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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    26601 5n97:E (7.4) BS07 CA ? GO:0005509 ... A0A0H3C8J1 28418382
    26602 5n97:E (7.4) BS08 CA ? GO:0005509 ... A0A0H3C8J1 28418382
    26603 5n97:E (7.4) BS09 CA ? GO:0005509 ... A0A0H3C8J1 28418382
    26604 5n97:E (7.4) BS10 CA ? GO:0005509 ... A0A0H3C8J1 28418382
    26605 5n97:E (7.4) BS11 CA ? GO:0005509 ... A0A0H3C8J1 28418382
    26606 5n97:E (7.4) BS12 CA ? GO:0005509 ... A0A0H3C8J1 28418382
    26607 5n97:E (7.4) BS13 CA ? GO:0005509 ... A0A0H3C8J1 28418382
    26608 5n97:E (7.4) BS14 CA ? GO:0005509 ... A0A0H3C8J1 28418382
    26609 5n97:E (7.4) BS15 CA ? GO:0005509 ... A0A0H3C8J1 28418382
    26610 5n97:E (7.4) BS16 CA ? GO:0005509 ... A0A0H3C8J1 28418382
    26611 5n97:E (7.4) BS17 CA ? GO:0005509 ... A0A0H3C8J1 28418382
    26612 5n97:E (7.4) BS18 CA ? GO:0005509 ... A0A0H3C8J1 28418382
    26613 5n97:F (7.4) BS01 CA ? GO:0005509 ... A0A0H3C8J1 28418382
    26614 5n97:F (7.4) BS02 CA ? GO:0005509 ... A0A0H3C8J1 28418382
    26615 5n97:F (7.4) BS03 CA ? GO:0005509 ... A0A0H3C8J1 28418382
    26616 5n97:F (7.4) BS04 CA ? GO:0005509 ... A0A0H3C8J1 28418382
    26617 5n97:F (7.4) BS05 CA ? GO:0005509 ... A0A0H3C8J1 28418382
    26618 5n97:F (7.4) BS06 CA ? GO:0005509 ... A0A0H3C8J1 28418382
    26619 5n97:F (7.4) BS07 CA ? GO:0005509 ... A0A0H3C8J1 28418382
    26620 5n97:F (7.4) BS08 CA ? GO:0005509 ... A0A0H3C8J1 28418382
    26621 5n97:F (7.4) BS09 CA ? GO:0005509 ... A0A0H3C8J1 28418382
    26622 5n97:F (7.4) BS10 CA ? GO:0005509 ... A0A0H3C8J1 28418382
    26623 5n97:F (7.4) BS11 CA ? GO:0005509 ... A0A0H3C8J1 28418382
    26624 5n97:F (7.4) BS12 CA ? GO:0005509 ... A0A0H3C8J1 28418382
    26625 5n97:F (7.4) BS13 CA ? GO:0005509 ... A0A0H3C8J1 28418382
    26626 5n97:F (7.4) BS14 CA ? GO:0005509 ... A0A0H3C8J1 28418382
    26627 5n97:F (7.4) BS15 CA ? GO:0005509 ... A0A0H3C8J1 28418382
    26628 5n97:F (7.4) BS16 CA ? GO:0005509 ... A0A0H3C8J1 28418382
    26629 5n97:F (7.4) BS17 CA ? GO:0005509 ... A0A0H3C8J1 28418382
    26630 5n97:F (7.4) BS18 CA ? GO:0005509 ... A0A0H3C8J1 28418382
    26631 5nbp:A (1.8) BS04 CA N/A GO:0004553 ... N/A 29020628
    26632 5nbp:B (1.8) BS04 CA N/A GO:0004553 ... N/A 29020628
    26633 5ncx:A () BS02 CA N/A N/A N/A N/A
    26634 5nem:A (10.8) BS01 CA ? GO:0007155 ... P06756 28534487
    26635 5nem:A (10.8) BS02 CA ? GO:0007155 ... P06756 28534487
    26636 5nem:A (10.8) BS03 CA ? GO:0007155 ... P06756 28534487
    26637 5nem:A (10.8) BS04 CA ? GO:0007155 ... P06756 28534487
    26638 5ner:A (11.5) BS01 CA ? GO:0007155 ... P06756 28534487
    26639 5ner:A (11.5) BS02 CA ? GO:0007155 ... P06756 28534487
    26640 5ner:A (11.5) BS03 CA ? GO:0007155 ... P06756 28534487
    26641 5ner:A (11.5) BS04 CA ? GO:0007155 ... P06756 28534487
    26642 5nes:A (1.606) BS02 CA ? GO:0030246 ... Q9HYN5 29163899
    26643 5nes:A (1.606) BS03 CA ? GO:0030246 ... Q9HYN5 29163899
    26644 5nes:B (1.606) BS02 CA ? GO:0030246 ... Q9HYN5 29163899
    26645 5nes:B (1.606) BS03 CA ? GO:0030246 ... Q9HYN5 29163899
    26646 5nes:C (1.606) BS01 CA ? GO:0030246 ... Q9HYN5 29163899
    26647 5nes:C (1.606) BS03 CA ? GO:0030246 ... Q9HYN5 29163899
    26648 5nes:D (1.606) BS01 CA ? GO:0030246 ... Q9HYN5 29163899
    26649 5nes:D (1.606) BS03 CA ? GO:0030246 ... Q9HYN5 29163899
    26650 5net:A (8.6) BS01 CA ? GO:0007155 ... P06756 28534487
    26651 5net:A (8.6) BS02 CA ? GO:0007155 ... P06756 28534487
