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BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    27201 5szn:A (2.944) BS10 CA ? GO:0005509 ... Q91XX9 27782885
    27202 5szn:A (2.944) BS11 CA ? GO:0005509 ... Q91XX9 27782885
    27203 5szn:A (2.944) BS12 CA ? GO:0005509 ... Q91XX9 27782885
    27204 5szn:A (2.944) BS13 CA ? GO:0005509 ... Q91XX9 27782885
    27205 5szn:A (2.944) BS14 CA ? GO:0005509 ... Q91XX9 27782885
    27206 5szn:A (2.944) BS15 CA ? GO:0005509 ... Q91XX9 27782885
    27207 5szn:A (2.944) BS16 CA ? GO:0005509 ... Q91XX9 27782885
    27208 5szn:A (2.944) BS17 CA ? GO:0005509 ... Q91XX9 27782885
    27209 5szo:A (3.612) BS02 CA ? GO:0005509 ... Q91XX3 27782885
    27210 5szo:A (3.612) BS03 CA ? GO:0005509 ... Q91XX3 27782885
    27211 5szo:A (3.612) BS04 CA ? GO:0005509 ... Q91XX3 27782885
    27212 5szo:A (3.612) BS05 CA ? GO:0005509 ... Q91XX3 27782885
    27213 5szo:A (3.612) BS06 CA ? GO:0005509 ... Q91XX3 27782885
    27214 5szo:A (3.612) BS07 CA ? GO:0005509 ... Q91XX3 27782885
    27215 5szo:A (3.612) BS08 CA ? GO:0005509 ... Q91XX3 27782885
    27216 5szo:A (3.612) BS09 CA ? GO:0005509 ... Q91XX3 27782885
    27217 5szo:A (3.612) BS10 CA ? GO:0005509 ... Q91XX3 27782885
    27218 5szo:B (3.612) BS01 CA ? GO:0005509 ... Q91XX3 27782885
    27219 5szo:B (3.612) BS02 CA ? GO:0005509 ... Q91XX3 27782885
    27220 5szo:B (3.612) BS03 CA ? GO:0005509 ... Q91XX3 27782885
    27221 5szo:B (3.612) BS04 CA ? GO:0005509 ... Q91XX3 27782885
    27222 5szo:B (3.612) BS05 CA ? GO:0005509 ... Q91XX3 27782885
    27223 5szo:B (3.612) BS06 CA ? GO:0005509 ... Q91XX3 27782885
    27224 5szo:B (3.612) BS07 CA ? GO:0005509 ... Q91XX3 27782885
    27225 5szo:B (3.612) BS08 CA ? GO:0005509 ... Q91XX3 27782885
    27226 5szo:B (3.612) BS09 CA ? GO:0005509 ... Q91XX3 27782885
    27227 5szp:A (3.1) BS01 CA ? GO:0005509 ... Q91XX3 27782885
    27228 5szp:A (3.1) BS02 CA ? GO:0005509 ... Q91XX3 27782885
    27229 5szp:A (3.1) BS03 CA ? GO:0005509 ... Q91XX3 27782885
    27230 5szp:A (3.1) BS04 CA ? GO:0005509 ... Q91XX3 27782885
    27231 5szp:A (3.1) BS05 CA ? GO:0005509 ... Q91XX3 27782885
    27232 5szp:A (3.1) BS06 CA ? GO:0005509 ... Q91XX3 27782885
    27233 5szp:A (3.1) BS07 CA ? GO:0005509 ... Q91XX3 27782885
    27234 5szp:A (3.1) BS08 CA ? GO:0005509 ... Q91XX3 27782885
    27235 5szp:A (3.1) BS09 CA ? GO:0005509 ... Q91XX3 27782885
    27236 5szp:B (3.1) BS01 CA ? GO:0005509 ... Q91XX3 27782885
    27237 5szp:B (3.1) BS02 CA ? GO:0005509 ... Q91XX3 27782885
    27238 5szp:B (3.1) BS03 CA ? GO:0005509 ... Q91XX3 27782885
    27239 5szp:B (3.1) BS04 CA ? GO:0005509 ... Q91XX3 27782885
