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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    25201 5jpv:B (1.9) BS04 CA ? N/A P07306 28230359
    25202 5jq1:A (1.83) BS01 CA ? N/A P07306 28230359
    25203 5jq1:A (1.83) BS02 CA ? N/A P07306 28230359
    25204 5jq1:A (1.83) BS03 CA ? N/A P07306 28230359
    25205 5jq1:B (1.83) BS01 CA ? N/A P07306 28230359
    25206 5jq1:B (1.83) BS02 CA ? N/A P07306 28230359
    25207 5jq1:B (1.83) BS04 CA ? N/A P07306 28230359
    25208 5jqa:A (1.8) BS02 CA ? GO:0000086 ... P0DP23 N/A
    25209 5jqa:A (1.8) BS03 CA ? GO:0000086 ... P0DP23 N/A
    25210 5jqa:A (1.8) BS04 CA ? GO:0000086 ... P0DP23 N/A
    25211 5jqa:A (1.8) BS05 CA ? GO:0000086 ... P0DP23 N/A
    25212 5jqg:A (2.24) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 27357539
    25213 5jqg:C (2.24) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 27357539
    25214 5jqp:B (2.2) BS01 CA ? N/A G0S9M2 27576940
    25215 5jqp:B (2.2) BS02 CA ? N/A G0S9M2 27576940
    25216 5jrc:A (1.9) BS01 CA ? GO:0003723 ... Q74ML9 27596600
    25217 5jrc:C (1.9) BS02 CA ? GO:0003723 ... Q74ML9 27596600
    25218 5jrc:C (1.9) BS03 CA ? GO:0003723 ... Q74ML9 27596600
    25219 5jrc:D (1.9) BS01 CA ? GO:0003723 ... Q74ML9 27596600
    25220 5jrj:A (1.7) BS03 CA ? GO:0003677 ... D8IYL4 27447485
    25221 5js3:E (1.16) BS02 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    25222 5js3:E (1.16) BS03 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    25223 5js3:E (1.16) BS04 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    25224 5js3:E (1.16) BS05 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    25225 5jss:E (1.19) BS02 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    25226 5jss:E (1.19) BS03 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    25227 5jss:E (1.19) BS04 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    25228 5jss:E (1.19) BS05 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    25229 5jt9:E (1.26) BS02 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    25230 5jt9:E (1.26) BS03 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    25231 5jt9:E (1.26) BS04 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    25232 5jt9:E (1.26) BS05 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    25233 5jth:A (1.84) BS02 CA ? GO:0000086 ... P0DP23 N/A
    25234 5jth:A (1.84) BS03 CA ? GO:0000086 ... P0DP23 N/A
    25235 5jth:A (1.84) BS04 CA ? GO:0000086 ... P0DP23 N/A
    25236 5jth:A (1.84) BS05 CA ? GO:0000086 ... P0DP23 N/A
    25237 5juh:A (1.35) BS01 CA ? N/A A1YIY3 28808685
    25238 5juh:A (1.35) BS02 CA ? N/A A1YIY3 28808685
    25239 5juh:A (1.35) BS03 CA ? N/A A1YIY3 28808685
    25240 5juh:A (1.35) BS04 CA ? N/A A1YIY3 28808685
    25241 5juh:A (1.35) BS05 CA ? N/A A1YIY3 28808685
    25242 5juh:A (1.35) BS06 CA ? N/A A1YIY3 28808685
    25243 5juh:A (1.35) BS07 CA ? N/A A1YIY3 28808685
    25244 5jum:A (2.6) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27556902
    25245 5jum:A (2.6) BS05 CA 2.7.7.7 GO:0003684 ... Q9Y253 27556902
    25246 5jvd:A (2.393) BS02 CA 3.6.5.- GO:0000226 ... P81947 27224920
    25247 5jvd:C (2.393) BS02 CA 3.6.5.- GO:0000226 ... P81947 27224920
    25248 5jvi:E (1.12) BS02 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    25249 5jvi:E (1.12) BS03 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    25250 5jvi:E (1.12) BS04 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    25251 5jvi:E (1.12) BS05 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    25252 5jwz:A (1.695) BS01 CA ? N/A G2NK78 N/A