    26652 5net:A (8.6) BS03 CA ? GO:0007155 ... P06756 28534487
    26653 5net:A (8.6) BS04 CA ? GO:0007155 ... P06756 28534487
    26654 5neu:B (12.3) BS02 CA ? N/A P18564 28534487
    26655 5neu:B (12.3) BS03 CA ? N/A P18564 28534487
    26656 5ney:A (1.55) BS02 CA ? GO:0030246 ... Q9HYN5 29163899
    26657 5ney:A (1.55) BS03 CA ? GO:0030246 ... Q9HYN5 29163899
    26658 5ney:B (1.55) BS02 CA ? GO:0030246 ... Q9HYN5 29163899
    26659 5ney:B (1.55) BS03 CA ? GO:0030246 ... Q9HYN5 29163899
    26660 5ney:C (1.55) BS02 CA ? GO:0030246 ... Q9HYN5 29163899
    26661 5ney:C (1.55) BS03 CA ? GO:0030246 ... Q9HYN5 29163899
    26662 5ney:D (1.55) BS02 CA ? GO:0030246 ... Q9HYN5 29163899
    26663 5ney:D (1.55) BS03 CA ? GO:0030246 ... Q9HYN5 29163899
    26664 5nf0:A (1.271) BS01 CA ? GO:0030246 ... Q9HYN5 29163899
    26665 5nf0:A (1.271) BS02 CA ? GO:0030246 ... Q9HYN5 29163899
    26666 5nf0:B (1.271) BS02 CA ? GO:0030246 ... Q9HYN5 29163899
    26667 5nf0:B (1.271) BS03 CA ? GO:0030246 ... Q9HYN5 29163899
    26668 5nf0:C (1.271) BS02 CA ? GO:0030246 ... Q9HYN5 29163899
    26669 5nf0:C (1.271) BS03 CA ? GO:0030246 ... Q9HYN5 29163899
    26670 5nf0:D (1.271) BS02 CA ? GO:0030246 ... Q9HYN5 29163899
    26671 5nf0:D (1.271) BS03 CA ? GO:0030246 ... Q9HYN5 29163899
    26672 5nf2:A (1.73) BS01 CA ? GO:0009418 ... B2RHG1 29379120
    26673 5nf3:A (1.97) BS01 CA ? GO:0009279 ... B2RHG1 29379120
    26674 5nfz:A (2.1) BS02 CA 3.6.5.- GO:0000226 ... P81947 29023132
    26675 5nfz:C (2.1) BS02 CA 3.6.5.- GO:0000226 ... P81947 29023132
    26676 5ng1:A (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 29023132
    26677 5ng1:C (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 29023132
    26678 5ngq:A (1.17) BS01 CA ? GO:0030246 ... Q9HYN5 29147502
    26679 5ngq:A (1.17) BS02 CA ? GO:0030246 ... Q9HYN5 29147502
    26680 5ngq:B (1.17) BS01 CA ? GO:0030246 ... Q9HYN5 29147502
    26681 5ngq:B (1.17) BS02 CA ? GO:0030246 ... Q9HYN5 29147502
    26682 5ngq:C (1.17) BS01 CA ? GO:0030246 ... Q9HYN5 29147502
    26683 5ngq:C (1.17) BS02 CA ? GO:0030246 ... Q9HYN5 29147502
    26684 5ngq:D (1.17) BS01 CA ? GO:0030246 ... Q9HYN5 29147502
    26685 5ngq:D (1.17) BS02 CA ? GO:0030246 ... Q9HYN5 29147502
    26686 5ngq:D (1.17) BS03 CA ? GO:0030246 ... Q9HYN5 29147502
    26687 5ngy:A (3.7) BS03 CA 2.4.1.5 GO:0009250 ... A0A2H4A2Q1 N/A
    26688 5ngy:B (3.7) BS01 CA 2.4.1.5 GO:0009250 ... A0A2H4A2Q1 N/A
    26689 5nh5:A (1.8) BS01 CA 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    26690 5nh5:B (1.8) BS01 CA 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    26691 5nh5:C (1.8) BS01 CA 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    26692 5nh5:D (1.8) BS01 CA 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    26693 5nh8:A (1.86) BS01 CA 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    26694 5nh8:A (1.86) BS02 CA 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    26695 5nh8:B (1.86) BS02 CA 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    26696 5nh8:B (1.86) BS03 CA 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    26697 5nh8:C (1.86) BS01 CA 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    26698 5nh8:C (1.86) BS02 CA 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    26699 5nh8:D (1.86) BS01 CA 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    26700 5nh8:D (1.86) BS02 CA 5.3.1.5 GO:0005975 ... Q9P8C9 29045784
    26701 5nin:A (1.7) BS02 CA ? GO:0000086 ... P0DP23 29162807
