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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    27401 5t9q:A (2.1) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27402 5t9q:A (2.1) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27403 5t9r:B (5.8) BS02 CA ? GO:0003151 ... P11716 27662087
    27404 5t9r:E (5.8) BS02 CA ? GO:0003151 ... P11716 27662087
    27405 5t9r:G (5.8) BS02 CA ? GO:0003151 ... P11716 27662087
    27406 5t9r:I (5.8) BS02 CA ? GO:0003151 ... P11716 27662087
    27407 5t9s:B (4.2) BS02 CA ? GO:0003151 ... P11716 27662087
    27408 5t9s:E (4.2) BS02 CA ? GO:0003151 ... P11716 27662087
    27409 5t9s:G (4.2) BS02 CA ? GO:0003151 ... P11716 27662087
    27410 5t9s:I (4.2) BS02 CA ? GO:0003151 ... P11716 27662087
    27411 5t9t:A (3.5) BS01 CA ? GO:0005509 ... Q8K486 27782885
    27412 5t9t:A (3.5) BS02 CA ? GO:0005509 ... Q8K486 27782885
    27413 5t9t:A (3.5) BS03 CA ? GO:0005509 ... Q8K486 27782885
    27414 5t9t:A (3.5) BS04 CA ? GO:0005509 ... Q8K486 27782885
    27415 5t9t:A (3.5) BS05 CA ? GO:0005509 ... Q8K486 27782885
    27416 5t9t:A (3.5) BS06 CA ? GO:0005509 ... Q8K486 27782885
    27417 5t9t:A (3.5) BS07 CA ? GO:0005509 ... Q8K486 27782885
    27418 5t9t:A (3.5) BS08 CA ? GO:0005509 ... Q8K486 27782885
    27419 5t9t:A (3.5) BS09 CA ? GO:0005509 ... Q8K486 27782885
    27420 5t9t:A (3.5) BS10 CA ? GO:0005509 ... Q8K486 27782885
    27421 5t9t:A (3.5) BS11 CA ? GO:0005509 ... Q8K486 27782885
    27422 5t9t:A (3.5) BS12 CA ? GO:0005509 ... Q8K486 27782885
    27423 5t9t:B (3.5) BS01 CA ? GO:0005509 ... Q8K486 27782885
    27424 5t9t:B (3.5) BS02 CA ? GO:0005509 ... Q8K486 27782885
    27425 5t9t:B (3.5) BS03 CA ? GO:0005509 ... Q8K486 27782885
    27426 5t9t:B (3.5) BS04 CA ? GO:0005509 ... Q8K486 27782885
    27427 5t9t:B (3.5) BS05 CA ? GO:0005509 ... Q8K486 27782885
    27428 5t9t:B (3.5) BS06 CA ? GO:0005509 ... Q8K486 27782885
    27429 5t9t:B (3.5) BS07 CA ? GO:0005509 ... Q8K486 27782885
    27430 5t9t:B (3.5) BS08 CA ? GO:0005509 ... Q8K486 27782885
    27431 5t9t:B (3.5) BS09 CA ? GO:0005509 ... Q8K486 27782885
    27432 5t9t:B (3.5) BS10 CA ? GO:0005509 ... Q8K486 27782885
    27433 5t9t:B (3.5) BS11 CA ? GO:0005509 ... Q8K486 27782885
    27434 5t9t:B (3.5) BS12 CA ? GO:0005509 ... Q8K486 27782885
    27435 5t9t:B (3.5) BS13 CA ? GO:0005509 ... Q8K486 27782885
    27436 5t9t:B (3.5) BS14 CA ? GO:0005509 ... Q8K486 27782885
    27437 5t9v:B (4.4) BS04 CA ? GO:0005216 ... P11716 27662087
    27438 5t9v:E (4.4) BS04 CA ? GO:0005216 ... P11716 27662087
    27439 5t9v:G (4.4) BS04 CA ? GO:0005216 ... P11716 27662087
    27440 5t9v:I (4.4) BS04 CA ? GO:0005216 ... P11716 27662087
    27441 5ta0:A (1.4) BS05 CA ? N/A A0A2D0TCD2 29535379
    27442 5ta0:A (1.4) BS06 CA ? N/A A0A2D0TCD2 29535379
    27443 5ta0:B (1.4) BS01 CA ? N/A A0A2D0TCD2 29535379
    27444 5ta0:B (1.4) BS02 CA ? N/A A0A2D0TCD2 29535379
    27445 5ta1:A (2.3) BS01 CA ? GO:0046872 ... A0A2D0TCD3 29535379
    27446 5ta1:A (2.3) BS02 CA ? GO:0046872 ... A0A2D0TCD3 29535379
    27447 5ta3:B (4.4) BS04 CA ? GO:0005216 ... P11716 27662087
    27448 5ta3:E (4.4) BS04 CA ? GO:0005216 ... P11716 27662087
    27449 5ta3:G (4.4) BS04 CA ? GO:0005216 ... P11716 27662087
    27450 5ta3:I (4.4) BS04 CA ? GO:0005216 ... P11716 27662087
    27451 5ta5:A (1.65) BS05 CA ? GO:0046872 ... A0A2D0TCD3 29535379
    27452 5ta5:A (1.65) BS06 CA ? GO:0046872 ... A0A2D0TCD3 29535379
