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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    25001 5ioc:A (1.9) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    25002 5iod:A (1.6) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    25003 5irb:A (2.0) BS01 CA ? N/A A1YIY2 28808685
    25004 5irb:A (2.0) BS02 CA ? N/A A1YIY2 28808685
    25005 5irb:A (2.0) BS03 CA ? N/A A1YIY2 28808685
    25006 5irb:A (2.0) BS04 CA ? N/A A1YIY2 28808685
    25007 5irb:A (2.0) BS05 CA ? N/A A1YIY2 28808685
    25008 5irb:A (2.0) BS06 CA ? N/A A1YIY2 28808685
    25009 5irb:A (2.0) BS07 CA ? N/A A1YIY2 28808685
    25010 5irb:A (2.0) BS08 CA ? N/A A1YIY2 28808685
    25011 5irb:A (2.0) BS09 CA ? N/A A1YIY2 28808685
    25012 5irb:B (2.0) BS01 CA ? N/A A1YIY2 28808685
    25013 5irb:B (2.0) BS02 CA ? N/A A1YIY2 28808685
    25014 5irb:B (2.0) BS03 CA ? N/A A1YIY2 28808685
    25015 5irb:B (2.0) BS04 CA ? N/A A1YIY2 28808685
    25016 5irb:B (2.0) BS05 CA ? N/A A1YIY2 28808685
    25017 5irb:B (2.0) BS06 CA ? N/A A1YIY2 28808685
    25018 5irb:B (2.0) BS07 CA ? N/A A1YIY2 28808685
    25019 5irb:B (2.0) BS08 CA ? N/A A1YIY2 28808685
    25020 5iry:A (3.095) BS01 CA ? GO:0005509 ... Q08554 27298358
    25021 5iry:A (3.095) BS02 CA ? GO:0005509 ... Q08554 27298358
    25022 5iry:A (3.095) BS03 CA ? GO:0005509 ... Q08554 27298358
    25023 5iry:A (3.095) BS04 CA ? GO:0005509 ... Q08554 27298358
    25024 5iry:A (3.095) BS05 CA ? GO:0005509 ... Q08554 27298358
    25025 5iry:A (3.095) BS06 CA ? GO:0005509 ... Q08554 27298358
    25026 5iry:A (3.095) BS07 CA ? GO:0005509 ... Q08554 27298358
    25027 5iry:A (3.095) BS08 CA ? GO:0005509 ... Q08554 27298358
    25028 5iry:A (3.095) BS09 CA ? GO:0005509 ... Q08554 27298358
    25029 5iry:A (3.095) BS10 CA ? GO:0005509 ... Q08554 27298358
    25030 5iry:A (3.095) BS11 CA ? GO:0005509 ... Q08554 27298358
    25031 5iry:A (3.095) BS12 CA ? GO:0005509 ... Q08554 27298358
    25032 5iry:B (3.095) BS01 CA ? GO:0005509 ... Q08554 27298358
    25033 5iry:B (3.095) BS02 CA ? GO:0005509 ... Q08554 27298358
    25034 5iry:B (3.095) BS03 CA ? GO:0005509 ... Q08554 27298358
    25035 5iry:B (3.095) BS04 CA ? GO:0005509 ... Q08554 27298358
    25036 5iry:B (3.095) BS05 CA ? GO:0005509 ... Q08554 27298358
    25037 5iry:B (3.095) BS06 CA ? GO:0005509 ... Q08554 27298358
    25038 5iry:B (3.095) BS07 CA ? GO:0005509 ... Q08554 27298358
    25039 5iry:B (3.095) BS08 CA ? GO:0005509 ... Q08554 27298358
    25040 5iry:B (3.095) BS09 CA ? GO:0005509 ... Q08554 27298358
    25041 5iry:B (3.095) BS10 CA ? GO:0005509 ... Q08554 27298358
    25042 5iry:B (3.095) BS11 CA ? GO:0005509 ... Q08554 27298358
    25043 5iry:B (3.095) BS12 CA ? GO:0005509 ... Q08554 27298358
