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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    26801 5odu:D (1.56) BS02 CA ? GO:0030246 ... Q7N561 28972138
    26802 5odu:E (1.56) BS02 CA ? GO:0030246 ... Q7N561 28972138
    26803 5odu:F (1.56) BS02 CA ? GO:0030246 ... Q7N561 28972138
    26804 5odu:G (1.56) BS02 CA ? GO:0030246 ... Q7N561 28972138
    26805 5odu:H (1.56) BS02 CA ? GO:0030246 ... Q7N561 28972138
    26806 5oeo:A (-1.00) BS01 CA ? GO:0000086 ... P0DP23 29584409
    26807 5oeo:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23 29584409
    26808 5of0:A (1.48) BS04 CA 3.4.17.21 GO:0004180 ... Q04609 30429952
    26809 5ofi:A (2.0) BS01 CA ? GO:0030246 ... Q7N561 28972138
    26810 5ofi:B (2.0) BS01 CA ? GO:0030246 ... Q7N561 28972138
    26811 5ofi:C (2.0) BS01 CA ? GO:0030246 ... Q7N561 28972138
    26812 5ofi:D (2.0) BS01 CA ? GO:0030246 ... Q7N561 28972138
    26813 5ofi:E (2.0) BS01 CA ? GO:0030246 ... Q7N561 28972138
    26814 5ofi:F (2.0) BS01 CA ? GO:0030246 ... Q7N561 28972138
    26815 5ofi:G (2.0) BS01 CA ? GO:0030246 ... Q7N561 28972138
    26816 5ofi:H (2.0) BS01 CA ? GO:0030246 ... Q7N561 28972138
    26817 5ofx:A (1.75) BS04 CA ? GO:0030246 ... Q7N561 28972138
    26818 5ofx:B (1.75) BS03 CA ? GO:0030246 ... Q7N561 28972138
    26819 5ofx:C (1.75) BS02 CA ? GO:0030246 ... Q7N561 28972138
    26820 5ofx:D (1.75) BS02 CA ? GO:0030246 ... Q7N561 28972138
    26821 5ofx:E (1.75) BS03 CA ? GO:0030246 ... Q7N561 28972138
    26822 5ofx:F (1.75) BS02 CA ? GO:0030246 ... Q7N561 28972138
    26823 5ofx:G (1.75) BS01 CA ? GO:0030246 ... Q7N561 28972138
    26824 5ofx:H (1.75) BS02 CA ? GO:0030246 ... Q7N561 28972138
    26825 5ohi:A (1.66) BS05 CA 3.1.4.39 GO:0003676 ... Q9R1E6 29259743
    26826 5oht:A (1.87) BS01 CA 3.2.1.199 GO:0003824 ... P32138 30276262
    26827 5oht:B (1.87) BS01 CA 3.2.1.199 GO:0003824 ... P32138 30276262
    26828 5ol2:A (3.1) BS02 CA ? GO:0000166 ... A0A125V455 29146947
    26829 5ol2:C (3.1) BS03 CA 1.3.8.1 GO:0000166 ... A0A125V4E7 29146947
    26830 5ol2:D (3.1) BS02 CA ? GO:0000166 ... A0A125V455 29146947
    26831 5ol2:F (3.1) BS05 CA 1.3.8.1 GO:0000166 ... A0A125V4E7 29146947
    26832 5ol7:A (1.6) BS01 CA 2.7.7.7 GO:0016539 ... B2J066
    B2J821    		 28914478
    26833 5olb:A (1.82) BS04 CA 3.1.4.39 GO:0003676 ... Q9R1E6 29259743
    26834 5olp:A (2.0) BS01 CA 3.2.1.22
    3.2.1.n1    		 GO:0003824 ... Q8A066 29255254
    26835 5olp:A (2.0) BS02 CA 3.2.1.22
    3.2.1.n1    		 GO:0003824 ... Q8A066 29255254
    26836 5olp:B (2.0) BS01 CA 3.2.1.22
    3.2.1.n1    		 GO:0003824 ... Q8A066 29255254
    26837 5olp:B (2.0) BS02 CA 3.2.1.22
    3.2.1.n1    		 GO:0003824 ... Q8A066 29255254
    26838 5olq:A (1.48) BS01 CA 3.2.1.22
    3.2.1.n1    		 GO:0004557 ... Q8A051 29255254
    26839 5olq:B (1.48) BS01 CA 3.2.1.22
    3.2.1.n1    		 GO:0004557 ... Q8A051 29255254
    26840 5olq:C (1.48) BS01 CA 3.2.1.22