    27453 5ta5:A (1.65) BS07 CA ? GO:0046872 ... A0A2D0TCD3 29535379
    27454 5ta5:B (1.65) BS01 CA ? GO:0046872 ... A0A2D0TCD3 29535379
    27455 5ta5:B (1.65) BS02 CA ? GO:0046872 ... A0A2D0TCD3 29535379
    27456 5ta5:B (1.65) BS03 CA ? GO:0046872 ... A0A2D0TCD3 29535379
    27457 5tac:A (2.04) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27458 5tac:A (2.04) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27459 5tac:A (2.04) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27460 5tac:A (2.04) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27461 5tad:A (2.09) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27462 5tad:A (2.09) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27463 5tad:A (2.09) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27464 5tad:A (2.09) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27465 5tae:A (2.302) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27466 5tae:A (2.302) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27467 5tae:A (2.302) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27468 5tae:A (2.302) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27469 5tai:A (2.301) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27470 5tai:A (2.301) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27471 5tai:A (2.301) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27472 5tai:A (2.301) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27473 5taj:A (2.031) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27474 5taj:A (2.031) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27475 5taj:A (2.031) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27476 5taj:A (2.031) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27477 5tak:A (2.003) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27478 5tak:A (2.003) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27479 5tak:A (2.003) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27480 5tak:A (2.003) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27481 5tal:B (4.3) BS04 CA ? GO:0005216 ... P11716 27662087
    27482 5tal:E (4.3) BS04 CA ? GO:0005216 ... P11716 27662087
    27483 5tal:G (4.3) BS04 CA ? GO:0005216 ... P11716 27662087
    27484 5tal:I (4.3) BS04 CA ? GO:0005216 ... P11716 27662087
    27485 5tam:B (4.3) BS04 CA ? GO:0005216 ... P11716 27662087
    27486 5tam:E (4.3) BS04 CA ? GO:0005216 ... P11716 27662087
    27487 5tam:G (4.3) BS04 CA ? GO:0005216 ... P11716 27662087
    27488 5tam:I (4.3) BS04 CA ? GO:0005216 ... P11716 27662087
    27489 5tan:B (4.3) BS04 CA ? GO:0005216 ... P11716 27662087
    27490 5tan:E (4.3) BS04 CA ? GO:0005216 ... P11716 27662087
    27491 5tan:G (4.3) BS04 CA ? GO:0005216 ... P11716 27662087
    27492 5tan:I (4.3) BS04 CA ? GO:0005216 ... P11716 27662087
    27493 5taq:B (4.1) BS04 CA ? GO:0005216 ... P11716 27662087
    27494 5taq:E (4.1) BS04 CA ? GO:0005216 ... P11716 27662087
    27495 5taq:G (4.1) BS04 CA ? GO:0005216 ... P11716 27662087
    27496 5taq:I (4.1) BS04 CA ? GO:0005216 ... P11716 27662087
    27497 5taw:B (4.4) BS02 CA ? GO:0005216 ... P11716 27662087
    27498 5taw:E (4.4) BS02 CA ? GO:0005216 ... P11716 27662087
    27499 5taw:G (4.4) BS02 CA ? GO:0005216 ... P11716 27662087
    27500 5taw:I (4.4) BS02 CA ? GO:0005216 ... P11716 27662087
    27501 5tax:B (6.6) BS02 CA ? GO:0005216 ... P11716 27662087
    27502 5tax:E (6.6) BS02 CA ? GO:0005216 ... P11716 27662087