    25044 5isr:A (1.9) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    25045 5iti:A (1.95) BS01 CA 3.1.3.16 GO:0004722 ... Q8DGS1 N/A
    25046 5iti:A (1.95) BS02 CA 3.1.3.16 GO:0004722 ... Q8DGS1 N/A
    25047 5iti:A (1.95) BS03 CA 3.1.3.16 GO:0004722 ... Q8DGS1 N/A
    25048 5iti:A (1.95) BS04 CA 3.1.3.16 GO:0004722 ... Q8DGS1 N/A
    25049 5iu9:A (3.59) BS01 CA ? GO:0005509 ... F8W3X3 27787195
    25050 5iu9:A (3.59) BS02 CA ? GO:0005509 ... F8W3X3 27787195
    25051 5iu9:A (3.59) BS03 CA ? GO:0005509 ... F8W3X3 27787195
    25052 5iu9:A (3.59) BS04 CA ? GO:0005509 ... F8W3X3 27787195
    25053 5iu9:A (3.59) BS05 CA ? GO:0005509 ... F8W3X3 27787195
    25054 5iu9:A (3.59) BS06 CA ? GO:0005509 ... F8W3X3 27787195
    25055 5iu9:A (3.59) BS07 CA ? GO:0005509 ... F8W3X3 27787195
    25056 5iu9:A (3.59) BS08 CA ? GO:0005509 ... F8W3X3 27787195
    25057 5iu9:A (3.59) BS09 CA ? GO:0005509 ... F8W3X3 27787195
    25058 5iu9:B (3.59) BS01 CA ? GO:0005509 ... F8W3X3 27787195
    25059 5iu9:B (3.59) BS02 CA ? GO:0005509 ... F8W3X3 27787195
    25060 5iu9:B (3.59) BS03 CA ? GO:0005509 ... F8W3X3 27787195
    25061 5iu9:B (3.59) BS04 CA ? GO:0005509 ... F8W3X3 27787195
    25062 5iu9:B (3.59) BS05 CA ? GO:0005509 ... F8W3X3 27787195
    25063 5iu9:B (3.59) BS06 CA ? GO:0005509 ... F8W3X3 27787195
    25064 5iu9:B (3.59) BS07 CA ? GO:0005509 ... F8W3X3 27787195
    25065 5iu9:B (3.59) BS08 CA ? GO:0005509 ... F8W3X3 27787195
    25066 5iu9:B (3.59) BS09 CA ? GO:0005509 ... F8W3X3 27787195
    25067 5iv3:A (1.86) BS03 CA 4.6.1.1 GO:0009190 ... Q96PN6 27547922
    25068 5iwg:A (1.66) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 27377864
    25069 5iwg:A (1.66) BS04 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 27377864
    25070 5iwg:B (1.66) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 27377864
    25071 5iwg:B (1.66) BS04 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 27377864
    25072 5iwg:C (1.66) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 27377864
    25073 5iwg:C (1.66) BS04 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 27377864
    25074 5ix0:A (1.72) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 27377864
    25075 5ix0:A (1.72) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 27377864
    25076 5ix0:B (1.72) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 27377864
    25077 5ix0:B (1.72) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 27377864
    25078 5ix0:C (1.72) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 27377864
    25079 5ix0:C (1.72) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 27377864
    25080 5iyz:A (1.8) BS02 CA 3.6.5.- GO:0000226 ... P81947 27518442
    25081 5iyz:C (1.8) BS03 CA 3.6.5.- GO:0000226 ... P81947 27518442