    26702 5nin:A (1.7) BS03 CA ? GO:0000086 ... P0DP23 29162807
    26703 5nin:B (1.7) BS02 CA ? GO:0000086 ... P0DP23 29162807
    26704 5nin:B (1.7) BS03 CA ? GO:0000086 ... P0DP23 29162807
    26705 5nl7:A (2.48) BS01 CA ? N/A C4LWU6 32848067
    26706 5nmr:A (2.1) BS01 CA ? GO:0001503 ... Q6PHU5 29167428
    26707 5nmr:A (2.1) BS02 CA ? GO:0001503 ... Q6PHU5 29167428
    26708 5nn9:A (2.3) BS01 CA 3.2.1.18 GO:0004308 ... P03472 1920429
    26709 5npf:A (1.38) BS01 CA 3.2.1.45 GO:0004348 ... F6BL85 28776021
    26710 5nrk:B (1.45) BS01 CA ? GO:0000272 ... A0A2R2JFJ6 29367338
    26711 5nrk:B (1.45) BS02 CA ? GO:0000272 ... A0A2R2JFJ6 29367338
    26712 5nrk:B (1.45) BS03 CA ? GO:0000272 ... A0A2R2JFJ6 29367338
    26713 5nrk:D (1.45) BS01 CA ? GO:0000272 ... A0A2R2JFJ6 29367338
    26714 5nrk:D (1.45) BS02 CA ? GO:0000272 ... A0A2R2JFJ6 29367338
    26715 5nrk:D (1.45) BS03 CA ? GO:0000272 ... A0A2R2JFJ6 29367338
    26716 5nrm:B (1.4) BS01 CA ? GO:0000272 ... A0A2R2JFJ7 29367338
    26717 5nrm:B (1.4) BS02 CA ? GO:0000272 ... A0A2R2JFJ7 29367338
    26718 5nrm:B (1.4) BS03 CA ? GO:0000272 ... A0A2R2JFJ7 29367338
    26719 5nsa:A (1.273) BS02 CA ? N/A P20062 28910388
    26720 5nsf:A (2.426) BS02 CA 6.1.1.1 GO:0000166 ... Q57834 30589180
    26721 5nsf:A (2.426) BS03 CA 6.1.1.1 GO:0000166 ... Q57834 30589180
    26722 5nsf:B (2.426) BS02 CA 6.1.1.1 GO:0000166 ... Q57834 30589180
    26723 5nuc:A (2.1) BS01 CA 3.1.31.1 GO:0003676 ... P00644 8762134
    26724 5nur:A (3.29) BS03 CA ? GO:0001530 ... P02931 29038444
    26725 5nur:C (3.29) BS01 CA ? GO:0001530 ... P02931 29038444
    26726 5nur:E (3.29) BS03 CA ? GO:0001530 ... P02931 29038444
    26727 5nwe:A (2.0) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26728 5nwe:A (2.0) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26729 5nwe:B (2.0) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26730 5nwe:B (2.0) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26731 5nwe:C (2.0) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26732 5nwe:C (2.0) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26733 5nwe:D (2.0) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26734 5nwe:D (2.0) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26735 5nxb:A (3.6) BS01 CA 3.2.1.46 GO:0004336 ... P54818 29323104
    26736 5nxb:B (3.6) BS01 CA 3.2.1.46 GO:0004336 ... P54818 29323104
    26737 5nxl:A (1.66) BS01 CA 1.8.3.7 GO:0016491 ... D1A7C3 28544744
    26738 5nxl:A (1.66) BS02 CA 1.8.3.7 GO:0016491 ... D1A7C3 28544744
    26739 5nyy:A (1.28) BS01 CA 1.8.3.7 GO:0016491 ... D1A7C3 28544744
    26740 5nyy:A (1.28) BS02 CA 1.8.3.7 GO:0016491 ... D1A7C3 28544744
    26741 5nz4:A (1.36) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26742 5nz4:A (1.36) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26743 5nz4:B (1.36) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26744 5nz4:B (1.36) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26745 5nze:A (1.69) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26746 5nze:A (1.69) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26747 5nze:B (1.69) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26748 5nze:B (1.69) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26749 5nzf:A (1.75) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26750 5nzf:A (1.75) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26751 5nzf:B (1.75) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26752 5nzf:B (1.75) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26753 