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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    25401 5kj7:E (3.5) BS04 CA ? GO:0016020 ... P21707 27731796
    25402 5kj7:F (3.5) BS01 CA ? GO:0016020 ... P21707 27731796
    25403 5kj7:F (3.5) BS02 CA ? GO:0016020 ... P21707 27731796
    25404 5kj7:F (3.5) BS03 CA ? GO:0016020 ... P21707 27731796
    25405 5kj7:K (3.5) BS01 CA ? GO:0016020 ... P21707 27731796
    25406 5kj7:K (3.5) BS02 CA ? GO:0016020 ... P21707 27731796
    25407 5kj7:K (3.5) BS03 CA ? GO:0016020 ... P21707 27731796
    25408 5kj7:K (3.5) BS04 CA ? GO:0016020 ... P21707 27731796
    25409 5kj8:E (4.1) BS01 CA ? GO:0016020 ... P21707 27731796
    25410 5kj8:E (4.1) BS02 CA ? GO:0016020 ... P21707 27731796
    25411 5kj8:E (4.1) BS03 CA ? GO:0016020 ... P21707 27731796
    25412 5kj8:E (4.1) BS04 CA ? GO:0016020 ... P21707 27731796
    25413 5kj8:F (4.1) BS01 CA ? GO:0016020 ... P21707 27731796
    25414 5kj8:F (4.1) BS02 CA ? GO:0016020 ... P21707 27731796
    25415 5kj8:F (4.1) BS03 CA ? GO:0016020 ... P21707 27731796
    25416 5kj8:F (4.1) BS04 CA ? GO:0016020 ... P21707 27731796
    25417 5kj8:K (4.1) BS01 CA ? GO:0016020 ... P21707 27731796
    25418 5kj8:K (4.1) BS02 CA ? GO:0016020 ... P21707 27731796
    25419 5kj8:K (4.1) BS03 CA ? GO:0016020 ... P21707 27731796
    25420 5kj8:K (4.1) BS04 CA ? GO:0016020 ... P21707 27731796
    25421 5kl4:A (1.783) BS06 CA ? N/A P19544 27596598
    25422 5kl4:D (1.783) BS06 CA ? N/A P19544 27596598
    25423 5klb:A (2.7) BS01 CA ? GO:0001518 ... A8EVM5 27556947
    25424 5klb:B (2.7) BS01 CA ? GO:0001518 ... A8EVM5 27556947
    25425 5klb:C (2.7) BS01 CA ? GO:0001518 ... A8EVM5 27556947
    25426 5klb:D (2.7) BS01 CA ? GO:0001518 ... A8EVM5 27556947
    25427 5klg:D (3.3) BS01 CA ? GO:0001518 ... A8EVM5 27556947
    25428 5kmh:A (3.2) BS01 CA ? GO:0001518 ... A8EVM5 27556947
    25429 5kn0:A (2.729) BS01 CA ? GO:0005509 ... Q05JF3 27649144
    25430 5kn0:A (2.729) BS02 CA ? GO:0005509 ... Q05JF3 27649144
    25431 5kn0:A (2.729) BS03 CA ? GO:0005509 ... Q05JF3 27649144
    25432 5kn0:A (2.729) BS04 CA ? GO:0005509 ... Q05JF3 27649144
    25433 5kn0:B (2.729) BS01 CA ? GO:0005509 ... Q05JF3 27649144
    25434 5kn0:B (2.729) BS02 CA ? GO:0005509 ... Q05JF3 27649144
    25435 5kn0:B (2.729) BS03 CA ? GO:0005509 ... Q05JF3 27649144
    25436 5kn0:C (2.729) BS01 CA ? GO:0005509 ... Q05JF3 27649144
    25437 5kn0:C (2.729) BS02 CA ? GO:0005509 ... Q05JF3 27649144
    25438 5kn0:C (2.729) BS03 CA ? GO:0005509 ... Q05JF3 27649144
    25439 5kn0:D (2.729) BS01 CA ? GO:0005509 ... Q05JF3 27649144
    25440 5kn0:D (2.729) BS02 CA ? GO:0005509 ... Q05JF3 27649144
    25441 5kn0:D (2.729) BS03 CA ? GO:0005509 ... Q05JF3 27649144