    3.2.1.n1    		 GO:0004557 ... Q8A051 29255254
    26841 5olr:A (1.07) BS03 CA 3.2.1.22
    3.2.1.n1    		 GO:0004557 ... Q8A051 29255254
    26842 5olr:A (1.07) BS04 CA 3.2.1.22
    3.2.1.n1    		 GO:0004557 ... Q8A051 29255254
    26843 5olr:B (1.07) BS03 CA 3.2.1.22
    3.2.1.n1    		 GO:0004557 ... Q8A051 29255254
    26844 5olr:B (1.07) BS04 CA 3.2.1.22
    3.2.1.n1    		 GO:0004557 ... Q8A051 29255254
    26845 5olr:C (1.07) BS03 CA 3.2.1.22
    3.2.1.n1    		 GO:0004557 ... Q8A051 29255254
    26846 5olr:C (1.07) BS04 CA 3.2.1.22
    3.2.1.n1    		 GO:0004557 ... Q8A051 29255254
    26847 5ols:A (2.2) BS06 CA 3.2.1.22
    3.2.1.n1    		 GO:0004557 ... Q8A051 29255254
    26848 5ols:A (2.2) BS07 CA 3.2.1.22
    3.2.1.n1    		 GO:0004557 ... Q8A051 29255254
    26849 5olw:A (2.28) BS01 CA 5.4.2.6 GO:0000287 ... P71447 29619190
    26850 5olw:A (2.28) BS02 CA 5.4.2.6 GO:0000287 ... P71447 29619190
    26851 5olw:A (2.28) BS03 CA 5.4.2.6 GO:0000287 ... P71447 29619190
    26852 5olw:B (2.28) BS01 CA 5.4.2.6 GO:0000287 ... P71447 29619190
    26853 5olw:B (2.28) BS02 CA 5.4.2.6 GO:0000287 ... P71447 29619190
    26854 5onp:A (1.34) BS02 CA 3.4.24.27 GO:0004222 ... P43133 30403288
    26855 5onp:A (1.34) BS03 CA 3.4.24.27 GO:0004222 ... P43133 30403288
    26856 5onp:A (1.34) BS04 CA 3.4.24.27 GO:0004222 ... P43133 30403288
    26857 5onq:A (1.17) BS02 CA 3.4.24.27 GO:0004222 ... P43133 30403288
    26858 5onr:A (1.39) BS02 CA 3.4.24.27 GO:0004222 ... P00800 30403288
    26859 5onr:A (1.39) BS03 CA 3.4.24.27 GO:0004222 ... P00800 30403288
    26860 5onr:A (1.39) BS04 CA 3.4.24.27 GO:0004222 ... P00800 30403288
    26861 5onr:A (1.39) BS05 CA 3.4.24.27 GO:0004222 ... P00800 30403288
    26862 5osk:C (2.11) BS02 CA 3.6.5.- GO:0000226 ... P81947 29227648
    26863 5osq:A (2.05) BS03 CA ? GO:0005515 ... P0AEX9
    P10761    		 19052627
    26864 5osq:A (2.05) BS04 CA ? GO:0005515 ... P0AEX9
    P10761    		 19052627
    26865 5osq:A (2.05) BS05 CA ? GO:0005515 ... P0AEX9
    P10761    		 19052627
    26866 5osq:B (2.05) BS03 CA ? GO:0005515 ... P0AEX9
    P10761    		 19052627
    26867 5osq:B (2.05) BS04 CA ? GO:0005515 ... P0AEX9
    P10761    		 19052627
    26868 5ost:A (2.1) BS01 CA 3.2.1.45 GO:0004348 ... F6BL85 29601200
    26869 5ot1:A (2.8) BS01 CA ? GO:0005975 ... Q5JID9 29652257
    26870 5otj:C (2.35) BS01 CA ? GO:0005509 ... O82040 30150373
    26871 5otj:C (2.35) BS02 CA ? GO:0005509 ... O82040 30150373
    26872 5otj:D (2.35) BS01 CA ? GO:0005509 ... O82040 30150373
    26873 5otj:D (2.35) BS02 CA ? GO:0005509 ... O82040 30150373
    26874 5otn:A (0.99) BS02 CA 3.6.1.-
    3.6.1.56    		 GO:0003723 ... Q7ZWC3 30304478
    26875 5otn:A (0.99) BS03 CA 3.6.1.-
    3.6.1.56    		 GO:0003723 ... Q7ZWC3 30304478
    26876 5ov7:A (2.402) BS02 CA 3.6.5.- GO:0000226 ... P81947 28985505
    26877 5ow8:A (1.9) BS01 CA 3.1.1.4 GO:0001516 ... O15496 30034585
