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BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    24401 5ftt:C (3.4) BS01 CA ? GO:0004930 ... Q80TS3 27091502
    24402 5ftt:D (3.4) BS01 CA ? GO:0004930 ... Q80TS3 27091502
    24403 5ftt:G (3.4) BS01 CA ? GO:0004930 ... Q80TS3 27091502
    24404 5ftt:H (3.4) BS01 CA ? GO:0004930 ... Q80TS3 27091502
    24405 5ftu:C (6.01) BS01 CA ? GO:0004930 ... Q80TS3 27091502
    24406 5ftu:D (6.01) BS01 CA ? GO:0004930 ... Q80TS3 27091502
    24407 5ftu:G (6.01) BS01 CA ? GO:0004930 ... Q80TS3 27091502
    24408 5ftu:H (6.01) BS01 CA ? GO:0004930 ... Q80TS3 27091502
    24409 5ftu:K (6.01) BS01 CA ? GO:0004930 ... Q80TS3 27091502
    24410 5ftu:L (6.01) BS01 CA ? GO:0004930 ... Q80TS3 27091502
    24411 5ftx:A (4.1) BS01 CA ? N/A O68840 N/A
    24412 5ftx:A (4.1) BS02 CA ? N/A O68840 N/A
    24413 5ftx:A (4.1) BS03 CA ? N/A O68840 N/A
    24414 5ftx:A (4.1) BS04 CA ? N/A O68840 N/A
    24415 5ftx:A (4.1) BS05 CA ? N/A O68840 N/A
    24416 5fty:A (2.6) BS01 CA ? N/A O68840 N/A
    24417 5fty:A (2.6) BS02 CA ? N/A O68840 N/A
    24418 5fty:A (2.6) BS03 CA ? N/A O68840 N/A
    24419 5fty:A (2.6) BS04 CA ? N/A O68840 N/A
    24420 5fty:B (2.6) BS01 CA ? N/A O68840 N/A
    24421 5fty:B (2.6) BS02 CA ? N/A O68840 N/A
    24422 5fty:B (2.6) BS03 CA ? N/A O68840 N/A
    24423 5fty:B (2.6) BS04 CA ? N/A O68840 N/A
    24424 5fu2:B (1.4) BS04 CA ? GO:0046872 ... A0A1A9TAF4 27298375
    24425 5ful:A (1.89) BS02 CA 2.1.1.125 GO:0008168 ... Q3UKX1 27879050
    24426 5fvn:C (1.45) BS04 CA ? GO:0006811 ... Q93K99 27493217
    24427 5fvn:F (1.45) BS02 CA ? GO:0006811 ... Q93K99 27493217
    24428 5fwa:A (1.8) BS02 CA 2.1.1.125 GO:0008168 ... Q3UKX1 27879050
    24429 5fwd:A (2.0) BS02 CA 2.1.1.125 GO:0008168 ... Q3UKX1 27879050
    24430 5fws:A (1.9) BS01 CA ? N/A Q96MU8 27524201
    24431 5fwt:A (2.1) BS01 CA ? N/A Q96MU8 27524201
    24432 5fww:B (3.5) BS01 CA ? N/A Q96MU8 27524201
    24433 5fxl:A (1.78) BS01 CA 3.4.21.4 GO:0004252 ... P00760 27487827
    24434 5fxn:A (1.45) BS04 CA 3.4.24.27 GO:0004222 ... P00800 27487827
    24435 5fxn:A (1.45) BS05 CA 3.4.24.27 GO:0004222 ... P00800 27487827
    24436 5fxn:A (1.45) BS06 CA 3.4.24.27 GO:0004222 ... P00800 27487827
    24437 5fxn:A (1.45) BS07 CA 3.4.24.27 GO:0004222 ... P00800 27487827
    24438 5fyo:A (1.5) BS01 CA ? GO:0006629 ... A0A1S4NYD4 28045383
    24439 5fyo:B (1.5) BS01 CA ? GO:0006629 ... A0A1S4NYD4 28045383
    24440 5fyp:A (1.17) BS01 CA ? GO:0006629 ... A0A1S4NYD4 28045383
    24441 5fyp:B (1.17) BS01 CA ? GO:0006629 ... A0A1S4NYD4 28045383
    24442 5fyp:C (1.17) BS01 CA ? GO:0006629 ... A0A1S4NYD4 28045383
    24443 5fyp:D (1.17) BS01 CA ? GO:0006629 ... A0A1S4NYD4 28045383
    24444 5fyr:A (1.45) BS02 CA ? GO:0006629 ... A0A1S4NYD4 28045383
    24445 5fyr:B (1.45) BS02 CA ? GO:0006629 ... A0A1S4NYD4 28045383
    24446 5fyr:C (1.45) BS02 CA ? GO:0006629 ... A0A1S4NYD4 28045383
    24447 5fyr:D (1.45) BS02 CA ? GO:0006629 ... A0A1S4NYD4 28045383
    24448 5fyx:A (1.8) BS01 CA ? GO:0005509 ... Q9VWX8 28119500
    24449 5fyx:A (1.8) BS02 CA ? GO:0005509 ... Q9VWX8 28119500