    25253 5jwz:A (1.695) BS02 CA ? N/A G2NK78 N/A
    25254 5jwz:B (1.695) BS01 CA ? N/A G2NK78 N/A
    25255 5jx2:A (2.0504) BS01 CA ? GO:0005886 ... Q08255 27536942
    25256 5jxg:A (1.8) BS01 CA 3.4.21.75 GO:0004252 ... P09958 27647913
    25257 5jxg:A (1.8) BS02 CA 3.4.21.75 GO:0004252 ... P09958 27647913
    25258 5jxg:A (1.8) BS03 CA 3.4.21.75 GO:0004252 ... P09958 27647913
    25259 5jxh:A (2.0) BS02 CA 3.4.21.75 GO:0004252 ... P09958 27647913
    25260 5jxh:A (2.0) BS03 CA 3.4.21.75 GO:0004252 ... P09958 27647913
    25261 5jxh:A (2.0) BS04 CA 3.4.21.75 GO:0004252 ... P09958 27647913
    25262 5jxi:A (2.0) BS01 CA 3.4.21.75 GO:0004252 ... P09958 27647913
    25263 5jxj:A (2.0) BS02 CA 3.4.21.75 GO:0004252 ... P09958 27647913
    25264 5jxn:E (1.38) BS02 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    25265 5jxn:E (1.38) BS03 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    25266 5jxn:E (1.38) BS04 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    25267 5jxn:E (1.38) BS05 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    25268 5jxp:A (2.5) BS01 CA 3.4.14.- GO:0004177 ... F8WQK8 28588213
    25269 5jy7:A (3.6) BS01 CA 3.2.1.1
    5.4.99.16    		 GO:0000023 ... A0R6E0 30877199
    25270 5jy7:B (3.6) BS01 CA 3.2.1.1
    5.4.99.16    		 GO:0000023 ... A0R6E0 30877199
    25271 5jy7:C (3.6) BS01 CA 3.2.1.1
    5.4.99.16    		 GO:0000023 ... A0R6E0 30877199
    25272 5jy7:D (3.6) BS01 CA 3.2.1.1
    5.4.99.16    		 GO:0000023 ... A0R6E0 30877199
    25273 5jy7:E (3.6) BS01 CA 3.2.1.1
    5.4.99.16    		 GO:0000023 ... A0R6E0 30877199
    25274 5jy7:F (3.6) BS01 CA 3.2.1.1
    5.4.99.16    		 GO:0000023 ... A0R6E0 30877199
    25275 5jy7:G (3.6) BS01 CA 3.2.1.1
    5.4.99.16    		 GO:0000023 ... A0R6E0 30877199
    25276 5jy7:H (3.6) BS01 CA 3.2.1.1
    5.4.99.16    		 GO:0000023 ... A0R6E0 30877199
    25277 5jyi:A (1.914) BS01 CA 3.4.21.4 GO:0004252 ... P00760 N/A
    25278 5jym:A (2.45) BS01 CA ? GO:0005509 ... P22223 28045038
    25279 5jym:A (2.45) BS02 CA ? GO:0005509 ... P22223 28045038
    25280 5jym:A (2.45) BS03 CA ? GO:0005509 ... P22223 28045038
    25281 5jym:C (2.45) BS01 CA ? GO:0005509 ... P22223 28045038
    25282 5jym:C (2.45) BS02 CA ? GO:0005509 ... P22223 28045038
    25283 5jym:C (2.45) BS03 CA ? GO:0005509 ... P22223 28045038
    25284 5jyy:A (2.1) BS01 CA 3.2.1.18 GO:0004308 ... R4NFR6 27341624
    25285 5k0h:A (2.2) BS01 CA 3.4.21.6 GO:0004252 ... P00742 16848746
    25286 5k0h:A (2.2) BS02 CA 3.4.21.6 GO:0004252 ... P00742 16848746
    25287 5k21:A (1.8) BS02 CA ? GO:0016853 ... K0V2D8 27940577
    25288 5k21:B (1.8) BS02 CA ? GO:0016853 ... K0V2D8 27940577
    25289 5k21:C (1.8) BS02 CA ? GO:0016853 ... K0V2D8 27940577
    25290 5k31:A (2.2) BS01 CA ? GO:0005201 ... P02452 28281531
    25291 5k31:B (2.2) BS01 CA ? GO:0005201 ... P02452 28281531
    25292 5k31:C (2.2) BS01 CA ? GO:0005201 ... P02452 28281531
    25293 5k31:D (2.2) BS01 CA ? GO:0005201 ... P02452 28281531
    25294 5k31:E (2.2) BS01 CA ? GO:0005201 ... P02452 28281531
    25295 5k31:F (2.2) BS01 CA ? GO:0005201 ... P02452 28281531
    25296 5k39:B (1.98) BS01 CA ? GO:0000272 ... A3DGE8 27924829
    25297 5k39:B (1.98) BS02 CA ? GO:0000272 ... A3DGE8 27924829