    25082 5j03:B (2.0) BS01 CA ? GO:0000086 ... P0DP23 27564677
    25083 5j03:B (2.0) BS02 CA ? GO:0000086 ... P0DP23 27564677
    25084 5j03:B (2.0) BS03 CA ? GO:0000086 ... P0DP23 27564677
    25085 5j03:B (2.0) BS04 CA ? GO:0000086 ... P0DP23 27564677
    25086 5j03:B (2.0) BS05 CA ? GO:0000086 ... P0DP23 27564677
    25087 5j04:A (2.3) BS02 CA 4.2.1.11 GO:0000015 ... Q31QJ8 N/A
    25088 5j04:A (2.3) BS03 CA 4.2.1.11 GO:0000015 ... Q31QJ8 N/A
    25089 5j04:B (2.3) BS02 CA 4.2.1.11 GO:0000015 ... Q31QJ8 N/A
    25090 5j04:B (2.3) BS03 CA 4.2.1.11 GO:0000015 ... Q31QJ8 N/A
    25091 5j16:A (2.4) BS01 CA ? GO:0006020 ... A0A1I9GET0 N/A
    25092 5j16:A (2.4) BS02 CA ? GO:0006020 ... A0A1I9GET0 N/A
    25093 5j16:B (2.4) BS01 CA ? GO:0006020 ... A0A1I9GET0 N/A
    25094 5j16:B (2.4) BS02 CA ? GO:0006020 ... A0A1I9GET0 N/A
    25095 5j16:C (2.4) BS01 CA ? GO:0006020 ... A0A1I9GET0 N/A
    25096 5j16:C (2.4) BS02 CA ? GO:0006020 ... A0A1I9GET0 N/A
    25097 5j16:D (2.4) BS01 CA ? GO:0006020 ... A0A1I9GET0 N/A
    25098 5j16:D (2.4) BS02 CA ? GO:0006020 ... A0A1I9GET0 N/A
    25099 5j1z:A (1.73) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    25100 5j22:A (1.9) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    25101 5j2t:A (2.2) BS03 CA 3.6.5.- GO:0000226 ... P81947 27518442
    25102 5j2u:A (2.5) BS02 CA 3.6.5.- GO:0000226 ... P81947 27518442
    25103 5j2z:A (2.5) BS01 CA ? GO:0019068 ... Q911W0 29216315
    25104 5j2z:A (2.5) BS02 CA ? GO:0019068 ... Q911W0 29216315
    25105 5j2z:A (2.5) BS03 CA ? GO:0019068 ... Q911W0 29216315
    25106 5j2z:A (2.5) BS04 CA ? GO:0019068 ... Q911W0 29216315
    25107 5j3x:A (2.822) BS03 CA 2.3.2.27 GO:0001784 ... P22681 27609087
    25108 5j3x:B (2.822) BS03 CA 2.3.2.27 GO:0001784 ... P22681 27609087
    25109 5j3x:C (2.822) BS03 CA 2.3.2.27 GO:0001784 ... P22681 27609087
    25110 5j3x:D (2.822) BS03 CA 2.3.2.27 GO:0001784 ... P22681 27609087
    25111 5j3x:E (2.822) BS03 CA 2.3.2.27 GO:0001784 ... P22681 27609087
    25112 5j3x:F (2.822) BS03 CA 2.3.2.27 GO:0001784 ... P22681 27609087
    25113 5j4h:A (1.374) BS02 CA ? GO:0003677 ... O74036 27725183
    25114 5j4k:A (1.346) BS01 CA ? GO:0003677 ... O74036 27725183
    25115 5j5j:A (3.29) BS04 CA ? GO:0005509 ... Q02487
    Q14126    		 27298358
    25116 5j5j:A (3.29) BS05 CA ? GO:0005509 ... Q02487
    Q14126    		 27298358
    25117 5j5j:A (3.29) BS06 CA ? GO:0005509 ... Q02487
    Q14126    		 27298358
    25118 5j5j:A (3.29) BS07 CA ? GO:0005509 ... Q02487
    Q14126    		 27298358
    25119 5j5j:A (3.29) BS08 CA ? GO:0005509 ... Q02487
    Q14126    		 27298358
    25120 5j5j:A (3.29) BS09 CA ? GO:0005509 ... Q02487
    Q14126    		 27298358
    25121 5j5j:A (3.29) BS10 CA ? GO:0005509 ... Q02487