    25442 5kn0:D (2.729) BS04 CA ? GO:0005509 ... Q05JF3 27649144
    25443 5kn1:A (2.137) BS01 CA ? GO:0005509 ... Q05JF3 27649144
    25444 5kn1:A (2.137) BS02 CA ? GO:0005509 ... Q05JF3 27649144
    25445 5kn1:A (2.137) BS03 CA ? GO:0005509 ... Q05JF3 27649144
    25446 5kn1:A (2.137) BS04 CA ? GO:0005509 ... Q05JF3 27649144
    25447 5kn1:A (2.137) BS05 CA ? GO:0005509 ... Q05JF3 27649144
    25448 5kn1:B (2.137) BS01 CA ? GO:0005509 ... Q05JF3 27649144
    25449 5kn1:B (2.137) BS02 CA ? GO:0005509 ... Q05JF3 27649144
    25450 5kn1:B (2.137) BS03 CA ? GO:0005509 ... Q05JF3 27649144
    25451 5kn1:B (2.137) BS04 CA ? GO:0005509 ... Q05JF3 27649144
    25452 5kn1:B (2.137) BS05 CA ? GO:0005509 ... Q05JF3 27649144
    25453 5kn1:B (2.137) BS06 CA ? GO:0005509 ... Q05JF3 27649144
    25454 5kn1:B (2.137) BS07 CA ? GO:0005509 ... Q05JF3 27649144
    25455 5kn1:B (2.137) BS08 CA ? GO:0005509 ... Q05JF3 27649144
    25456 5kn1:B (2.137) BS09 CA ? GO:0005509 ... Q05JF3 27649144
    25457 5kn1:B (2.137) BS10 CA ? GO:0005509 ... Q05JF3 27649144
    25458 5kn1:C (2.137) BS01 CA ? GO:0005509 ... Q05JF3 27649144
    25459 5kn1:C (2.137) BS02 CA ? GO:0005509 ... Q05JF3 27649144
    25460 5kn1:C (2.137) BS03 CA ? GO:0005509 ... Q05JF3 27649144
    25461 5kn1:C (2.137) BS04 CA ? GO:0005509 ... Q05JF3 27649144
    25462 5kn1:C (2.137) BS05 CA ? GO:0005509 ... Q05JF3 27649144
    25463 5kn1:C (2.137) BS06 CA ? GO:0005509 ... Q05JF3 27649144
    25464 5kn1:C (2.137) BS07 CA ? GO:0005509 ... Q05JF3 27649144
    25465 5kn1:C (2.137) BS08 CA ? GO:0005509 ... Q05JF3 27649144
    25466 5kn1:C (2.137) BS09 CA ? GO:0005509 ... Q05JF3 27649144
    25467 5kn2:A (2.601) BS01 CA ? GO:0005509 ... Q05JF3 27649144
    25468 5kn2:A (2.601) BS02 CA ? GO:0005509 ... Q05JF3 27649144
    25469 5kn2:A (2.601) BS03 CA ? GO:0005509 ... Q05JF3 27649144
    25470 5kn2:A (2.601) BS04 CA ? GO:0005509 ... Q05JF3 27649144
    25471 5kn2:A (2.601) BS05 CA ? GO:0005509 ... Q05JF3 27649144
    25472 5kn2:B (2.601) BS01 CA ? GO:0005509 ... Q05JF3 27649144
    25473 5kn2:B (2.601) BS02 CA ? GO:0005509 ... Q05JF3 27649144
    25474 5kn2:B (2.601) BS03 CA ? GO:0005509 ... Q05JF3 27649144
    25475 5kn2:B (2.601) BS04 CA ? GO:0005509 ... Q05JF3 27649144
    25476 5kn2:B (2.601) BS05 CA ? GO:0005509 ... Q05JF3 27649144
    25477 5kn2:B (2.601) BS06 CA ? GO:0005509 ... Q05JF3 27649144
    25478 5kn2:B (2.601) BS07 CA ? GO:0005509 ... Q05JF3 27649144
    25479 5kn2:B (2.601) BS08 CA ? GO:0005509 ... Q05JF3 27649144
    25480 5kn2:C (2.601) BS01 CA ? GO:0005509 ... Q05JF3 27649144
    25481 5kn2:C (2.601) BS02 CA ? GO:0005509 ... Q05JF3 27649144
    25482 5kn2:C (2.601) BS03 CA ? GO:0005509 ... Q05JF3 27649144
    25483 5kn2:C (2.601) BS04 CA ? GO:0005509 ... Q05JF3 27649144