    27503 5tax:G (6.6) BS02 CA ? GO:0005216 ... P11716 27662087
    27504 5tax:I (6.6) BS02 CA ? GO:0005216 ... P11716 27662087
    27505 5tay:B (4.6) BS02 CA ? GO:0005216 ... P11716 27662087
    27506 5tay:E (4.6) BS02 CA ? GO:0005216 ... P11716 27662087
    27507 5tay:G (4.6) BS02 CA ? GO:0005216 ... P11716 27662087
    27508 5tay:I (4.6) BS02 CA ? GO:0005216 ... P11716 27662087
    27509 5taz:B (4.3) BS02 CA ? GO:0005216 ... P11716 27662087
    27510 5taz:E (4.3) BS02 CA ? GO:0005216 ... P11716 27662087
    27511 5taz:G (4.3) BS02 CA ? GO:0005216 ... P11716 27662087
    27512 5taz:I (4.3) BS02 CA ? GO:0005216 ... P11716 27662087
    27513 5td4:A (2.3) BS11 CA 3.2.1.1 GO:0003824 ... P04746 27756128
    27514 5tea:A (1.85) BS01 CA 3.6.1.1 GO:0000287 ... Q9K0G4 N/A
    27515 5tea:B (1.85) BS01 CA 3.6.1.1 GO:0000287 ... Q9K0G4 N/A
    27516 5tea:C (1.85) BS01 CA 3.6.1.1 GO:0000287 ... Q9K0G4 N/A
    27517 5tea:D (1.85) BS01 CA 3.6.1.1 GO:0000287 ... Q9K0G4 N/A
    27518 5tea:E (1.85) BS01 CA 3.6.1.1 GO:0000287 ... Q9K0G4 N/A
    27519 5tea:F (1.85) BS01 CA 3.6.1.1 GO:0000287 ... Q9K0G4 N/A
    27520 5tf9:A (2.5) BS04 CA 2.7.11.1 GO:0004672 ... Q9H4A3 27712055
    27521 5tfk:A (2.8) BS01 CA ? GO:0005509 ... Q99PF4 30033219
    27522 5tfk:A (2.8) BS02 CA ? GO:0005509 ... Q99PF4 30033219
    27523 5tfk:A (2.8) BS03 CA ? GO:0005509 ... Q99PF4 30033219
    27524 5tfk:A (2.8) BS04 CA ? GO:0005509 ... Q99PF4 30033219
    27525 5tfk:A (2.8) BS05 CA ? GO:0005509 ... Q99PF4 30033219
    27526 5tfk:A (2.8) BS06 CA ? GO:0005509 ... Q99PF4 30033219
    27527 5tfk:A (2.8) BS07 CA ? GO:0005509 ... Q99PF4 30033219
    27528 5tfk:A (2.8) BS08 CA ? GO:0005509 ... Q99PF4 30033219
    27529 5tfl:A (3.56) BS01 CA ? GO:0005509 ... Q99PF4 30033219
    27530 5tfl:A (3.56) BS02 CA ? GO:0005509 ... Q99PF4 30033219
    27531 5tfl:B (3.56) BS01 CA ? GO:0005509 ... Q99PF4 30033219
    27532 5tfl:B (3.56) BS02 CA ? GO:0005509 ... Q99PF4 30033219
    27533 5tfm:A (2.92) BS01 CA ? GO:0005509 ... Q9H251 30033219
    27534 5tfm:A (2.92) BS02 CA ? GO:0005509 ... Q9H251 30033219
    27535 5tfm:A (2.92) BS03 CA ? GO:0005509 ... Q9H251 30033219
    27536 5tfm:A (2.92) BS04 CA ? GO:0005509 ... Q9H251 30033219
    27537 5tfm:A (2.92) BS05 CA ? GO:0005509 ... Q9H251 30033219
    27538 5tg3:A (1.765) BS01 CA ? GO:0005509 ... C0HK81 28130130
    27539 5tg3:B (1.765) BS01 CA ? GO:0005509 ... C0HK81 28130130
    27540 5tg3:C (1.765) BS01 CA ? GO:0005509 ... C0HK81 28130130
    27541 5tg3:D (1.765) BS01 CA ? GO:0005509 ... C0HK81 28130130
    27542 5tgf:D (1.81) BS01 CA ? GO:0046872 ... B6VTD5 N/A
    27543 5tgq:A (1.88) BS01 CA ? GO:0046872 ... A0A1S4NYF7 28180307
    27544 5tgx:A (2.3) BS03 CA ? GO:0046872 ... A0A1S4NYF7 28180307
    27545 5tgx:B (2.3) BS03 CA ? GO:0046872 ... A0A1S4NYF7 28180307
    27546 5tgx:C (2.3) BS03 CA ? GO:0046872 ... A0A1S4NYF7 28180307
    27547 5tgx:D (2.3) BS03 CA ? GO:0046872 ... A0A1S4NYF7 28180307
    27548 5th6:A (1.7) BS03 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    27549 5th6:A (1.7) BS04 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    27550 5th6:A (1.7) BS05 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    27551 5th6:B (1.7) BS03 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    27552 5th6:B (1.7) BS04 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    27553 5th6:B (1.7) BS05 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    27554 5th6:C (1.7) BS03 