    26878 5ow8:B (1.9) BS01 CA 3.1.1.4 GO:0001516 ... O15496 30034585
    26879 5owc:A (1.75) BS01 CA 3.1.1.4 GO:0001516 ... O15496 30034585
    26880 5owc:B (1.75) BS01 CA 3.1.1.4 GO:0001516 ... O15496 30034585
    26881 5owo:A (1.79) BS05 CA ? N/A Q14204 29420470
    26882 5owo:C (1.79) BS01 CA ? N/A Q14204 29420470
    26883 5owo:D (1.79) BS03 CA ? N/A Q14204 29420470
    26884 5oxg:A (2.13) BS02 CA 2.7.11.30 GO:0004672 ... Q04771 28918311
    26885 5oxg:B (2.13) BS02 CA 2.7.11.30 GO:0004672 ... Q04771 28918311
    26886 5oxg:C (2.13) BS02 CA 2.7.11.30 GO:0004672 ... Q04771 28918311
    26887 5oxg:D (2.13) BS02 CA 2.7.11.30 GO:0004672 ... Q04771 28918311
    26888 5oxr:A (1.75) BS01 CA ? N/A P35247 29912941
    26889 5oxr:A (1.75) BS02 CA ? N/A P35247 29912941
    26890 5oxr:A (1.75) BS03 CA ? N/A P35247 29912941
    26891 5oxr:B (1.75) BS03 CA ? N/A P35247 29912941
    26892 5oxr:B (1.75) BS04 CA ? N/A P35247 29912941
    26893 5oxr:B (1.75) BS05 CA ? N/A P35247 29912941
    26894 5oxr:C (1.75) BS03 CA ? N/A P35247 29912941
    26895 5oxr:C (1.75) BS04 CA ? N/A P35247 29912941
    26896 5oxr:C (1.75) BS05 CA ? N/A P35247 29912941
    26897 5oxs:A (1.65) BS02 CA ? N/A P35247 29912941
    26898 5oxs:A (1.65) BS03 CA ? N/A P35247 29912941
    26899 5oxs:B (1.65) BS03 CA ? N/A P35247 29912941
    26900 5oxs:B (1.65) BS04 CA ? N/A P35247 29912941
    26901 5oxs:C (1.65) BS03 CA ? N/A P35247 29912941
    26902 5oy0:0 (2.501) BS06 CA ? GO:0005886 ... P37277 29414678
    26903 5oy0:2 (2.501) BS48 CA 1.97.1.12 GO:0000287 ... P29255 29414678
    26904 5oy0:B (2.501) BS50 CA 1.97.1.12 GO:0000287 ... P29255 29414678
    26905 5oy0:L (2.501) BS05 CA ? GO:0005886 ... P37277 29414678
    26906 5oy0:b (2.501) BS50 CA 1.97.1.12 GO:0000287 ... P29255 29414678
    26907 5oy0:l (2.501) BS06 CA ? GO:0005886 ... P37277 29414678
    26908 5oy9:D (3.6) BS01 CA ? N/A P01130 29531262
    26909 5oyb:A (3.75) BS01 CA ? GO:0005229 ... Q8BHY3 29236691
    26910 5oyb:A (3.75) BS02 CA ? GO:0005229 ... Q8BHY3 29236691
    26911 5oyb:B (3.75) BS01 CA ? GO:0005229 ... Q8BHY3 29236691
    26912 5oyb:B (3.75) BS02 CA ? GO:0005229 ... Q8BHY3 29236691
    26913 5oyh:A (2.249) BS02 CA ? GO:0009190 ... A0A1Y2HEJ3 29799525
    26914 5oyh:B (2.249) BS03 CA ? GO:0009190 ... A0A1Y2HEJ3 29799525
    26915 5oyh:C (2.249) BS02 CA ? GO:0009190 ... A0A1Y2HEJ3 29799525
    26916 5oyh:D (2.249) BS03 CA ? GO:0009190 ... A0A1Y2HEJ3 29799525
    26917 5oyh:E (2.249) BS02 CA ? GO:0009190 ... A0A1Y2HEJ3 29799525
    26918 5oyh:F (2.249) BS03 CA ? GO:0009190 ... A0A1Y2HEJ3 29799525
    26919 5oyh:G (2.249) BS02 CA ? GO:0009190 ... A0A1Y2HEJ3 29799525
    26920 5oyh:H (2.249) BS03 CA ? GO:0009190 ... A0A1Y2HEJ3 29799525
    26921 5oyh:I (2.249) BS02 CA ? GO:0009190 ... A0A1Y2HEJ3 29799525
    26922 5oyh:J (2.249) BS03 CA ? GO:0009190 ... A0A1Y2HEJ3 29799525
    26923 5oyh:K (2.249) BS02 CA ? GO:0009190 ... A0A1Y2HEJ3 29799525
