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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    24801 5hrt:A (1.997) BS05 CA 3.1.4.39 GO:0003676 ... Q9R1E6 27043297
    24802 5hsq:A (1.85) BS02 CA 2.7.13.3 GO:0006355 ... Q7CY45 27466363
    24803 5hug:A (1.85) BS01 CA 3.2.1.18 GO:0004308 ... A0A0C5BL75 27053557
    24804 5hug:A (1.85) BS02 CA 3.2.1.18 GO:0004308 ... A0A0C5BL75 27053557
    24805 5huk:A (2.45) BS03 CA 3.2.1.18 GO:0004308 ... A0A0C4WXC5 27053557
    24806 5huk:B (2.45) BS03 CA 3.2.1.18 GO:0004308 ... A0A0C4WXC5 27053557
    24807 5huk:C (2.45) BS01 CA 3.2.1.18 GO:0004308 ... A0A0C4WXC5 27053557
    24808 5huk:D (2.45) BS02 CA 3.2.1.18 GO:0004308 ... A0A0C4WXC5 27053557
    24809 5hum:A (1.6) BS01 CA 3.2.1.18 GO:0004308 ... A0A0B4N5Z5 27053557
    24810 5hum:B (1.6) BS01 CA 3.2.1.18 GO:0004308 ... A0A0B4N5Z5 27053557
    24811 5hum:C (1.6) BS01 CA 3.2.1.18 GO:0004308 ... A0A0B4N5Z5 27053557
    24812 5hum:D (1.6) BS01 CA 3.2.1.18 GO:0004308 ... A0A0B4N5Z5 27053557
    24813 5hun:A (2.3) BS01 CA 3.2.1.18 GO:0004308 ... A0A0C4WVM3 27053557
    24814 5hur:A (1.5) BS01 CA 3.1.31.1 N/A P00644 N/A
    24815 5hxc:A (2.101) BS01 CA ? GO:0005262 ... Q57556 27183196
    24816 5hxh:A (2.804) BS01 CA ? GO:0005262 ... Q57556 27183196
    24817 5hxh:B (2.804) BS01 CA ? GO:0005262 ... Q57556 27183196
    24818 5hxm:A (1.9) BS05 CA 3.2.1.177 GO:0003824 ... Q8Y4J2 28089449
    24819 5hxr:A (2.463) BS01 CA ? GO:0005262 ... Q57556 27183196
    24820 5hxr:A (2.463) BS02 CA ? GO:0005262 ... Q57556 27183196
    24821 5hy7:B (2.9) BS01 CA ? GO:0000398 ... G0S5A2 27720643
    24822 5hya:A (1.897) BS04 CA ? GO:0005262 ... Q57556 27183196
    24823 5hyv:A (1.031) BS02 CA 2.2.1.1 GO:0003824 ... P34736 27578891
    24824 5hzl:B (2.75) BS01 CA ? GO:0046872 ... Q8Y4J3 N/A
    24825 5hzl:B (2.75) BS02 CA ? GO:0046872 ... Q8Y4J3 N/A
    24826 5hzl:B (2.75) BS03 CA ? GO:0046872 ... Q8Y4J3 N/A
    24827 5hzl:B (2.75) BS04 CA ? GO:0046872 ... Q8Y4J3 N/A
    24828 5hzl:B (2.75) BS05 CA ? GO:0046872 ... Q8Y4J3 N/A
    24829 5i0d:A (1.77) BS11 CA ? GO:0003824 ... Q8Y4J2 28089449
    24830 5i0d:B (1.77) BS12 CA ? GO:0003824 ... Q8Y4J2 28089449
    24831 5i0f:B (1.85) BS05 CA N/A GO:0003824 ... N/A 28089449
    24832 5i0f:B (1.85) BS06 CA N/A GO:0003824 ... N/A 28089449
    24833 5i0f:B (1.85) BS07 CA N/A GO:0003824 ... N/A 28089449
    24834 5i0l:A (2.45) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24835 5i0l:A (2.45) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24836 5i0l:A (2.45) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24837 5i0l:B (2.45) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24838 5i0l:B (2.45) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24839 5i0l:B (2.45) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24840 5i0n:A (2.28) BS03 CA 2.7.1.67
    3.2.1.17    		 GO:0003796 ... D9IEF7
    Q9BTU6    		 N/A
    24841 5i12:A (1.59) BS03 CA 3.4.24.35 GO:0004222 ... P14780 27356908
    24842 5i12:A (1.59) BS04 CA 3.4.24.35 GO:0004222 ... P14780 27356908
    24843 5i12:A (1.59) BS05 CA 3.4.24.35 GO:0004222 ... P14780 27356908
    24844 5i29:A (1.21) BS02 CA 2.3.1.48
    2.7.11.1    		 GO:0004402 ... P21675 27219867
    24845 5i2l:A (1.85) BS01 CA ? GO:0005509 ... Q96C19 27974828
    24846 5i2l:A (1.85) BS02 CA ? GO:0005509 ... Q96C19 27974828
    24847 5i2m:C (2.4) BS01 CA ? GO:0016020 ... P0C2X0 16840692
