO:0003924 ... P01116 29282294
    28146 5whe:F (1.91) BS01 CA N/A N/A N/A 29282294
    28147 5whe:G (1.91) BS02 CA 3.6.5.2 GO:0003924 ... P01116 29282294
    28148 5whm:A (1.95) BS01 CA N/A GO:0003677 ... N/A 29567835
    28149 5whv:F (2.303) BS01 CA ? N/A Q404H3 28993610
    28150 5whw:A (1.71) BS01 CA 3.4.21.64 GO:0004252 ... P06873 30289409
    28151 5whw:A (1.71) BS02 CA 3.4.21.64 GO:0004252 ... P06873 30289409
    28152 5why:A (2.692) BS05 CA ? GO:0003824 ... A3DDW1 28704043
    28153 5why:B (2.692) BS05 CA ? GO:0003824 ... A3DDW1 28704043
    28154 5wj8:A (1.86) BS01 CA ? GO:0005509 ... Q9H251 30033219
    28155 5wj8:A (1.86) BS02 CA ? GO:0005509 ... Q9H251 30033219
    28156 5wj8:A (1.86) BS03 CA ? GO:0005509 ... Q9H251 30033219
    28157 5wj8:A (1.86) BS04 CA ? GO:0005509 ... Q9H251 30033219
    28158 5wjg:A (1.5) BS01 CA 3.4.21.64 GO:0004252 ... P06873 30289409
    28159 5wjh:A (1.63) BS01 CA 3.4.21.64 GO:0004252 ... P06873 30289409
    28160 5wjm:A (2.9) BS01 CA ? GO:0005509 ... Q99PF4 30033219
    28161 5wjm:A (2.9) BS02 CA ? GO:0005509 ... Q99PF4 30033219
    28162 5wjm:A (2.9) BS03 CA ? GO:0005509 ... Q99PF4 30033219
    28163 5wjm:A (2.9) BS04 CA ? GO:0005509 ... Q99PF4 30033219
    28164 5wjm:A (2.9) BS05 CA ? GO:0005509 ... Q99PF4 30033219
    28165 5wjm:A (2.9) BS06 CA ? GO:0005509 ... Q99PF4 30033219
    28166 5wmm:A (2.9) BS03 CA ? N/A Q333U7 29556104
    28167 5wmm:A (2.9) BS04 CA ? N/A Q333U7 29556104
    28168 5wnx:A (2.55) BS05 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    28169 5wnx:A (2.55) BS06 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    28170 5wny:A (2.1) BS04 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    28171 5wny:A (2.1) BS05 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    28172 5wnz:A (2.2) BS04 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    28173 5wnz:A (2.2) BS05 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    28174 5wo0:A (1.6) BS04 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    28175 5wo0:A (1.6) BS06 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28862449
    28176 5wpl:A (2.15) BS04 CA 3.6.5.2 GO:0003924 ... P01112 29282294
    28177 5wpl:G (2.15) BS04 CA 3.6.5.2 GO:0003924 ... P01112 29282294
    28178 5wpl:J (2.15) BS04 CA 3.6.5.2 GO:0003924 ... P01112 29282294
    28179 5wpl:L (2.15) BS02 CA N/A N/A N/A 29282294
    28180 5wpp:A (1.7) BS01 CA ? GO:0046872 ... A0A076NBW8 29531360
    28181 5wpp:A (1.7) BS02 CA ? GO:0046872 ... A0A076NBW8 29531360
    28182 5wpp:A (1.7) BS03 CA ? GO:0046872 ... A0A076NBW8 29531360
    28183 5wpp:B (1.7) BS01 CA ? GO:0046872 ... A0A076NBW8 29531360
    28184 5wpp:B (1.7) BS02 CA ? GO:0046872 ... A0A076NBW8 29531360
    28185 5wpp:B (1.7) BS03 CA ? GO:0046872 ... A0A076NBW8 29531360
    28186 5wpr:A (1.49) BS01 CA ? GO:0046872 ... A0A076NBW8 29531360
    28187 5wpr:A (1.49) BS02 CA ? GO:0046872 ... A0A076NBW8 29531360
    28188 5wps:A (1.389) BS01 CA ? GO:0046872 ... A0A076NBW8 29531360
    28189 5wps:A (1.389) BS02 CA ? GO:0046872 ... A0A076NBW8 29531360
    28190 5wpu:A (1.39) BS01 CA ? GO:0046872 ... A0A076NBW8 29531360
    28191 5wpu:A (1.39) BS02 CA ? GO:0046872 ... A0A076NBW8 29531360
    28192 5wqf:A (2.001) BS01 CA 5.-.-.- GO:0016114 ... Q0C8A2 28759016
    28193 5wqg:A (2.3) BS01 CA 5.-.-.- GO:0016114 ... Q0C8A2 28759016
    28194 5wqg:B (2.3) BS01 CA 5.-.-.- GO:0016114 ... Q0C8A2 28759016
    28195 5wqh:A (2.102) BS01 CA 5.-.-.- GO:0016114 ... Q0C8A2 28759016
    28196 5wqh:A (2.102) BS02 CA 5.-.-.- GO:0016114 ... Q0C8A2 28759016
    28197 5wqh:B (2.102) BS01 CA 5.-.-.- GO:0016114 ... Q0C8A2 28759016
    28198 5wqi:A (1.899) BS01 CA 5.-.-.- GO:0016114 ... Q0C8A2 28759016
    28199 5wqi:A (1.899) BS02 CA 5.-.-.- GO:0016114 ... Q0C8A2 28759016
    28200 5wqi:D (1.899) BS01 CA 5.-.-.- GO:0016114 ... Q0C8A2 28759016

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218