    26924 5oyh:L (2.249) BS03 CA ? GO:0009190 ... A0A1Y2HEJ3 29799525
    26925 5oyh:M (2.249) BS02 CA ? GO:0009190 ... A0A1Y2HEJ3 29799525
    26926 5oyh:N (2.249) BS03 CA ? GO:0009190 ... A0A1Y2HEJ3 29799525
    26927 5oyh:O (2.249) BS02 CA ? GO:0009190 ... A0A1Y2HEJ3 29799525
    26928 5oyh:P (2.249) BS03 CA ? GO:0009190 ... A0A1Y2HEJ3 29799525
    26929 5oyj:A (2.38) BS01 CA N/A N/A N/A 29502220
    26930 5oyl:A (2.25) BS01 CA ? GO:0019031 ... B7UCZ5 29531262
    26931 5oyl:D (2.25) BS01 CA ? N/A P01130 29531262
    26932 5p2p:A (2.4) BS01 CA 3.1.1.4 GO:0002446 ... P00592 2215698
    26933 5p2p:A (2.4) BS03 CA 3.1.1.4 GO:0002446 ... P00592 2215698
    26934 5p2p:B (2.4) BS01 CA 3.1.1.4 GO:0002446 ... P00592 2215698
    26935 5p2p:B (2.4) BS02 CA 3.1.1.4 GO:0002446 ... P00592 2215698
    26936 5pa8:C (1.98) BS01 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    26937 5pa9:C (1.55) BS01 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    26938 5paa:C (1.98) BS01 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    26939 5pab:H (1.99) BS02 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    26940 5pac:B (1.5) BS02 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    26941 5pae:B (1.45) BS02 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    26942 5paf:B (1.5) BS01 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    26943 5pag:B (1.36) BS02 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    26944 5pai:B (1.73) BS01 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    26945 5paj:B (1.7) BS02 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    26946 5pak:C (1.56) BS01 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    26947 5pal:A (1.54) BS01 CA ? GO:0005509 ... P30563 1542115
    26948 5pal:A (1.54) BS02 CA ? GO:0005509 ... P30563 1542115
    26949 5pam:B (1.6) BS01 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    26950 5pan:B (1.62) BS01 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    26951 5pao:C (1.4) BS01 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    26952 5paq:B (1.59) BS01 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    26953 5par:C (2.1) BS01 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    26954 5pas:C (1.48) BS02 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    26955 5pau:C (1.55) BS01 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    26956 5pav:C (1.4) BS01 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    26957 5paw:B (2.2) BS01 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    26958 5pax:C (1.36) BS01 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    26959 5pay:C (1.66) BS01 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    26960 5pb0:B (1.98) BS02 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    26961 5pb1:D (1.9) BS01 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    26962 