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    27555 5th6:C (1.7) BS04 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    27556 5th6:C (1.7) BS05 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    27557 5th6:D (1.7) BS03 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    27558 5th6:D (1.7) BS04 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    27559 5th6:D (1.7) BS05 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    27560 5th9:A (2.999) BS03 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    27561 5th9:A (2.999) BS04 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    27562 5th9:B (2.999) BS03 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    27563 5th9:B (2.999) BS04 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    27564 5th9:C (2.999) BS03 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    27565 5th9:C (2.999) BS04 CA 3.4.24.35 GO:0004222 ... P14780 28235803
    27566 5thg:A (3.106) BS03 CA N/A GO:0004519 ... N/A N/A
    27567 5thg:A (3.106) BS04 CA N/A GO:0004519 ... N/A N/A
    27568 5thg:D (3.106) BS03 CA N/A GO:0004519 ... N/A N/A
    27569 5thg:D (3.106) BS04 CA N/A GO:0004519 ... N/A N/A
    27570 5ti8:B (2.07) BS01 CA N/A GO:0008483 ... N/A 28045391
    27571 5tiw:A (1.66) BS03 CA ? GO:0046872 ... A0A094ZWQ2 28536265
    27572 5tiw:A (1.66) BS04 CA ? GO:0046872 ... A0A094ZWQ2 28536265
    27573 5tiw:B (1.66) BS01 CA ? GO:0046872 ... A0A094ZWQ2 28536265
    27574 5tiw:B (1.66) BS04 CA ? GO:0046872 ... A0A094ZWQ2 28536265
    27575 5tj6:A (3.5) BS01 CA ? GO:0005216 ... Q5QJC5 27974795
    27576 5tj6:A (3.5) BS02 CA ? GO:0005216 ... Q5QJC5 27974795
    27577 5tl8:A (1.71) BS03 CA ? GO:0004497 ... A0A2H4A2U9 N/A
    27578 5tl8:A (1.71) BS04 CA ? GO:0004497 ... A0A2H4A2U9 N/A
    27579 5tli:A (2.1) BS02 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    27580 5tli:A (2.1) BS03 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    27581 5tli:A (2.1) BS04 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    27582 5tli:A (2.1) BS05 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    27583 5tln:A (2.3) BS01 CA 3.4.24.27 GO:0004222 ... P00800 7317361
    27584 5tln:A (2.3) BS02 CA 3.4.24.27 GO:0004222 ... P00800 7317361
    27585 5tln:A (2.3) BS03 CA 3.4.24.27 GO:0004222 ... P00800 7317361
    27586 5tln:A (2.3) BS04 CA 3.4.24.27 GO:0004222 ... P00800 7317361
    27587 5tmn:E (1.6) BS02 CA 3.4.24.27 GO:0004222 ... P00800 3442675
    27588 5tmn:E (1.6) BS03 CA 3.4.24.27 GO:0004222 ... P00800 3442675
    27589 5tmn:E (1.6) BS04 CA 3.4.24.27 GO:0004222 ... P00800 3442675
    27590 5tmn:E (1.6) BS05 CA 3.4.24.27 GO:0004222 ... P00800 3442675
    27591 5tnc:A (2.0) BS01 CA ? GO:0005509 ... P10246 3210231
    27592 5tnc:A (2.0) BS02 CA ? GO:0005509 ... P10246 3210231
    27593 5tp0:A (1.25) BS01 CA 3.4.21.4 GO:0004252 ... P35030 28463992
    27594 5tpk:A (2.0) BS01 CA ? GO:0005509 ... Q99PJ1 32963095
    27595 5tpk:A (2.0) BS02 CA ? GO:0005509 ... Q99PJ1 32963095
    27596 5tpk:A (2.0) BS03 CA ? GO:0005509 ... Q99PJ1 32963095
    27597 5tpk:A (2.0) BS04 CA ? GO:0005509 ... Q99PJ1 32963095
    27598 5tqe:H (1.9) BS02 CA 3.4.21.21 GO:0004252 ... P08709 28105277
    27599 5tqf:H (1.85) BS02 CA 3.4.21.21 GO:0004252 ... P08709 28105277
    27600 5tqg:H (1.9) BS02 CA 3.4.21.21 GO:0004252 ... P08709 28105277
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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