    24848 5i2o:A (1.952) BS01 CA ? GO:0005509 ... Q96C19 27974828
    24849 5i2q:A (1.935) BS01 CA ? GO:0005509 ... Q96C19 27974828
    24850 5i2z:A (2.3) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24851 5i2z:A (2.3) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24852 5i2z:A (2.3) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24853 5i2z:B (2.3) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24854 5i2z:B (2.3) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24855 5i2z:B (2.3) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24856 5i2z:C (2.3) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24857 5i2z:C (2.3) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24858 5i2z:C (2.3) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24859 5i2z:D (2.3) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24860 5i2z:D (2.3) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24861 5i2z:D (2.3) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24862 5i3m:A (2.17) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24863 5i3m:A (2.17) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24864 5i3m:A (2.17) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24865 5i3m:B (2.17) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24866 5i3m:B (2.17) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24867 5i3m:B (2.17) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24868 5i3m:C (2.17) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24869 5i3m:C (2.17) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24870 5i3m:C (2.17) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24871 5i3m:D (2.17) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24872 5i3m:D (2.17) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24873 5i3m:D (2.17) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24874 5i42:A (3.3) BS02 CA 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 27192549
    24875 5i42:C (3.3) BS02 CA 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 27192549
    24876 5i43:A (1.95) BS03 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24877 5i43:A (1.95) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24878 5i43:A (1.95) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24879 5i43:B (1.95) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24880 5i43:B (1.95) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24881 5i43:B (1.95) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24882 5i43:C (1.95) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24883 5i43:C (1.95) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24884 5i43:C (1.95) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24885 5i43:D (1.95) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24886 5i43:D (1.95) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24887 5i43:D (1.95) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24888 5i46:H (2.06) BS02 CA 3.4.21.21 GO:0004252 ... P08709 27015008