5nzf:C (1.75) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26754 5nzf:C (1.75) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26755 5nzf:D (1.75) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26756 5nzf:D (1.75) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26757 5nzn:A (1.73) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26758 5nzn:A (1.73) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26759 5nzn:B (1.73) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26760 5nzn:B (1.73) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26761 5nzn:C (1.73) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26762 5nzn:C (1.73) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26763 5nzn:D (1.73) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26764 5nzn:D (1.73) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    26765 5o0s:A (1.16) BS01 CA 3.2.1.45 GO:0004348 ... F6BL85 28776021
    26766 5o25:B (1.75) BS01 CA ? GO:0000166 ... Q9X1T1 29107484
    26767 5o2y:A (-1.00) BS01 CA N/A GO:0015627 ... N/A 28993624
    26768 5o2z:A (1.7) BS01 CA ? GO:0051015 ... P06396 29069428
    26769 5o2z:B (1.7) BS01 CA ? GO:0051015 ... P06396 29069428
    26770 5o32:A (4.20621) BS01 CA ? GO:0004866 ... P01024 28671664
    26771 5o32:D (4.20621) BS01 CA 3.4.21.45 GO:0016020 ... P05156 28671664
    26772 5o32:D (4.20621) BS02 CA 3.4.21.45 GO:0016020 ... P05156 28671664
    26773 5o32:E (4.20621) BS01 CA ? GO:0004866 ... P01024 28671664
    26774 5o32:H (4.20621) BS01 CA 3.4.21.45 GO:0016020 ... P05156 28671664
    26775 5o32:H (4.20621) BS02 CA 3.4.21.45 GO:0016020 ... P05156 28671664
    26776 5o5r:A (1.65) BS05 CA 3.4.17.21 GO:0004180 ... Q04609 N/A
    26777 5o5t:A (1.43) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 N/A
    26778 5o5u:A (1.53) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 N/A
    26779 5o6n:A (1.35) BS01 CA ? GO:0030246 ... P02866 29199979
    26780 5o76:A (2.473) BS04 CA 2.3.2.27 GO:0001784 ... P22681 29053960
    26781 5o76:C (2.473) BS04 CA 2.3.2.27 GO:0001784 ... P22681 29053960
    26782 5o7e:A (1.87) BS02 CA 3.4.24.3 GO:0004222 ... Q46085 28820255
    26783 5o8l:A (3.6) BS03 CA 2.4.1.5 GO:0009250 ... A0A2H4A2Q1 N/A
    26784 5o8n:A (1.9) BS01 CA 3.4.24.27 GO:0004222 ... P00800 29124258
    26785 5o8n:A (1.9) BS02 CA 3.4.24.27 GO:0004222 ... P00800 29124258
    26786 5o8n:A (1.9) BS04 CA 3.4.24.27 GO:0004222 ... P00800 29124258
    26787 5o8n:A (1.9) BS05 CA 3.4.24.27 GO:0004222 ... P00800 29124258
    26788 5o8x:A (2.5) BS01 CA ? GO:0005515 ... Q9HX24 29131935
    26789 5o8x:B (2.5) BS01 CA ? GO:0005515 ... Q9HX24 29131935
    26790 5oc9:A (3.2) BS01 CA ? GO:0005227 ... Q9NW15 31477691
    26791 5oc9:A (3.2) BS02 CA ? GO:0005227 ... Q9NW15 31477691
    26792 5oc9:A (3.2) BS03 CA ? GO:0005227 ... Q9NW15 31477691
    26793 5oc9:B (3.2) BS01 CA ? GO:0005227 ... Q9NW15 31477691
    26794 5oc9:B (3.2) BS02 CA ? GO:0005227 ... Q9NW15 31477691
    26795 5oc9:B (3.2) BS03 CA ? GO:0005227 ... Q9NW15 31477691
    26796 5odc:F (2.3) BS01 CA 1.12.1.2
    1.12.99.6    		 GO:0008901 ... A0A2D0TCA6 28818947
    26797 5odc:L (2.3) BS01 CA 1.12.1.2
    1.12.99.6    		 GO:0008901 ... A0A2D0TCA6 28818947
    26798 5odu:A (1.56) BS02 CA ? GO:0030246 ... Q7N561 28972138
    26799 5odu:B (1.56) BS02 CA ? GO:0030246 ... Q7N561 28972138
    26800 5odu:C (1.56) BS02 CA ? GO:0030246 ... Q7N561 28972138
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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