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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    25801 5lpu:D (2.1) BS02 CA ? GO:0001837 ... P26447 28669632
    25802 5lpx:A (1.9) BS01 CA ? GO:0001525 ... P07355 28669632
    25803 5lpx:A (1.9) BS02 CA ? GO:0001525 ... P07355 28669632
    25804 5lpx:A (1.9) BS03 CA ? GO:0001525 ... P07355 28669632
    25805 5lpx:A (1.9) BS04 CA ? GO:0001525 ... P07355 28669632
    25806 5lpx:A (1.9) BS05 CA ? GO:0001525 ... P07355 28669632
    25807 5lq0:A (2.9) BS01 CA ? GO:0001525 ... P07355 28669632
    25808 5lq0:A (2.9) BS02 CA ? GO:0001525 ... P07355 28669632
    25809 5lq0:A (2.9) BS03 CA ? GO:0001525 ... P07355 28669632
    25810 5lq0:B (2.9) BS01 CA ? GO:0001525 ... P07355 28669632
    25811 5lq0:B (2.9) BS02 CA ? GO:0001525 ... P07355 28669632
    25812 5lq0:B (2.9) BS03 CA ? GO:0001525 ... P07355 28669632
    25813 5lq2:A (3.4) BS01 CA ? GO:0001525 ... P07355 28669632
    25814 5lq2:A (3.4) BS02 CA ? GO:0001525 ... P07355 28669632
    25815 5lq2:A (3.4) BS03 CA ? GO:0001525 ... P07355 28669632
    25816 5lq2:A (3.4) BS04 CA ? GO:0001525 ... P07355 28669632
    25817 5lq2:A (3.4) BS05 CA ? GO:0001525 ... P07355 28669632
    25818 5lq2:B (3.4) BS01 CA ? GO:0001525 ... P07355 28669632
    25819 5lq2:B (3.4) BS02 CA ? GO:0001525 ... P07355 28669632
    25820 5lq2:B (3.4) BS03 CA ? GO:0001525 ... P07355 28669632
    25821 5lq2:B (3.4) BS04 CA ? GO:0001525 ... P07355 28669632
    25822 5lqq:A (2.4) BS04 CA 3.1.4.39 GO:0001953 ... Q64610 27982588
    25823 5ls4:A (1.469) BS01 CA 3.1.13.- N/A Q5S581 28777079
    25824 5lu3:A (1.5) BS02 CA ? N/A G0GE26 28179427
    25825 5luh:A (1.73) BS01 CA 2.7.7.47 GO:0005524 ... Q8ZPX9 29871922
    25826 5luh:A (1.73) BS02 CA 2.7.7.47 GO:0005524 ... Q8ZPX9 29871922
    25827 5luh:B (1.73) BS01 CA 2.7.7.47 GO:0005524 ... Q8ZPX9 29871922
    25828 5luh:B (1.73) BS04 CA 2.7.7.47 GO:0005524 ... Q8ZPX9 29871922
    25829 5lul:A (1.9) BS01 CA 3.1.1.101
    3.1.1.74    		 GO:0005576 ... E9LVH9 28671263
    25830 5lvd:E (1.25) BS02 CA 3.4.24.27 GO:0004222 ... P00800 28696673
    25831 5lvd:E (1.25) BS03 CA 3.4.24.27 GO:0004222 ... P00800 28696673
    25832 5lvd:E (1.25) BS04 CA 3.4.24.27 GO:0004222 ... P00800 28696673
    25833 5lvd:E (1.25) BS05 CA 3.4.24.27 GO:0004222 ... P00800 28696673
    25834 5lw3:A (1.19) BS01 CA 5.1.3.37 N/A Q9ZFH0 N/A
    25835 5lwd:E (1.23) BS02 CA 3.4.24.27 GO:0004222 ... P00800 27959500
    25836 5lwd:E (1.23) BS03 CA 3.4.24.27 GO:0004222 ... P00800 27959500
    25837 5lwd:E (1.23) BS04 CA 3.4.24.27 GO:0004222 ... P00800 27959500