    25484 5kn2:C (2.601) BS05 CA ? GO:0005509 ... Q05JF3 27649144
    25485 5kn2:C (2.601) BS06 CA ? GO:0005509 ... Q05JF3 27649144
    25486 5kn2:C (2.601) BS07 CA ? GO:0005509 ... Q05JF3 27649144
    25487 5kn2:C (2.601) BS08 CA ? GO:0005509 ... Q05JF3 27649144
    25488 5kn2:C (2.601) BS09 CA ? GO:0005509 ... Q05JF3 27649144
    25489 5kn2:C (2.601) BS10 CA ? GO:0005509 ... Q05JF3 27649144
    25490 5kn3:A (1.849) BS01 CA ? GO:0005509 ... Q05JF3 27649144
    25491 5kn3:A (1.849) BS02 CA ? GO:0005509 ... Q05JF3 27649144
    25492 5kn3:A (1.849) BS03 CA ? GO:0005509 ... Q05JF3 27649144
    25493 5kn8:A (1.81) BS04 CA 3.2.2.31 GO:0003677 ... P83847 28130451
    25494 5kn9:A (1.93) BS04 CA 3.2.2.31 GO:0003677 ... P83847 28130451
    25495 5kr5:A (2.1) BS02 CA N/A GO:0008483 ... N/A N/A
    25496 5kr5:A (2.1) BS03 CA N/A GO:0008483 ... N/A N/A
    25497 5kr5:B (2.1) BS03 CA N/A GO:0008483 ... N/A N/A
    25498 5kru:A (1.6) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    25499 5ks9:C (2.55) BS02 CA ? GO:0006955 ... L8E864 27568928
    25500 5ks9:E (2.55) BS02 CA ? GO:0002250 ... A0A0B4J274
    P01848    		 27568928
    25501 5ks9:G (2.55) BS02 CA ? GO:0002250 ... A0A0B4J274
    P01848    		 27568928
    25502 5kth:A (2.21) BS03 CA ? N/A E1BHM0 27542410
    25503 5kth:A (2.21) BS04 CA ? N/A E1BHM0 27542410
    25504 5kth:A (2.21) BS05 CA ? N/A E1BHM0 27542410
    25505 5kti:A (1.8) BS03 CA ? N/A E1BHM0 27542410
    25506 5kti:A (1.8) BS04 CA ? N/A E1BHM0 27542410
    25507 5kti:A (1.8) BS05 CA ? N/A E1BHM0 27542410
    25508 5kty:A (2.522) BS03 CA 3.6.5.- GO:0003924 ... Q8IXI2 27605430
    25509 5kty:A (2.522) BS04 CA 3.6.5.- GO:0003924 ... Q8IXI2 27605430
    25510 5kv8:A (1.949) BS01 CA 3.2.1.18 GO:0004308 ... G8G134 28674426
    25511 5kv8:B (1.949) BS01 CA 3.2.1.18 GO:0004308 ... G8G134 28674426
    25512 5kv9:B (2.0) BS01 CA 3.2.1.18 GO:0004308 ... G8G134 28674426
    25513 5kva:A (1.827) BS02 CA 2.1.1.104 GO:0008168 ... C5Z4W3 27457122
    25514 5kva:B (1.827) BS02 CA 2.1.1.104 GO:0008168 ... C5Z4W3 27457122
    25515 5kws:A (1.316) BS02 CA ? GO:0030246 ... Q8D072 N/A
    25516 5kx5:A (2.5) BS03 CA ? GO:0000226 ... D0VWZ0 27882198
    25517 5kx5:C (2.5) BS04 CA ? GO:0000226 ... D0VWZ0 27882198
    25518 5kxa:A (2.59) BS03 CA 3.1.4.39 GO:0003676 ... Q13822 27754931
    25519 5kxb:A (2.33) BS01 CA ? GO:0030246 ... A0A1D5B395 27601469
    25520 5kxb:B (2.33) BS01 CA ? GO:0030246 ... A0A1D5B395 27601469
    25521 5kxb:C (2.33) BS01 CA ? GO:0030246 ... A0A1D5B395 27601469
    25522 5kxb:D (2.33) BS01 CA ? GO:0030246 ... A0A1D5B395 27601469
    25523 5kxc:A (1.8) BS02 CA ? GO:0030246 ... A0A1D5B395 27601469
    25524 5kxc:B (1.8) BS02 CA ? GO:0030246 ... A0A1D5B395 27601469
    25525 5kxc:C (1.8) BS02 CA ? GO:0030246 ... A0A1D5B395 27601469