    24450 5fyx:A (1.8) BS03 CA ? GO:0005509 ... Q9VWX8 28119500
    24451 5fzp:A (1.7) BS01 CA ? GO:0005576 ... P84908 27493205
    24452 5fzp:A (1.7) BS02 CA ? GO:0005576 ... P84908 27493205
    24453 5fzp:B (1.7) BS01 CA ? GO:0005576 ... P84908 27493205
    24454 5fzp:B (1.7) BS02 CA ? GO:0005576 ... P84908 27493205
    24455 5g08:A (1.52) BS01 CA ? GO:0005509 ... Q9VWX8 28119500
    24456 5g08:A (1.52) BS02 CA ? GO:0005509 ... Q9VWX8 28119500
    24457 5g08:A (1.52) BS03 CA ? GO:0005509 ... Q9VWX8 28119500
    24458 5g2v:A (1.39) BS01 CA 3.1.6.- GO:0016787 ... Q89YS5 28630303
    24459 5g38:A (1.15) BS01 CA ? GO:0009654 ... P0A432 27454911
    24460 5g39:A (1.5) BS01 CA ? GO:0009654 ... P0A432 27454911
    24461 5g3a:A (1.224) BS01 CA ? GO:0009654 ... P0A432 27454911
    24462 5g3m:A (1.85) BS01 CA 3.1.1.4 GO:0001516 ... O15496 27774123
    24463 5g3m:B (1.85) BS01 CA 3.1.1.4 GO:0001516 ... O15496 27774123
    24464 5g3n:A (1.8) BS01 CA 3.1.1.4 GO:0004623 ... P14555 27774123
    24465 5g3n:A (1.8) BS02 CA 3.1.1.4 GO:0004623 ... P14555 27774123
    24466 5g3n:B (1.8) BS01 CA 3.1.1.4 GO:0004623 ... P14555 27774123
    24467 5g3n:B (1.8) BS02 CA 3.1.1.4 GO:0004623 ... P14555 27774123
    24468 5g4p:A (2.42) BS01 CA ? GO:0003779 ... P84074 28398555
    24469 5g4p:A (2.42) BS02 CA ? GO:0003779 ... P84074 28398555
    24470 5g4p:A (2.42) BS03 CA ? GO:0003779 ... P84074 28398555
    24471 5g4p:E (2.42) BS01 CA ? GO:0003779 ... P84074 28398555
    24472 5g4p:E (2.42) BS02 CA ? GO:0003779 ... P84074 28398555
    24473 5g4p:E (2.42) BS03 CA ? GO:0003779 ... P84074 28398555
    24474 5g56:A (2.64) BS01 CA ? GO:0000272 ... A3DHG6 27531750
    24475 5g56:A (2.64) BS02 CA ? GO:0000272 ... A3DHG6 27531750
    24476 5g56:A (2.64) BS03 CA ? GO:0000272 ... A3DHG6 27531750
    24477 5g58:A (2.54) BS01 CA ? GO:0003779 ... P84074 28398555
    24478 5g58:A (2.54) BS02 CA ? GO:0003779 ... P84074 28398555
    24479 5g58:A (2.54) BS03 CA ? GO:0003779 ... P84074 28398555
    24480 5g58:E (2.54) BS01 CA ? GO:0003779 ... P84074 28398555
    24481 5g58:E (2.54) BS02 CA ? GO:0003779 ... P84074 28398555
    24482 5g58:E (2.54) BS03 CA ? GO:0003779 ... P84074 28398555
    24483 5g5d:B (3.0) BS01 CA ? GO:0000272 ... Q06851 27924829
    24484 5g5d:B (3.0) BS02 CA ? GO:0000272 ... Q06851 27924829
    24485 5g5y:A (1.73) BS01 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24486 5g5y:A (1.73) BS02 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24487 5g5y:B (1.73) BS01 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24488 5g5y:B (1.73) BS02 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24489 5g5z:A (2.01) BS04 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24490 5g5z:A (2.01) BS05 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24491 5g5z:B (2.01) BS04 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24492 5g5z:B (2.01) BS05 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24493 5g5z:C (2.01) BS04 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24494 5g5z:C (2.01) BS05 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24495 5g5z:D (2.01) BS04 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24496 5g5z:D (2.01) BS05 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24497 5g60:A (1.99) BS04 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24498 5g60:A (1.99) BS05 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24499 5g60:B (1.99) BS04 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24500 5g60:B (1.99) BS05 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24501 5g60:C (1.99) BS03 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24502 5g60:C (1.99) BS04 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24503 5g60:D (1.99) BS04 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24504 5g60:D (1.99) BS05 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24505 5g61:A (2.4) BS04 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24506 5g61:A (2.4) BS05 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24507 5g61:B (2.4) BS04 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24508 5g61:B (2.4) BS05 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24509 5g61:C (2.4) BS04 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24510 5g61:C (2.4) BS05 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24511 5g61:D (2.4) BS04 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24512 5g61:D (2.4) BS05 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24513 5g62:A (1.99) BS04 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24514 5g62:A (1.99) BS05 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24515 5g62:B (1.99) BS04 CA ? GO:0005886 ... A0A0H2URD6 27939783
    24516 5g6u:A (1.844) BS03 CA ? N/A Q9UJ71 29272097
    24517 5g6u:B (1.844) BS03 CA ? N/A Q9UJ71 29272097
    24518 5g6u:C (1.844) BS02 CA ? N/A Q9UJ71 29272097
    24519 5g6u:D (1.844) BS04 CA ? N/A Q9UJ71 29272097
    24520 5ggm:A (-1.00) BS01 CA ? GO:0000086 ... P0DP23 N/A
    24521 5ggm:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23 N/A
    24522 5ggm:A (-1.00) BS03 CA ? GO:0000086 ... P0DP23 N/A
    24523 5gh0:A (2.3) BS03 CA 1.11.1.7 GO:0004601 ... P80025 28653416
    24524 5gib:A (2.697) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    24525 5gib:B (2.697) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    24526 5gjw:F (3.9) BS01 CA ? N/A P13806 27580036
    24527 5gkd:A (2.194) BS01 CA ? GO:0046872 ... A0A1S4NYD7 28154171
    24528 5gkd:B (2.194) BS01 CA ? GO:0046872 ... A0A1S4NYD7 28154171
    24529 5gkd:C (2.194) BS01 CA ? GO:0046872 ... A0A1S4NYD7 28154171
    24530 5gkd:D (2.194) BS01 CA ? GO:0046872 ... A0A1S4NYD7 28154171
    24531 5gkq:A (2.565) BS03 CA ? GO:0046872 ... A0A1S4NYD8 28154171
    24532 5gkq:B (2.565) BS01 CA ? GO:0046872 ... A0A1S4NYD8 28154171
    24533 5gl2:A (2.03) BS01 CA ? GO:0006536 ... B6YTD8 27907125
    24534 5gl2:B (2.03) BS01 CA ? GO:0006536 ... B6YTD8 27907125
    24535 5gl2:C (2.03) BS01 CA ? GO:0006536 ... B6YTD8 27907125
    24536 5gl2:D (2.03) BS01 CA ? GO:0006536 ... B6YTD8 27907125
    24537 5gl2:E (2.03) BS01 CA ? GO:0006536 ... B6YTD8 27907125
    24538 5gl2:F (2.03) BS01 CA ? GO:0006536 ... B6YTD8 27907125
    24539 5gl8:B (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P35835 N/A
    24540 5gl8:B (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P35835 N/A