    25298 5k5s:A (2.6) BS02 CA ? GO:0004930 ... P41180 27434672
    25299 5k5s:A (2.6) BS03 CA ? GO:0004930 ... P41180 27434672
    25300 5k5s:A (2.6) BS04 CA ? GO:0004930 ... P41180 27434672
    25301 5k5s:B (2.6) BS01 CA ? GO:0004930 ... P41180 27434672
    25302 5k5s:B (2.6) BS03 CA ? GO:0004930 ... P41180 27434672
    25303 5k5s:B (2.6) BS04 CA ? GO:0004930 ... P41180 27434672
    25304 5k5t:A (3.1) BS01 CA ? GO:0004930 ... P41180 27434672
    25305 5k7r:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 28192420
    25306 5k7r:A (1.7) BS02 CA 3.4.21.4 GO:0004175 ... P00760 28192420
    25307 5k7s:A (1.6) BS01 CA 3.4.21.64 GO:0004252 ... P06873 28192420
    25308 5k7s:A (1.6) BS02 CA 3.4.21.64 GO:0004252 ... P06873 28192420
    25309 5k7t:A (2.5) BS01 CA 3.4.24.27 GO:0004222 ... P00800 28192420
    25310 5k7t:A (2.5) BS02 CA 3.4.24.27 GO:0004222 ... P00800 28192420
    25311 5k7t:A (2.5) BS03 CA 3.4.24.27 GO:0004222 ... P00800 28192420
    25312 5k7t:A (2.5) BS04 CA 3.4.24.27 GO:0004222 ... P00800 28192420
    25313 5k89:A (2.249) BS01 CA ? GO:0005509 ... P23297 28368280
    25314 5k89:A (2.249) BS02 CA ? GO:0005509 ... P23297 28368280
    25315 5k89:C (2.249) BS01 CA ? GO:0005509 ... P23297 28368280
    25316 5k89:C (2.249) BS02 CA ? GO:0005509 ... P23297 28368280
    25317 5k89:H (2.249) BS01 CA ? GO:0005509 ... P23297 28368280
    25318 5k89:H (2.249) BS02 CA ? GO:0005509 ... P23297 28368280
    25319 5k8d:A (4.19) BS01 CA ? GO:0005507 ... P00451 28397397
    25320 5k8d:A (4.19) BS02 CA ? GO:0005507 ... P00451 28397397
    25321 5k8d:A (4.19) BS03 CA ? GO:0005507 ... P00451 28397397
    25322 5k8g:A (2.0) BS01 CA ? N/A A1YIY3 28808685
    25323 5k8g:A (2.0) BS02 CA ? N/A A1YIY3 28808685
    25324 5k8g:A (2.0) BS03 CA ? N/A A1YIY3 28808685
    25325 5k8g:A (2.0) BS04 CA ? N/A A1YIY3 28808685
    25326 5k8g:A (2.0) BS05 CA ? N/A A1YIY3 28808685
    25327 5k8g:A (2.0) BS06 CA ? N/A A1YIY3 28808685
    25328 5k8g:A (2.0) BS07 CA ? N/A A1YIY3 28808685
    25329 5k8g:A (2.0) BS08 CA ? N/A A1YIY3 28808685
    25330 5k8g:A (2.0) BS09 CA ? N/A A1YIY3 28808685
    25331 5k8g:A (2.0) BS10 CA ? N/A A1YIY3 28808685
    25332 5k8g:A (2.0) BS11 CA ? N/A A1YIY3 28808685
    25333 5k8g:A (2.0) BS12 CA ? N/A A1YIY3 28808685
    25334 5k8g:A (2.0) BS13 CA ? N/A A1YIY3 28808685
    25335 5k8g:A (2.0) BS14 CA ? N/A A1YIY3 28808685
    25336 5k8q:A (1.739) BS02 CA ? GO:0000086 ... P0DP23 27563101
    25337 5k8q:A (1.739) BS03 CA ? GO:0000086 ... P0DP23 27563101
    25338 5k8q:A (1.739) BS04 CA ? GO:0000086 ... P0DP23 27563101
    25339 5k8q:A (1.739) BS05 CA ? GO:0000086 ... P0DP23 27563101
    25340 5k8r:A (2.5) BS01 CA ? GO:0005509 ... Q9Y5G1 27472898
    25341 5k8r:A (2.5) BS02 CA ? GO:0005509 ... Q9Y5G1 27472898
    25342 5k8r:A (2.5) BS03 CA ? GO:0005509 ... Q9Y5G1 27472898
    25343 5k8r:A (2.5) BS04 CA ? GO:0005509 ... Q9Y5G1 27472898
    25344 5k8r:A (2.5) BS05 CA ? GO:0005509 ... Q9Y5G1 27472898
    25345 5k8r:A (2.5) BS06 CA ? GO:0005509 ... Q9Y5G1 27472898
    25346 5k8r:A (2.5) BS07 CA ? GO:0005509 ... Q9Y5G1 27472898
    25347 5k8r:A (2.5) BS08 CA ? GO:0005509 ... Q9Y5G1 27472898
    25348 5k8r:A (2.5) BS09 CA ? GO:0005509 ... Q9Y5G1 27472898
    25349 5k8y:A (2.4) BS01 CA ? N/A Q8VBX4 27903635
    25350 5k8y:B (2.4) BS01 CA ? N/A Q8VBX4 27903635
    25351 5kc8:A (1.751) BS01 CA ? N/A O43424 27418511
    25352 5kca:A (3.1) BS01 CA ? N/A O43424
    P23435    		 27418511