    Q14126    		 27298358
    25122 5j5j:A (3.29) BS11 CA ? GO:0005509 ... Q02487
    Q14126    		 27298358
    25123 5j5j:A (3.29) BS12 CA ? GO:0005509 ... Q02487
    Q14126    		 27298358
    25124 5j5j:A (3.29) BS13 CA ? GO:0005509 ... Q02487
    Q14126    		 27298358
    25125 5j5j:A (3.29) BS14 CA ? GO:0005509 ... Q02487
    Q14126    		 27298358
    25126 5j6y:A (1.03) BS01 CA ? N/A A1YIY3 28808685
    25127 5j6y:A (1.03) BS02 CA ? N/A A1YIY3 28808685
    25128 5j6y:A (1.03) BS03 CA ? N/A A1YIY3 28808685
    25129 5j6y:A (1.03) BS04 CA ? N/A A1YIY3 28808685
    25130 5j6y:A (1.03) BS05 CA ? N/A A1YIY3 28808685
    25131 5j6y:A (1.03) BS06 CA ? N/A A1YIY3 28808685
    25132 5j72:A (1.7) BS01 CA 3.5.1.28 GO:0008745 ... Q183L9 28132783
    25133 5j72:B (1.7) BS01 CA 3.5.1.28 GO:0008745 ... Q183L9 28132783
    25134 5j72:B (1.7) BS02 CA 3.5.1.28 GO:0008745 ... Q183L9 28132783
    25135 5j7j:A (-1.00) BS02 CA ? GO:0005102 ... P0DP33 29118000
    25136 5j7j:A (-1.00) BS03 CA ? GO:0005102 ... P0DP33 29118000
    25137 5j7j:A (-1.00) BS04 CA ? GO:0005102 ... P0DP33 29118000
    25138 5j7j:A (-1.00) BS05 CA ? GO:0005102 ... P0DP33 29118000
    25139 5j8h:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23 27499441
    25140 5j8h:A (-1.00) BS03 CA ? GO:0000086 ... P0DP23 27499441
    25141 5j8t:A (-1.00) BS01 CA N/A N/A N/A N/A
    25142 5jao:A (2.06) BS01 CA 3.1.1.47 GO:0003847 ... Q13093 27167608
    25143 5jav:A (1.895) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    25144 5jax:A (1.486) BS02 CA 2.7.11.12 GO:0004692 ... Q13976 28793191
    25145 5jax:A (1.486) BS03 CA 2.7.11.12 GO:0004692 ... Q13976 28793191
    25146 5jb8:S (1.45) BS01 CA 3.4.21.22 GO:0004252 ... P00740 27208168
    25147 5jb9:S (1.3) BS02 CA 3.4.21.22 GO:0004252 ... P00740 27208168
    25148 5jba:S (1.4) BS01 CA 3.4.21.22 GO:0004252 ... P00740 27208168
    25149 5jbb:S (1.56) BS01 CA 3.4.21.22 GO:0004252 ... P00740 27208168
    25150 5jbc:S (1.9) BS01 CA 3.4.21.22 GO:0004252 ... P00740 27208168
    25151 5jbd:A (1.8) BS01 CA 2.4.1.5 GO:0009250 ... Q5SBM0 28065507
    25152 5jbd:B (1.8) BS01 CA 2.4.1.5 GO:0009250 ... Q5SBM0 28065507
    25153 5jbe:A (2.1) BS05 CA 2.4.1.5 GO:0009250 ... Q5SBM0 28065507
    25154 5jbe:B (2.1) BS07 CA 2.4.1.5 GO:0009250 ... Q5SBM0 28065507
    25155 5jbf:A (2.19) BS08 CA 2.4.1.5 GO:0009250 ... Q5SBM0 28065507
    25156 5jbf:B (2.19) BS10 CA 2.4.1.5 GO:0009250 ... Q5SBM0 28065507
    25157 5jbt:A (1.4) BS02 CA 3.4.21.4 GO:0004252 ... P35030 27810896
    25158 5jcb:A (2.3) BS03 CA 3.6.5.- GO:0000226 ... Q2XVP4 28035796
    25159 5jcw:A (1.945) BS02 CA 2.5.1.18 GO:0000302 ... P09211 27684484
    25160 5jcw:A (1.945) BS03 CA 2.5.1.18 GO:0000302 ... P09211 27684484
    25161 5jcw:B (1.945) BS03 CA 2.5.1.18 GO:0000302 ... P09211 27684484