    27240 5szp:B (3.1) BS05 CA ? GO:0005509 ... Q91XX3 27782885
    27241 5szp:B (3.1) BS06 CA ? GO:0005509 ... Q91XX3 27782885
    27242 5szp:B (3.1) BS07 CA ? GO:0005509 ... Q91XX3 27782885
    27243 5szp:B (3.1) BS08 CA ? GO:0005509 ... Q91XX3 27782885
    27244 5szp:B (3.1) BS09 CA ? GO:0005509 ... Q91XX3 27782885
    27245 5szq:A (2.608) BS05 CA ? GO:0005509 ... Q91XY4 27782885
    27246 5szq:A (2.608) BS06 CA ? GO:0005509 ... Q91XY4 27782885
    27247 5szq:A (2.608) BS07 CA ? GO:0005509 ... Q91XY4 27782885
    27248 5szq:A (2.608) BS08 CA ? GO:0005509 ... Q91XY4 27782885
    27249 5szq:A (2.608) BS09 CA ? GO:0005509 ... Q91XY4 27782885
    27250 5szq:A (2.608) BS10 CA ? GO:0005509 ... Q91XY4 27782885
    27251 5szq:A (2.608) BS11 CA ? GO:0005509 ... Q91XY4 27782885
    27252 5szq:A (2.608) BS12 CA ? GO:0005509 ... Q91XY4 27782885
    27253 5szq:A (2.608) BS13 CA ? GO:0005509 ... Q91XY4 27782885
    27254 5szr:A (2.3) BS01 CA ? GO:0005509 ... Q91XX7 27782885
    27255 5szr:A (2.3) BS02 CA ? GO:0005509 ... Q91XX7 27782885
    27256 5szr:A (2.3) BS03 CA ? GO:0005509 ... Q91XX7 27782885
    27257 5szr:A (2.3) BS04 CA ? GO:0005509 ... Q91XX7 27782885
    27258 5szr:A (2.3) BS05 CA ? GO:0005509 ... Q91XX7 27782885
    27259 5szr:A (2.3) BS06 CA ? GO:0005509 ... Q91XX7 27782885
    27260 5szr:A (2.3) BS07 CA ? GO:0005509 ... Q91XX7 27782885
    27261 5szr:A (2.3) BS08 CA ? GO:0005509 ... Q91XX7 27782885
    27262 5szr:A (2.3) BS09 CA ? GO:0005509 ... Q91XX7 27782885
    27263 5szr:B (2.3) BS01 CA ? GO:0005509 ... Q91XX7 27782885
    27264 5szr:B (2.3) BS02 CA ? GO:0005509 ... Q91XX7 27782885
    27265 5szr:B (2.3) BS03 CA ? GO:0005509 ... Q91XX7 27782885
    27266 5szr:B (2.3) BS04 CA ? GO:0005509 ... Q91XX7 27782885
    27267 5szr:B (2.3) BS05 CA ? GO:0005509 ... Q91XX7 27782885
    27268 5szr:B (2.3) BS06 CA ? GO:0005509 ... Q91XX7 27782885
    27269 5szr:B (2.3) BS07 CA ? GO:0005509 ... Q91XX7 27782885
    27270 5szr:B (2.3) BS08 CA ? GO:0005509 ... Q91XX7 27782885
    27271 5szr:B (2.3) BS09 CA ? GO:0005509 ... Q91XX7 27782885
    27272 5szr:C (2.3) BS01 CA ? GO:0005509 ... Q91XX7 27782885
    27273 5szr:C (2.3) BS02 CA ? GO:0005509 ... Q91XX7 27782885
    27274 5szr:C (2.3) BS03 CA ? GO:0005509 ... Q91XX7 27782885
    27275 5szr:C (2.3) BS04 CA ? GO:0005509 ... Q91XX7 27782885
    27276 5szr:C (2.3) BS05 CA ? GO:0005509 ... Q91XX7 27782885
    27277 5szr:C (2.3) BS06 CA ? GO:0005509 ... Q91XX7 27782885
    27278 5szr:C (2.3) BS07 CA ? GO:0005509 ... Q91XX7 27782885
    27279 5szr:C (2.3) BS08 CA ? GO:0005509 ... Q91XX7 27782885
    27280 5szr:C (2.3) BS09 CA ? GO:0005509 ... Q91XX7 27782885