    25838 5lwd:E (1.23) BS05 CA 3.4.24.27 GO:0004222 ... P00800 27959500
    25839 5lxs:A (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 28207984
    25840 5lxs:C (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 28207984
    25841 5lxt:A (1.9) BS02 CA 3.6.5.- GO:0000226 ... P81947 28207984
    25842 5lxt:C (1.9) BS02 CA 3.6.5.- GO:0000226 ... P81947 28207984
    25843 5lxv:B (2.4) BS01 CA ? GO:0000272 ... A0A1L1QK37 27875311
    25844 5lxv:B (2.4) BS02 CA ? GO:0000272 ... A0A1L1QK37 27875311
    25845 5lxv:D (2.4) BS01 CA ? GO:0000272 ... A0A1L1QK37 27875311
    25846 5lxv:D (2.4) BS02 CA ? GO:0000272 ... A0A1L1QK37 27875311
    25847 5lyj:A (2.397) BS02 CA 3.6.5.- GO:0000226 ... P81947 N/A
    25848 5lyj:C (2.397) BS02 CA 3.6.5.- GO:0000226 ... P81947 N/A
    25849 5m06:B (2.0) BS02 CA 2.7.11.1 GO:0004672 ... P9WI69 28054744
    25850 5m0d:A (2.4) BS05 CA 3.1.4.39 GO:0001953 ... Q64610 28165241
    25851 5m0e:A (1.95) BS03 CA 3.1.4.39 GO:0001953 ... Q64610 28165241
    25852 5m0m:A (2.1) BS05 CA 3.1.4.39 GO:0001953 ... Q64610 28165241
    25853 5m0s:A (2.1) BS03 CA 3.1.4.39 GO:0001953 ... Q64610 28165241
    25854 5m0y:B (1.5) BS01 CA ? GO:0000272 ... A3DGE8 27924829
    25855 5m0y:B (1.5) BS02 CA ? GO:0000272 ... A3DGE8 27924829
    25856 5m11:A (2.9) BS01 CA ? GO:0046872 ... Q9S3Q8 27883039
    25857 5m11:A (2.9) BS06 CA ? GO:0046872 ... Q9S3Q8 27883039
    25858 5m11:A (2.9) BS07 CA ? GO:0046872 ... Q9S3Q8 27883039
    25859 5m1p:A (1.1) BS01 CA 3.1.21.-
    3.6.4.-    		 N/A A0A1L4BKS3 28100693
    25860 5m27:A (2.0) BS02 CA N/A GO:0009190 ... N/A 28336405
    25861 5m27:B (2.0) BS02 CA N/A GO:0009190 ... N/A 28336405
    25862 5m2o:B (1.26) BS01 CA N/A GO:0000272 ... N/A 28389644
    25863 5m2o:B (1.26) BS02 CA N/A GO:0000272 ... N/A 28389644
    25864 5m2s:B (1.7) BS01 CA N/A GO:0000272 ... N/A 28389644
    25865 5m2s:B (1.7) BS02 CA N/A GO:0000272 ... N/A 28389644
    25866 5m3c:A (2.8) BS01 CA ? N/A Q9I5W1 30106221
    25867 5m3c:A (2.8) BS02 CA ? N/A Q9I5W1 30106221
    25868 5m3c:A (2.8) BS03 CA ? N/A Q9I5W1 30106221
    25869 5m3c:B (2.8) BS01 CA ? N/A Q9I5W1 30106221
    25870 5m3c:B (2.8) BS02 CA ? N/A Q9I5W1 30106221
    25871 5m5f:E (1.33) BS02 CA 3.4.24.27 GO:0004222 ... P00800 28696673
    25872 5m5f:E (1.33) BS03 CA 3.4.24.27 GO:0004222 ... P00800 28696673
    25873 5m5f:E (1.33) BS04 CA 3.4.24.27 GO:0004222 ... P00800 28696673
    25874 5m5f:E (1.33) BS05 CA 3.4.24.27 GO:0004222 ... P00800 28696673
    25875 5m62:A (1.7) BS01 CA ? N/A Q8VBX4 27903635
    25876 5m62:B (1.7) BS01 CA ? N/A Q8VBX4 27903635