    24889 5i4o:A (2.05) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24890 5i4o:A (2.05) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24891 5i4o:A (2.05) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24892 5i4o:B (2.05) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24893 5i4o:B (2.05) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24894 5i4o:B (2.05) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24895 5i4o:C (2.05) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24896 5i4o:C (2.05) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24897 5i4o:C (2.05) BS07 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24898 5i4o:D (2.05) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24899 5i4o:D (2.05) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24900 5i4o:D (2.05) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    24901 5i51:A (1.54) BS03 CA 2.2.1.1 GO:0003824 ... P34736 27578891
    24902 5i5e:A (1.62) BS03 CA 2.2.1.1 GO:0003824 ... P34736 27578891
    24903 5i5l:A (2.7) BS02 CA 2.7.13.3 GO:0006355 ... Q7CY45 27466363
    24904 5i5m:A (1.37) BS01 CA 1.7.2.4 GO:0004129 ... Q12M27 26885878
    24905 5i5m:B (1.37) BS01 CA 1.7.2.4 GO:0004129 ... Q12M27 26885878
    24906 5i6w:A (1.9) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    24907 5i6y:A (1.9) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    24908 5i78:A (1.58) BS01 CA 3.2.1.4 GO:0000272 ... O74706 27154222
    24909 5i78:A (1.58) BS02 CA 3.2.1.4 GO:0000272 ... O74706 27154222
    24910 5i79:B (2.35) BS04 CA 3.2.1.4 GO:0000272 ... O74706 27154222
    24911 5i8d:A (2.69) BS01 CA ? GO:0005509 ... Q99PF4 30033219
    24912 5i8d:A (2.69) BS02 CA ? GO:0005509 ... Q99PF4 30033219
    24913 5i8d:A (2.69) BS03 CA ? GO:0005509 ... Q99PF4 30033219
    24914 5i8d:A (2.69) BS04 CA ? GO:0005509 ... Q99PF4 30033219
    24915 5i8d:A (2.69) BS05 CA ? GO:0005509 ... Q99PF4 30033219
    24916 5i8d:A (2.69) BS06 CA ? GO:0005509 ... Q99PF4 30033219
    24917 5i8d:A (2.69) BS07 CA ? GO:0005509 ... Q99PF4 30033219
    24918 5i8m:A (2.13) BS02 CA ? GO:0030246 ... Q9HYN5 29147502
    24919 5i8m:A (2.13) BS03 CA ? GO:0030246 ... Q9HYN5 29147502
    24920 5i8m:B (2.13) BS02 CA ? GO:0030246 ... Q9HYN5 29147502
    24921 5i8m:B (2.13) BS03 CA ? GO:0030246 ... Q9HYN5 29147502
    24922 5i8m:C (2.13) BS02 CA ? GO:0030246 ... Q9HYN5 29147502
    24923 5i8m:C (2.13) BS04 CA ? GO:0030246 ... Q9HYN5 29147502
    24924 5i8m:D (2.13) BS01 CA ? GO:0030246 ... Q9HYN5 29147502
    24925 5i8m:D (2.13) BS03 CA ? GO:0030246 ... Q9HYN5 29147502
    24926 5i8x:A (1.89) BS02 CA ? GO:0030246 ... Q9HYN5 29147502
    24927 5i8x:A (1.89) BS03 CA ? GO:0030246 ... Q9HYN5 29147502
    24928 5i8x:B (1.89) BS01 CA ? GO:0030246 ... Q9HYN5 29147502
    24929 5i8x:B (1.89) BS02 CA ? GO:0030246 ... Q9HYN5 29147502
    24930 5i8x:C (1.89) BS01 CA ? GO:0030246 ... Q9HYN5 29147502
    24931 5i8x:C (1.89) BS03 CA ? GO:0030246 ... Q9HYN5 29147502
    24932 5i8x:D (1.89) BS01 CA ? GO:0030246 ... Q9HYN5 29147502
    24933 5i8x:D (1.89) BS03 CA ? GO:0030246 ... Q9HYN5 29147502
    24934 5i96:A (1.55) BS01 CA 1.1.1.42 GO:0000287 ... P48735 28193778
    24935 5i96:B (1.55) BS01 CA 1.1.1.42 GO:0000287 ... P48735 28193778
    24936 5i9o:A (1.95) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    24937 5i9o:B (1.95) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    24938 5i9p:A (1.85) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    24939 5ibq:A (1.2) BS02 CA ? GO:0030246 ... Q2JZQ5 N/A
    24940 5ied:B (1.81) BS01 CA ? N/A O08795 27462106
    24941 5ied:B (1.81) BS02 CA ? N/A O08795 27462106
    24942 5iee:B (1.92) BS01 CA ? N/A O08795 27462106
    24943 5iee:B (1.92) BS02 CA ? N/A O08795 27462106
    24944 5ief:B (2.38) BS01 CA ? N/A O08795 27462106
    24945 5ief:B (2.38) BS02 CA ? N/A O08795 27462106
    24946 5ieg:B (1.822) BS01 CA ? N/A O08795 27462106