    25353 5kdf:A (2.45) BS02 CA 3.6.1.1 GO:0000287 ... P9WI55 27622287
    25354 5kdf:A (2.45) BS03 CA 3.6.1.1 GO:0000287 ... P9WI55 27622287
    25355 5kee:A (1.5) BS01 CA 3.1.31.1 N/A P00644 N/A
    25356 5kez:A (1.83) BS02 CA 3.2.1.1 GO:0003824 ... P04746 28262556
    25357 5kfa:A (1.51) BS03 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    25358 5kfb:A (1.55) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    25359 5kfc:A (1.5) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    25360 5kfd:A (1.65) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    25361 5kfe:A (1.55) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    25362 5kfg:A (1.55) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    25363 5kfh:A (1.72) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    25364 5kfi:A (1.65) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    25365 5kfj:A (1.7) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    25366 5kfk:A (1.7) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    25367 5kfm:A (1.6) BS03 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    25368 5kfn:A (1.45) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    25369 5kfo:A (1.52) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    25370 5kfp:A (1.7) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    25371 5kfq:A (1.55) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    25372 5kfs:A (1.46) BS03 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    25373 5kft:A (1.52) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    25374 5kfu:A (1.55) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    25375 5kfv:A (1.6) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    25376 5kfw:A (1.62) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    25377 5kfx:A (1.52) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    25378 5kgu:A (1.9) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    25379 5kia:A (2.1) BS02 CA 1.1.1.103 GO:0005737 ... Q2T9E1 N/A
    25380 5kiq:A (1.638) BS02 CA ? N/A A3CM52 27685666
    25381 5kiq:A (1.638) BS03 CA ? N/A A3CM52 27685666
    25382 5kiq:B (1.638) BS01 CA ? N/A A3CM52 27685666
    25383 5kiq:B (1.638) BS02 CA ? N/A A3CM52 27685666
    25384 5kis:A (2.4) BS01 CA ? GO:0005515 ... B6A880 N/A
    25385 5kix:A (1.75) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    25386 5kj4:A (3.35) BS01 CA ? GO:0005509 ... Q99PJ1 27857071
    25387 5kj4:A (3.35) BS02 CA ? GO:0005509 ... Q99PJ1 27857071
    25388 5kj4:A (3.35) BS03 CA ? GO:0005509 ... Q99PJ1 27857071
    25389 5kj4:B (3.35) BS01 CA ? GO:0005509 ... Q99PJ1 27857071
    25390 5kj4:B (3.35) BS02 CA ? GO:0005509 ... Q99PJ1 27857071
    25391 5kj4:B (3.35) BS03 CA ? GO:0005509 ... Q99PJ1 27857071
    25392 5kj4:C (3.35) BS01 CA ? GO:0005509 ... Q99PJ1 27857071
    25393 5kj4:C (3.35) BS02 CA ? GO:0005509 ... Q99PJ1 27857071
    25394 5kj4:C (3.35) BS03 CA ? GO:0005509 ... Q99PJ1 27857071
    25395 5kj4:D (3.35) BS01 CA ? GO:0005509 ... Q99PJ1 27857071
    25396 5kj4:D (3.35) BS02 CA ? GO:0005509 ... Q99PJ1 27857071
    25397 5kj4:D (3.35) BS03 CA ? GO:0005509 ... Q99PJ1 27857071
    25398 5kj7:E (3.5) BS01 CA ? GO:0016020 ... P21707 27731796
    25399 5kj7:E (3.5) BS02 CA ? GO:0016020 ... P21707 27731796
    25400 5kj7:E (3.5) BS03 CA ? GO:0016020 ... P21707 27731796
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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