    25526 5kxc:D (1.8) BS02 CA ? GO:0030246 ... A0A1D5B395 27601469
    25527 5kxd:A (1.95) BS01 CA ? GO:0030246 ... A0A1D5B396 27601469
    25528 5kxd:B (1.95) BS01 CA ? GO:0030246 ... A0A1D5B396 27601469
    25529 5kxd:C (1.95) BS01 CA ? GO:0030246 ... A0A1D5B396 27601469
    25530 5kxd:D (1.95) BS01 CA ? GO:0030246 ... A0A1D5B396 27601469
    25531 5kxe:A (2.09) BS03 CA ? GO:0030246 ... A0A1D5B395 27601469
    25532 5kxe:B (2.09) BS03 CA ? GO:0030246 ... A0A1D5B395 27601469
    25533 5kxe:C (2.09) BS03 CA ? GO:0030246 ... A0A1D5B395 27601469
    25534 5kxe:D (2.09) BS03 CA ? GO:0030246 ... A0A1D5B395 27601469
    25535 5kxu:A (1.2) BS01 CA 3.4.21.64 GO:0004252 ... P06873 28361898
    25536 5kxu:A (1.2) BS02 CA 3.4.21.64 GO:0004252 ... P06873 28361898
    25537 5kxv:A (0.98) BS01 CA 3.4.21.64 GO:0004252 ... P06873 28361898
    25538 5kxv:A (0.98) BS02 CA 3.4.21.64 GO:0004252 ... P06873 28361898
    25539 5kyi:A (1.7) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    25540 5kyl:A (1.85) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    25541 5kzm:B (2.804) BS01 CA 4.2.1.20 GO:0000162 ... Q5NE79 31316809
    25542 5kzp:F (2.262) BS02 CA N/A N/A N/A 28794021
    25543 5kzp:F (2.262) BS03 CA N/A N/A N/A 28794021
    25544 5kzp:H (2.262) BS02 CA N/A N/A N/A 28794021
    25545 5kzp:I (2.262) BS02 CA N/A N/A N/A 28794021
    25546 5kzp:J (2.262) BS02 CA N/A N/A N/A 28794021
    25547 5kzp:J (2.262) BS03 CA N/A N/A N/A 28794021
    25548 5kzp:K (2.262) BS02 CA N/A N/A N/A 28794021
    25549 5kzp:K (2.262) BS03 CA N/A N/A N/A 28794021
    25550 5kzp:K (2.262) BS04 CA N/A N/A N/A 28794021
    25551 5kzp:K (2.262) BS05 CA N/A N/A N/A 28794021
    25552 5kzp:L (2.262) BS02 CA N/A N/A N/A 28794021
    25553 5l0k:A (2.73) BS03 CA 3.1.4.39 GO:0001953 ... Q64610 27660691
    25554 5l0k:B (2.73) BS03 CA 3.1.4.39 GO:0001953 ... Q64610 27660691
    25555 5l0r:B (1.5) BS01 CA ? GO:0005509 ... P46531 28775322
    25556 5l0s:B (1.45) BS01 CA 3.4.21.21 GO:0005509 ... P08709 28775322
    25557 5l0t:B (1.43) BS01 CA N/A GO:0005509 ... N/A 28775322
    25558 5l0u:B (1.8) BS01 CA N/A GO:0005509 ... N/A 28775322
    25559 5l0v:B (1.305) BS01 CA N/A GO:0005509 ... N/A 28775322
    25560 5l14:A (1.9) BS01 CA 3.2.1.18 GO:0004308 ... R4NFR6 28934455
    25561 5l15:A (2.4) BS01 CA 3.2.1.18 GO:0004308 ... R4NFR6 28934455
    25562 5l17:A (2.4) BS01 CA 3.2.1.18 GO:0004308 ... R4NFR6 28934455
    25563 5l18:A (1.8) BS01 CA 3.2.1.18 GO:0004308 ... R4NFR6 28934455
    25564 5l1i:A (2.78) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27694439
    25565 5l1i:A (2.78) BS05 CA 2.7.7.7 GO:0003684 ... Q9Y253 27694439
    25566 5l2x:A (2.2) BS03 CA 2.7.7.102
    2.7.7.7    		 GO:0003887 ... Q96LW4 27819052