    25162 5jcw:B (1.945) BS04 CA 2.5.1.18 GO:0000302 ... P09211 27684484
    25163 5jdf:A (2.65) BS01 CA ? GO:0005262 ... Q57556 27183196
    25164 5jdf:A (2.65) BS02 CA ? GO:0005262 ... Q57556 27183196
    25165 5jdg:A (2.407) BS03 CA ? GO:0005262 ... Q57556 27183196
    25166 5jdh:A (2.203) BS02 CA ? GO:0005262 ... Q57556 27183196
    25167 5jdh:A (2.203) BS03 CA ? GO:0005262 ... Q57556 27183196
    25168 5jdj:B (1.738) BS01 CA 2.7.11.1 N/A Q8WZ42 27683155
    25169 5jdj:E (1.738) BS01 CA 2.7.11.1 N/A Q8WZ42 27683155
    25170 5jdj:I (1.738) BS01 CA 2.7.11.1 N/A Q8WZ42 27683155
    25171 5jdj:L (1.738) BS01 CA 2.7.11.1 N/A Q8WZ42 27683155
    25172 5jee:A (1.49) BS01 CA ? GO:0003677 ... O74036 27725183
    25173 5jfg:A (1.77) BS02 CA ? GO:0003677 ... O74036 N/A
    25174 5jh7:A (2.25) BS02 CA 3.6.5.- GO:0000226 ... P81947 27321995
    25175 5jh7:C (2.25) BS03 CA 3.6.5.- GO:0000226 ... P81947 27321995
    25176 5jix:A (1.47) BS01 CA 2.7.11.12 GO:0004692 ... Q13237 28793191
    25177 5jj4:A (2.807) BS06 CA 3.5.4.38 GO:0003824 ... P0AEY0
    Q9GZX7    		 27258794
    25178 5jj4:B (2.807) BS06 CA 3.5.4.38 GO:0003824 ... P0AEY0
    Q9GZX7    		 27258794
    25179 5jj4:C (2.807) BS06 CA 3.5.4.38 GO:0003824 ... P0AEY0
    Q9GZX7    		 27258794
    25180 5jmo:A (1.998) BS03 CA 3.4.21.75 GO:0004252 ... P09958 27670069
    25181 5jmo:A (1.998) BS04 CA 3.4.21.75 GO:0004252 ... P09958 27670069
    25182 5jmo:A (1.998) BS05 CA 3.4.21.75 GO:0004252 ... P09958 27670069
    25183 5jmo:B (1.998) BS02 CA 3.4.21.75 GO:0004252 ... P09958 27670069
    25184 5jmo:B (1.998) BS03 CA 3.4.21.75 GO:0004252 ... P09958 27670069
    25185 5jmo:B (1.998) BS04 CA 3.4.21.75 GO:0004252 ... P09958 27670069
    25186 5jmq:A (1.795) BS01 CA ? GO:0008168 ... Q3UKX1 27879050
    25187 5jms:A (2.3) BS02 CA ? GO:0004672 ... Q9BJF5 N/A
    25188 5jn2:A (2.2) BS02 CA ? GO:0004672 ... Q9BJF5 N/A
    25189 5jn5:A (1.75) BS01 CA 5.4.2.2 GO:0000287 ... P36871 28117557
    25190 5jn5:B (1.75) BS01 CA 5.4.2.2 GO:0000287 ... P36871 28117557
    25191 5job:A (1.45) BS02 CA 3.1.31.1 N/A P00644 N/A
    25192 5joj:A (-1.00) BS01 CA ? GO:0005509 ... P13796 28145401
    25193 5joj:A (-1.00) BS02 CA ? GO:0005509 ... P13796 28145401
    25194 5joz:A (2.28) BS01 CA 3.2.1.55 GO:0000272 ... A7LXU0 27466444
    25195 5joz:B (2.28) BS01 CA 3.2.1.55 GO:0000272 ... A7LXU0 27466444
    25196 5jpv:A (1.9) BS02 CA ? N/A P07306 28230359
    25197 5jpv:A (1.9) BS03 CA ? N/A P07306 28230359
    25198 5jpv:A (1.9) BS04 CA ? N/A P07306 28230359
    25199 5jpv:B (1.9) BS02 CA ? N/A P07306 28230359
    25200 5jpv:B (1.9) BS03 CA ? N/A P07306 28230359
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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