    27281 5t0x:A (-1.00) BS03 CA ? GO:0005102 ... P0DP33 N/A
    27282 5t0x:A (-1.00) BS04 CA ? GO:0005102 ... P0DP33 N/A
    27283 5t0x:A (-1.00) BS05 CA ? GO:0005102 ... P0DP33 N/A
    27284 5t0x:A (-1.00) BS06 CA ? GO:0005102 ... P0DP33 N/A
    27285 5t15:B (3.6) BS02 CA ? GO:0003151 ... P11716 27662087
    27286 5t15:E (3.6) BS02 CA ? GO:0003151 ... P11716 27662087
    27287 5t15:G (3.6) BS02 CA ? GO:0003151 ... P11716 27662087
    27288 5t15:I (3.6) BS02 CA ? GO:0003151 ... P11716 27662087
    27289 5t2h:A (2.517) BS03 CA N/A GO:0004519 ... N/A 28637173
    27290 5t2h:A (2.517) BS04 CA N/A GO:0004519 ... N/A 28637173
    27291 5t2n:A (2.079) BS03 CA N/A GO:0004519 ... N/A 28637173
    27292 5t2n:A (2.079) BS04 CA N/A GO:0004519 ... N/A 28637173
    27293 5t2n:A (2.079) BS05 CA N/A GO:0004519 ... N/A 28637173
    27294 5t2o:A (2.801) BS03 CA N/A GO:0004519 ... N/A 28637173
    27295 5t2o:A (2.801) BS04 CA N/A GO:0004519 ... N/A 28637173
    27296 5t3h:A (1.55) BS01 CA 3.4.21.4 GO:0004175 ... P00760 27841370
    27297 5t4m:A (2.24) BS01 CA ? GO:0005509 ... Q96QU1 28238533
    27298 5t4m:A (2.24) BS02 CA ? GO:0005509 ... Q96QU1 28238533
    27299 5t4m:A (2.24) BS03 CA ? GO:0005509 ... Q96QU1 28238533
    27300 5t4m:A (2.24) BS04 CA ? GO:0005509 ... Q96QU1 28238533
    27301 5t4m:A (2.24) BS05 CA ? GO:0005509 ... Q96QU1 28238533
    27302 5t4m:B (2.24) BS01 CA ? GO:0005509 ... Q96QU1 28238533
    27303 5t4m:B (2.24) BS02 CA ? GO:0005509 ... Q96QU1 28238533
    27304 5t4m:B (2.24) BS03 CA ? GO:0005509 ... Q96QU1 28238533
    27305 5t4m:B (2.24) BS04 CA ? GO:0005509 ... Q96QU1 28238533
    27306 5t4m:B (2.24) BS05 CA ? GO:0005509 ... Q96QU1 28238533
    27307 5t4n:A (2.701) BS01 CA ? GO:0005509 ... Q96QU1 28238533
    27308 5t4n:A (2.701) BS02 CA ? GO:0005509 ... Q96QU1 28238533
    27309 5t4n:A (2.701) BS03 CA ? GO:0005509 ... Q96QU1 28238533
    27310 5t4n:A (2.701) BS04 CA ? GO:0005509 ... Q96QU1 28238533
    27311 5t4n:A (2.701) BS05 CA ? GO:0005509 ... Q96QU1 28238533
    27312 5t4n:B (2.701) BS01 CA ? GO:0005509 ... Q96QU1 28238533
    27313 5t4n:B (2.701) BS02 CA ? GO:0005509 ... Q96QU1 28238533
    27314 5t4n:B (2.701) BS03 CA ? GO:0005509 ... Q96QU1 28238533
    27315 5t4n:B (2.701) BS04 CA ? GO:0005509 ... Q96QU1 28238533
    27316 5t4n:B (2.701) BS05 CA ? GO:0005509 ... Q96QU1 28238533
    27317 5t4z:L (1.991) BS01 CA N/A N/A N/A 28249163
    27318 5t50:A (1.43) BS01 CA ? GO:0005576 ... P86993 27973758
    27319 5t50:A (1.43) BS02 CA ? GO:0005576 ... P86993 27973758
    27320 5t50:B (1.43) BS01 CA ? GO:0005576 ... P86993 27973758