    25877 5m69:E (1.44) BS02 CA 3.4.24.27 GO:0004222 ... P00800 28696673
    25878 5m69:E (1.44) BS03 CA 3.4.24.27 GO:0004222 ... P00800 28696673
    25879 5m69:E (1.44) BS04 CA 3.4.24.27 GO:0004222 ... P00800 28696673
    25880 5m69:E (1.44) BS05 CA 3.4.24.27 GO:0004222 ... P00800 28696673
    25881 5m6c:A (3.0) BS01 CA ? GO:0003779 ... P84074 28398555
    25882 5m6c:A (3.0) BS02 CA ? GO:0003779 ... P84074 28398555
    25883 5m6c:A (3.0) BS03 CA ? GO:0003779 ... P84074 28398555
    25884 5m6c:E (3.0) BS01 CA ? GO:0003779 ... P84074 28398555
    25885 5m6c:E (3.0) BS02 CA ? GO:0003779 ... P84074 28398555
    25886 5m6c:E (3.0) BS03 CA ? GO:0003779 ... P84074 28398555
    25887 5m6d:A (2.0) BS01 CA 1.2.1.- GO:0000166 ... I6L8L9 28011643
    25888 5m7e:A (2.046) BS02 CA 3.6.5.- GO:0000226 ... P81947 28276440
    25889 5m7e:C (2.046) BS02 CA 3.6.5.- GO:0000226 ... P81947 28276440
    25890 5m7g:A (2.248) BS02 CA 3.6.5.- GO:0000226 ... P81947 28276440
    25891 5m7g:C (2.248) BS02 CA 3.6.5.- GO:0000226 ... P81947 28276440
    25892 5m86:A (2.4) BS01 CA ? GO:0046872 ... Q9HIW9 28580920
    25893 5m86:B (2.4) BS01 CA ? GO:0046872 ... Q9HIW9 28580920
    25894 5m86:C (2.4) BS01 CA ? GO:0046872 ... Q9HIW9 28580920
    25895 5m86:D (2.4) BS01 CA ? GO:0046872 ... Q9HIW9 28580920
    25896 5m86:E (2.4) BS01 CA ? GO:0046872 ... Q9HIW9 28580920
    25897 5m86:F (2.4) BS01 CA ? GO:0046872 ... Q9HIW9 28580920
    25898 5m86:G (2.4) BS01 CA ? GO:0046872 ... Q9HIW9 28580920
    25899 5m86:H (2.4) BS01 CA ? GO:0046872 ... Q9HIW9 28580920
    25900 5m86:I (2.4) BS01 CA ? GO:0046872 ... Q9HIW9 28580920
    25901 5m86:J (2.4) BS01 CA ? GO:0046872 ... Q9HIW9 28580920
    25902 5m8d:A (2.25) BS02 CA 3.6.5.- GO:0000226 ... P81947 28276440
    25903 5m8d:C (2.25) BS02 CA 3.6.5.- GO:0000226 ... P81947 28276440
    25904 5m8e:A (2.0) BS01 CA 3.2.1.55 GO:0004553 ... A0A0D1M7L2 28485897
    25905 5m8e:B (2.0) BS01 CA 3.2.1.55 GO:0004553 ... A0A0D1M7L2 28485897
    25906 5m8g:A (2.147) BS02 CA 3.6.5.- GO:0000226 ... P81947 28276440
    25907 5m8g:C (2.147) BS02 CA 3.6.5.- GO:0000226 ... P81947 28276440
    25908 5m99:A (1.96) BS01 CA 3.2.1.1 GO:0004556 ... A0A059TXD8 28648523
    25909 5m99:B (1.96) BS01 CA 3.2.1.1 GO:0004556 ... A0A059TXD8 28648523
    25910 5m9w:A (1.21) BS02 CA 3.4.24.27 GO:0004222 ... P00800 28696673
    25911 5m9w:A (1.21) BS03 CA 3.4.24.27 GO:0004222 ... P00800 28696673
    25912 5m9w:A (1.21) BS04 CA 3.4.24.27 GO:0004222 ... P00800 28696673
    25913 5m9w:A (1.21) BS05 CA 3.4.24.27 GO:0004222 ... P00800 28696673