    24947 5ieg:B (1.822) BS02 CA ? N/A O08795 27462106
    24948 5igb:A (1.8) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    24949 5igc:A (1.8) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    24950 5igd:A (1.8) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    24951 5ige:A (1.8) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    24952 5igf:A (1.7) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    24953 5igg:A (1.7) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    24954 5igv:A (1.55) BS02 CA ? GO:0016740 ... O32553 28416110
    24955 5igy:A (1.45) BS01 CA ? GO:0016740 ... O32553 28416110
    24956 5ih1:A (1.31) BS03 CA ? GO:0016740 ... O32553 28416110
    24957 5ihe:B (2.5) BS04 CA 2.7.7.7
    3.1.11.1    		 GO:0003676 ... Q9V2F3 27548043
    24958 5iif:A (1.85) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    24959 5iiy:A (1.888) BS02 CA ? N/A A3CM52 27685666
    24960 5iiy:A (1.888) BS03 CA ? N/A A3CM52 27685666
    24961 5iiy:B (1.888) BS01 CA ? N/A A3CM52 27685666
    24962 5iiy:B (1.888) BS02 CA ? N/A A3CM52 27685666
    24963 5ij1:A (1.8) BS02 CA ? N/A A3CM52 27685666
    24964 5ij1:A (1.8) BS03 CA ? N/A A3CM52 27685666
    24965 5ij1:B (1.8) BS01 CA ? N/A A3CM52 27685666
    24966 5ij1:B (1.8) BS02 CA ? N/A A3CM52 27685666
    24967 5ij2:A (1.683) BS02 CA ? N/A A3CM52 27685666
    24968 5ij2:A (1.683) BS03 CA ? N/A A3CM52 27685666
    24969 5ij2:B (1.683) BS01 CA ? N/A A3CM52 27685666
    24970 5ij2:B (1.683) BS02 CA ? N/A A3CM52 27685666
    24971 5ij3:A (1.7) BS02 CA ? N/A A3CM52 27685666
    24972 5ij3:A (1.7) BS03 CA ? N/A A3CM52 27685666
    24973 5ij3:B (1.7) BS01 CA ? N/A A3CM52 27685666
    24974 5ij3:B (1.7) BS02 CA ? N/A A3CM52 27685666
    24975 5ijq:A (2.05) BS05 CA 3.1.4.39 GO:0001953 ... Q64610 27268273
    24976 5ijs:A (2.2) BS04 CA 3.1.4.39 GO:0001953 ... Q64610 27268273
    24977 5iju:B (1.7) BS01 CA N/A N/A N/A 27722375
    24978 5ik4:A (1.27) BS01 CA ? N/A Q60675 27526028
    24979 5ik4:A (1.27) BS02 CA ? N/A Q60675 27526028
    24980 5ik5:A (1.39) BS02 CA ? N/A Q60675 27526028
    24981 5ik5:A (1.39) BS03 CA ? N/A Q60675 27526028
    24982 5ik7:A (2.0) BS01 CA ? N/A Q60675 27526028
    24983 5ik7:A (2.0) BS02 CA ? N/A Q60675 27526028
    24984 5ik7:B (2.0) BS01 CA ? N/A Q60675 27526028
    24985 5ik7:B (2.0) BS02 CA ? N/A Q60675 27526028
    24986 5ik8:A (2.0) BS01 CA ? N/A Q60675 27526028
    24987 5ik8:A (2.0) BS02 CA ? N/A Q60675 27526028
    24988 5ik8:B (2.0) BS03 CA ? N/A Q60675 27526028
    24989 5ik8:B (2.0) BS04 CA ? N/A Q60675 27526028
    24990 5iku:A (1.9) BS01 CA 3.4.24.3 N/A Q9X721 30035850
    24991 5iku:A (1.9) BS02 CA 3.4.24.3 N/A Q9X721 30035850
    24992 5iku:A (1.9) BS03 CA 3.4.24.3 N/A Q9X721 30035850
    24993 5iku:A (1.9) BS04 CA 3.4.24.3 N/A Q9X721 30035850
    24994 5il8:A (2.3) BS01 CA 4.2.3.61 GO:0000287 ... Q40577 N/A
    24995 5il8:A (2.3) BS02 CA 4.2.3.61 GO:0000287 ... Q40577 N/A
    24996 5ilh:A (2.1) BS01 CA 4.2.3.61 GO:0000287 ... Q40577 N/A
    24997 5ilh:A (2.1) BS02 CA 4.2.3.61 GO:0000287 ... Q40577 N/A
    24998 5inh:A (1.84) BS05 CA 3.1.4.39 GO:0003676 ... Q9R1E6 28564542
    24999 5inq:A (1.848) BS02 CA 3.1.4.- GO:0003824 ... Q9JJX7 27060144
    25000 5inq:B (1.848) BS02 CA 3.1.4.- GO:0003824 ... Q9JJX7 27060144
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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