    27321 5t50:B (1.43) BS02 CA ? GO:0005576 ... P86993 27973758
    27322 5t52:A (1.7) BS01 CA ? GO:0005576 ... P86993 27973758
    27323 5t52:A (1.7) BS02 CA ? GO:0005576 ... P86993 27973758
    27324 5t52:B (1.7) BS01 CA ? GO:0005576 ... P86993 27973758
    27325 5t52:B (1.7) BS02 CA ? GO:0005576 ... P86993 27973758
    27326 5t54:A (1.65) BS02 CA ? GO:0005576 ... P86993 27973758
    27327 5t54:A (1.65) BS03 CA ? GO:0005576 ... P86993 27973758
    27328 5t54:B (1.65) BS02 CA ? GO:0005576 ... P86993 27973758
    27329 5t54:B (1.65) BS03 CA ? GO:0005576 ... P86993 27973758
    27330 5t55:A (1.43) BS01 CA ? GO:0005576 ... P86993 27973758
    27331 5t55:A (1.43) BS02 CA ? GO:0005576 ... P86993 27973758
    27332 5t55:B (1.43) BS01 CA ? GO:0005576 ... P86993 27973758
    27333 5t55:B (1.43) BS02 CA ? GO:0005576 ... P86993 27973758
    27334 5t57:A (1.65) BS02 CA 1.1.1.421 GO:0000166 ... F8GV06 N/A
    27335 5t5i:C (1.9) BS01 CA 1.2.7.12 GO:0015948 ... O74031 27846502
    27336 5t5i:K (1.9) BS01 CA 1.2.7.12 GO:0015948 ... O74031 27846502
    27337 5t5j:A (1.35) BS02 CA ? GO:0005576 ... P86993 27973758
    27338 5t5j:A (1.35) BS03 CA ? GO:0005576 ... P86993 27973758
    27339 5t5j:B (1.35) BS01 CA ? GO:0005576 ... P86993 27973758
    27340 5t5j:B (1.35) BS02 CA ? GO:0005576 ... P86993 27973758
    27341 5t5l:A (1.17) BS01 CA ? GO:0005576 ... P86993 27973758
    27342 5t5l:A (1.17) BS02 CA ? GO:0005576 ... P86993 27973758
    27343 5t5l:B (1.17) BS01 CA ? GO:0005576 ... P86993 27973758
    27344 5t5l:B (1.17) BS02 CA ? GO:0005576 ... P86993 27973758
    27345 5t5n:A (3.1) BS03 CA N/A GO:0005254 ... N/A 27821745
    27346 5t5n:B (3.1) BS02 CA N/A GO:0005254 ... N/A 27821745
    27347 5t5n:C (3.1) BS02 CA N/A GO:0005254 ... N/A 27821745
    27348 5t5n:D (3.1) BS02 CA N/A GO:0005254 ... N/A 27821745
    27349 5t5n:E (3.1) BS01 CA N/A GO:0005254 ... N/A 27821745
    27350 5t5o:A (2.75) BS02 CA ? GO:0005576 ... P86993 27973758
    27351 5t5o:A (2.75) BS03 CA ? GO:0005576 ... P86993 27973758
    27352 5t5o:B (2.75) BS03 CA ? GO:0005576 ... P86993 27973758
    27353 5t5o:B (2.75) BS04 CA ? GO:0005576 ... P86993 27973758
    27354 5t5o:C (2.75) BS03 CA ? GO:0005576 ... P86993 27973758
    27355 5t5o:C (2.75) BS04 CA ? GO:0005576 ... P86993 27973758
    27356 5t5o:D (2.75) BS02 CA ? GO:0005576 ... P86993 27973758
    27357 5t5o:D (2.75) BS03 CA ? GO:0005576 ... P86993 27973758
    27358 5t5o:E (2.75) BS02 CA ? GO:0005576 ... P86993 27973758
    27359 5t5o:E (2.75) BS03 CA ? GO:0005576 ... P86993 27973758
    27360 5t5o:F (2.75) BS03 CA ? GO:0005576 ... P86993 27973758
    27361 5t5o:F (2.75) BS04 CA ? GO:0005576 ... P86993 27973758