    25914 5ma7:E (1.3) BS02 CA 3.4.24.27 GO:0004222 ... P00800 28696673
    25915 5ma7:E (1.3) BS03 CA 3.4.24.27 GO:0004222 ... P00800 28696673
    25916 5ma7:E (1.3) BS04 CA 3.4.24.27 GO:0004222 ... P00800 28696673
    25917 5ma7:E (1.3) BS05 CA 3.4.24.27 GO:0004222 ... P00800 28696673
    25918 5may:A (1.65) BS01 CA ? GO:0030246 ... A0A0H2ZE85 29272578
    25919 5may:A (1.65) BS02 CA ? GO:0030246 ... A0A0H2ZE85 29272578
    25920 5may:B (1.65) BS01 CA ? GO:0030246 ... A0A0H2ZE85 29272578
    25921 5may:B (1.65) BS02 CA ? GO:0030246 ... A0A0H2ZE85 29272578
    25922 5may:C (1.65) BS01 CA ? GO:0030246 ... A0A0H2ZE85 29272578
    25923 5may:C (1.65) BS02 CA ? GO:0030246 ... A0A0H2ZE85 29272578
    25924 5may:D (1.65) BS01 CA ? GO:0030246 ... A0A0H2ZE85 29272578
    25925 5may:D (1.65) BS02 CA ? GO:0030246 ... A0A0H2ZE85 29272578
    25926 5maz:A (1.45) BS01 CA ? GO:0030246 ... A0A0H2ZE85 N/A
    25927 5maz:A (1.45) BS02 CA ? GO:0030246 ... A0A0H2ZE85 N/A
    25928 5maz:B (1.45) BS03 CA ? GO:0030246 ... A0A0H2ZE85 N/A
    25929 5maz:B (1.45) BS04 CA ? GO:0030246 ... A0A0H2ZE85 N/A
    25930 5maz:C (1.45) BS01 CA ? GO:0030246 ... A0A0H2ZE85 N/A
    25931 5maz:C (1.45) BS02 CA ? GO:0030246 ... A0A0H2ZE85 N/A
    25932 5maz:D (1.45) BS03 CA ? GO:0030246 ... A0A0H2ZE85 N/A
    25933 5maz:D (1.45) BS04 CA ? GO:0030246 ... A0A0H2ZE85 N/A
    25934 5mb1:A (1.65) BS01 CA ? GO:0030246 ... A0A0H2ZE85 29272578
    25935 5mb1:A (1.65) BS02 CA ? GO:0030246 ... A0A0H2ZE85 29272578
    25936 5mb1:B (1.65) BS01 CA ? GO:0030246 ... A0A0H2ZE85 29272578
    25937 5mb1:B (1.65) BS02 CA ? GO:0030246 ... A0A0H2ZE85 29272578
    25938 5mb1:C (1.65) BS01 CA ? GO:0030246 ... A0A0H2ZE85 29272578
    25939 5mb1:D (1.65) BS01 CA ? GO:0030246 ... A0A0H2ZE85 29272578
    25940 5mb1:D (1.65) BS02 CA ? GO:0030246 ... A0A0H2ZE85 29272578
    25941 5mc9:A (2.13) BS01 CA ? GO:0007155 ... P19137 28132784
    25942 5mc9:A (2.13) BS02 CA ? GO:0007155 ... P19137 28132784
    25943 5mer:A (1.88) BS02 CA ? N/A P04439 27903649
    25944 5mer:D (1.88) BS02 CA ? N/A P04439 27903649
    25945 5mf4:A (2.3) BS02 CA 3.6.5.- GO:0000226 ... P81947 30023505
    25946 5mf4:C (2.3) BS02 CA 3.6.5.- GO:0000226 ... P81947 30023505
    25947 5mf4:F (2.3) BS01 CA N/A GO:0036211 ... N/A 30023505
    25948 5mfa:A (1.2) BS03 CA 1.11.2.2 GO:0001878 ... P05164 28348079
    25949 5mfd:A (2.3) BS01 CA N/A N/A N/A 28691351
    25950 5mfd:A (2.3) BS02 CA N/A N/A N/A 28691351
    25951 5mfd:A (2.3) BS03 CA N/A N/A N/A 28691351
    25952 5mfd:A (2.3) BS04 CA N/A N/A N/A 28691351
    25953 5mfd:A (2.3) BS05 CA N/A N/A N/A 28691351