5pb2:C (1.45) BS01 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    26963 5pb3:C (1.9) BS02 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    26964 5pb4:C (2.43) BS02 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    26965 5pb5:B (1.84) BS02 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    26966 5pb6:C (1.9) BS01 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    26967 5ptp:A (1.34) BS01 CA 3.4.21.4 GO:0004175 ... P00760 1557349
    26968 5qj2:B (2.82) BS06 CA 1.11.2.2 GO:0004601 ... P05164 30613322
    26969 5qj2:E (2.82) BS04 CA 1.11.2.2 GO:0004601 ... P05164 30613322
    26970 5qj2:G (2.82) BS05 CA 1.11.2.2 GO:0004601 ... P05164 30613322
    26971 5qj2:I (2.82) BS03 CA 1.11.2.2 GO:0004601 ... P05164 30613322
    26972 5qj3:B (2.76) BS03 CA 1.11.2.2 GO:0004601 ... P05164 30613322
    26973 5qj3:E (2.76) BS02 CA 1.11.2.2 GO:0004601 ... P05164 30613322
    26974 5s4l:A (2.3) BS02 CA 3.6.5.- GO:0000226 ... P81947 33951246
    26975 5s4l:C (2.3) BS02 CA 3.6.5.- GO:0000226 ... P81947 33951246
    26976 5s4m:A (2.15) BS02 CA 3.6.5.- GO:0000226 ... P81947 33951246
    26977 5s4m:C (2.15) BS02 CA 3.6.5.- GO:0000226 ... P81947 33951246
    26978 5s4n:A (2.53) BS02 CA 3.6.5.- GO:0000226 ... P81947 33951246
    26979 5s4n:C (2.53) BS02 CA 3.6.5.- GO:0000226 ... P81947 33951246
    26980 5s4o:A (2.3) BS02 CA 3.6.5.- GO:0000226 ... P81947 33951246
    26981 5s4o:C (2.3) BS02 CA 3.6.5.- GO:0000226 ... P81947 33951246
    26982 5s4p:A (2.29) BS02 CA 3.6.5.- GO:0000226 ... P81947 33951246
    26983 5s4p:C (2.29) BS03 CA 3.6.5.- GO:0000226 ... P81947 33951246
    26984 5s4q:A (2.59) BS02 CA 3.6.5.- GO:0000226 ... P81947 33951246
    26985 5s4q:C (2.59) BS02 CA 3.6.5.- GO:0000226 ... P81947 33951246
    26986 5s4r:A (2.35) BS02 CA 3.6.5.- GO:0000226 ... P81947 33951246
    26987 5s4r:C (2.35) BS02 CA 3.6.5.- GO:0000226 ... P81947 33951246
    26988 5s4s:C (2.35) BS03 CA 3.6.5.- GO:0000226 ... P81947 33951246
    26989 5s4t:A (2.27) BS02 CA 3.6.5.- GO:0000226 ... P81947 33951246
    26990 5s4t:C (2.27) BS02 CA 3.6.5.- GO:0000226 ... P81947 33951246
    26991 5s4u:A (2.39) BS02 CA 3.6.5.- GO:0000226 ... P81947 33951246
    26992 5s4u:C (2.39) BS02 CA 3.6.5.- GO:0000226 ... P81947 33951246
    26993 5s4v:A (2.3) BS02 CA 3.6.5.- GO:0000226 ... P81947 33951246
    26994 5s4v:C (2.3) BS03 CA 3.6.5.- GO:0000226 ... P81947 33951246
    26995 5s4w:A (2.8) BS02 CA 3.6.5.- GO:0000226 ... P81947 33951246
    26996 5s4w:C (2.8) BS02 CA 3.6.5.- GO:0000226 ... P81947 33951246
    26997 5s4x:A (2.53) BS02 CA 3.6.5.- GO:0000226 ... P81947 33951246
    26998 5s4x:C (2.53) BS02 CA 3.6.5.- GO:0000226 ... P81947 33951246
    26999 5s4y:A (2.3) BS02 CA 3.6.5.- GO:0000226 ... P81947 33951246
    27000 5s4y:C (2.3) BS02 CA 3.6.5.- GO:0000226 ... P81947 33951246
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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