    27362 5t5o:G (2.75) BS03 CA ? GO:0005576 ... P86993 27973758
    27363 5t5o:G (2.75) BS04 CA ? GO:0005576 ... P86993 27973758
    27364 5t5o:H (2.75) BS02 CA ? GO:0005576 ... P86993 27973758
    27365 5t5o:H (2.75) BS03 CA ? GO:0005576 ... P86993 27973758
    27366 5t5o:I (2.75) BS03 CA ? GO:0005576 ... P86993 27973758
    27367 5t5o:I (2.75) BS04 CA ? GO:0005576 ... P86993 27973758
    27368 5t5o:J (2.75) BS03 CA ? GO:0005576 ... P86993 27973758
    27369 5t5o:J (2.75) BS04 CA ? GO:0005576 ... P86993 27973758
    27370 5t5p:A (1.66) BS02 CA ? GO:0005576 ... P86993 27973758
    27371 5t5p:A (1.66) BS03 CA ? GO:0005576 ... P86993 27973758
    27372 5t5p:B (1.66) BS02 CA ? GO:0005576 ... P86993 27973758
    27373 5t5p:B (1.66) BS03 CA ? GO:0005576 ... P86993 27973758
    27374 5t77:A (2.0) BS02 CA ? GO:0005886 ... B7IE18 28024149
    27375 5t7p:A (2.16) BS02 CA ? GO:0005537 ... P02867 28754321
    27376 5t7p:B (2.16) BS02 CA ? GO:0005537 ... P02867 28754321
    27377 5t8d:A (2.15) BS03 CA N/A GO:0004519 ... N/A 28873986
    27378 5t8d:A (2.15) BS04 CA N/A GO:0004519 ... N/A 28873986
    27379 5t8d:A (2.15) BS05 CA N/A GO:0004519 ... N/A 28873986
    27380 5t91:A (1.53) BS01 CA 3.1.4.46 GO:0005576 ... P37965 27780866
    27381 5t9b:G (1.62) BS01 CA 3.1.4.46 GO:0005576 ... P37965 27780866
    27382 5t9c:E (1.48) BS01 CA 3.1.4.46 GO:0005576 ... P37965 27780866
    27383 5t9i:A (2.091) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27384 5t9i:A (2.091) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27385 5t9i:A (2.091) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27386 5t9i:A (2.091) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27387 5t9k:A (2.1) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27388 5t9k:A (2.1) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27389 5t9k:A (2.1) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27390 5t9k:A (2.1) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27391 5t9m:B (4.0) BS02 CA ? GO:0003151 ... P11716 27662087
    27392 5t9m:E (4.0) BS02 CA ? GO:0003151 ... P11716 27662087
    27393 5t9m:G (4.0) BS02 CA ? GO:0003151 ... P11716 27662087
    27394 5t9m:I (4.0) BS02 CA ? GO:0003151 ... P11716 27662087
    27395 5t9n:B (3.8) BS02 CA ? GO:0003151 ... P11716 27662087
    27396 5t9n:E (3.8) BS02 CA ? GO:0003151 ... P11716 27662087
    27397 5t9n:G (3.8) BS02 CA ? GO:0003151 ... P11716 27662087
    27398 5t9n:I (3.8) BS02 CA ? GO:0003151 ... P11716 27662087
    27399 5t9q:A (2.1) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27400 5t9q:A (2.1) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218