    25954 5mfd:A (2.3) BS06 CA N/A N/A N/A 28691351
    25955 5mfd:A (2.3) BS07 CA N/A N/A N/A 28691351
    25956 5mfd:C (2.3) BS01 CA N/A N/A N/A 28691351
    25957 5mfd:C (2.3) BS02 CA N/A N/A N/A 28691351
    25958 5mfd:C (2.3) BS03 CA N/A N/A N/A 28691351
    25959 5mfd:C (2.3) BS04 CA N/A N/A N/A 28691351
    25960 5mfd:C (2.3) BS05 CA N/A N/A N/A 28691351
    25961 5mfd:C (2.3) BS06 CA N/A N/A N/A 28691351
    25962 5mfd:E (2.3) BS01 CA N/A N/A N/A 28691351
    25963 5mfd:E (2.3) BS02 CA N/A N/A N/A 28691351
    25964 5mfd:E (2.3) BS03 CA N/A N/A N/A 28691351
    25965 5mfd:E (2.3) BS04 CA N/A N/A N/A 28691351
    25966 5mfd:E (2.3) BS05 CA N/A N/A N/A 28691351
    25967 5mfd:E (2.3) BS06 CA N/A N/A N/A 28691351
    25968 5mfd:E (2.3) BS07 CA N/A N/A N/A 28691351
    25969 5mfd:E (2.3) BS08 CA N/A N/A N/A 28691351
    25970 5mfd:F (2.3) BS01 CA ? N/A P03712 28691351
    25971 5mfd:G (2.3) BS01 CA N/A N/A N/A 28691351
    25972 5mfd:G (2.3) BS02 CA N/A N/A N/A 28691351
    25973 5mfd:G (2.3) BS03 CA N/A N/A N/A 28691351
    25974 5mfd:G (2.3) BS04 CA N/A N/A N/A 28691351
    25975 5mfd:G (2.3) BS05 CA N/A N/A N/A 28691351
    25976 5mfd:G (2.3) BS06 CA N/A N/A N/A 28691351
    25977 5mfd:G (2.3) BS07 CA N/A N/A N/A 28691351
    25978 5mfd:I (2.3) BS01 CA N/A N/A N/A 28691351
    25979 5mfd:I (2.3) BS02 CA N/A N/A N/A 28691351
    25980 5mfd:I (2.3) BS03 CA N/A N/A N/A 28691351
    25981 5mfd:I (2.3) BS04 CA N/A N/A N/A 28691351
    25982 5mfd:I (2.3) BS05 CA N/A N/A N/A 28691351
    25983 5mfd:I (2.3) BS06 CA N/A N/A N/A 28691351
    25984 5mfd:I (2.3) BS07 CA N/A N/A N/A 28691351
    25985 5mfd:I (2.3) BS08 CA N/A N/A N/A 28691351
    25986 5mfd:J (2.3) BS01 CA N/A N/A N/A 28691351
    25987 5mfd:J (2.3) BS02 CA N/A N/A N/A 28691351
    25988 5mfd:J (2.3) BS03 CA N/A N/A N/A 28691351
    25989 5mfd:J (2.3) BS04 CA N/A N/A N/A 28691351
    25990 5mfd:J (2.3) BS05 CA N/A N/A N/A 28691351
    25991 5mfd:J (2.3) BS06 CA N/A N/A N/A 28691351
    25992 5mfd:J (2.3) BS07 CA N/A N/A N/A 28691351
    25993 5mfd:J (2.3) BS08 CA N/A N/A N/A 28691351
    25994 5mfd:K (2.3) BS01 CA N/A N/A N/A 28691351
    25995 5mfd:K (2.3) BS02 CA N/A N/A N/A 28691351
    25996 5mfd:K (2.3) BS03 CA N/A N/A N/A 28691351
    25997 5mfd:K (2.3) BS04 CA N/A N/A N/A 28691351
    25998 5mfd:K (2.3) BS05 CA N/A N/A N/A 28691351
    25999 5mfd:K (2.3) BS06 CA N/A N/A N/A 28691351
    26000 5mfd:K (2.3) BS07 CA N/A N/A N/A 28691351
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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