    25567 5l2x:B (2.2) BS03 CA 2.7.7.102
    2.7.7.7    		 GO:0003887 ... Q96LW4 27819052
    25568 5l2y:H (1.82) BS02 CA 3.4.21.21 GO:0004252 ... P08709 27612545
    25569 5l2z:H (1.79) BS02 CA 3.4.21.21 GO:0004252 ... P08709 27612545
    25570 5l30:H (1.73) BS02 CA 3.4.21.21 GO:0004252 ... P08709 27612545
    25571 5l3u:E (1.23) BS02 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    25572 5l3u:E (1.23) BS03 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    25573 5l3u:E (1.23) BS04 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    25574 5l3u:E (1.23) BS05 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    25575 5l41:E (1.25) BS02 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    25576 5l41:E (1.25) BS03 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    25577 5l41:E (1.25) BS04 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    25578 5l41:E (1.25) BS05 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    25579 5l73:A (2.24) BS01 CA ? GO:0016020 ... O14786 27720589
    25580 5l73:B (2.24) BS01 CA ? GO:0016020 ... O14786 27720589
    25581 5l73:B (2.24) BS02 CA ? GO:0016020 ... O14786 27720589
    25582 5l79:A (2.07) BS03 CA 3.4.24.65 GO:0004222 ... P39900 27564088
    25583 5l79:A (2.07) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27564088
    25584 5l79:A (2.07) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27564088
    25585 5l7f:A (1.8) BS03 CA 3.4.24.65 GO:0004222 ... P39900 27564088
    25586 5l7f:A (1.8) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27564088
    25587 5l7f:A (1.8) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27564088
    25588 5l7f:B (1.8) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27564088
    25589 5l7f:B (1.8) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27564088
    25590 5l7f:B (1.8) BS07 CA 3.4.24.65 GO:0004222 ... P39900 27564088
    25591 5l89:L (2.59) BS01 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    25592 5l89:M (2.59) BS01 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    25593 5l89:P (2.59) BS01 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    25594 5l89:R (2.59) BS01 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    25595 5l89:U (2.59) BS01 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    25596 5l89:V (2.59) BS01 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    25597 5l8b:A (2.21) BS01 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    25598 5l8b:B (2.21) BS01 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    25599 5l8b:C (2.21) BS01 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    25600 5l8b:D (2.21) BS01 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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