    24541 5gls:A (1.93) BS01 CA 1.11.1.7 GO:0004601 ... P80025 27986533
    24542 5gn8:A (2.805) BS01 CA 1.16.3.1 GO:0004322 ... P02794 27934076
    24543 5gn8:B (2.805) BS01 CA 1.16.3.1 GO:0006826 ... P02794 27934076
    24544 5gnf:A (1.5) BS01 CA ? GO:0046872 ... L7P7R7 27585537
    24545 5gnf:B (1.5) BS01 CA ? GO:0046872 ... L7P7R7 27585537
    24546 5gon:A (2.48) BS02 CA 3.6.5.- GO:0000226 ... P81947 27805821
    24547 5gqc:B (2.36) BS01 CA 3.2.1.140 N/A A0A024QYS6 28392148
    24548 5gqc:C (2.36) BS01 CA 3.2.1.140 N/A A0A024QYS6 28392148
    24549 5gqc:D (2.36) BS01 CA 3.2.1.140 N/A A0A024QYS6 28392148
    24550 5gqc:E (2.36) BS01 CA 3.2.1.140 N/A A0A024QYS6 28392148
    24551 5gqc:F (2.36) BS01 CA 3.2.1.140 N/A A0A024QYS6 28392148
    24552 5gqc:G (2.36) BS01 CA 3.2.1.140 N/A A0A024QYS6 28392148
    24553 5gqc:H (2.36) BS01 CA 3.2.1.140 N/A A0A024QYS6 28392148
    24554 5gqf:A (1.82) BS02 CA 3.2.1.140 N/A A0A024QYS6 28392148
    24555 5gqf:B (1.82) BS02 CA 3.2.1.140 N/A A0A024QYS6 28392148
    24556 5gqg:A (2.7) BS02 CA 3.2.1.140 N/A A0A024QYS6 28392148
    24557 5gqg:B (2.7) BS02 CA 3.2.1.140 N/A A0A024QYS6 28392148
    24558 5gqo:A (2.5) BS01 CA ? GO:0003677 ... A0R1C4 27659385
    24559 5gqq:C (2.2) BS01 CA ? GO:0005509 ... O75340 27784779
    24560 5gqq:C (2.2) BS02 CA ? GO:0005509 ... O75340 27784779
    24561 5gqq:C (2.2) BS03 CA ? GO:0005509 ... O75340 27784779
    24562 5gqq:D (2.2) BS01 CA ? GO:0005509 ... O75340 27784779
    24563 5gqq:D (2.2) BS02 CA ? GO:0005509 ... O75340 27784779
    24564 5gqq:D (2.2) BS03 CA ? GO:0005509 ... O75340 27784779
    24565 5gth:C (2.5) BS15 CA ? GO:0005737 ... D0VWR7 28219079
    24566 5gth:O (2.5) BS01 CA ? GO:0009523 ... D0VWR2 28219079
    24567 5gth:c (2.5) BS15 CA ? GO:0005737 ... D0VWR7 28219079
    24568 5gth:c (2.5) BS16 CA ? GO:0005737 ... D0VWR7 28219079
    24569 5gth:o (2.5) BS01 CA ? GO:0009523 ... D0VWR2 28219079
    24570 5gti:C (2.5) BS15 CA ? GO:0005737 ... D0VWR7 28219079
    24571 5gti:O (2.5) BS01 CA ? GO:0009523 ... D0VWR2 28219079
    24572 5gti:c (2.5) BS15 CA ? GO:0005737 ... D0VWR7 28219079
    24573 5gti:c (2.5) BS16 CA ? GO:0005737 ... D0VWR7 28219079
    24574 5gti:o (2.5) BS01 CA ? GO:0009523 ... D0VWR2 28219079
    24575 5gtw:A (2.93) BS01 CA 5.4.99.16 GO:0003824 ... I3NX86 N/A
    24576 5gtw:B (2.93) BS01 CA 5.4.99.16 GO:0003824 ... I3NX86 N/A
    24577 5gtw:C (2.93) BS01 CA 5.4.99.16 GO:0003824 ... I3NX86 N/A
    24578 5gtw:D (2.93) BS01 CA 5.4.99.16 GO:0003824 ... I3NX86 N/A
    24579 5gub:A (1.78) BS02 CA ? GO:0046872 ... D1AWE0 28432302
    24580 5gub:B (1.78) BS02 CA ? GO:0046872 ... D1AWE0 28432302
    24581 5gub:C (1.78) BS02 CA ? GO:0046872 ... D1AWE0 28432302
    24582 5guw:A (3.2) BS02 CA ? GO:0005886 ... Q59646 28847930
    24583 5guw:C (3.2) BS02 CA ? GO:0005886 ... Q59646 28847930
    24584 5gux:C (3.3) BS02 CA ? GO:0005886 ... Q59646 28847930
    24585 5gw7:A (2.2) BS03 CA 3.2.1.- GO:0004555 ... P42592 27688023
    24586 5gw7:B (2.2) BS02 CA 3.2.1.- GO:0004555 ... P42592 27688023
    24587 5gx6:A (1.81) BS03 CA ? GO:0046872 ... D1AWE0 28432302
    24588 5gx6:B (1.81) BS03 CA ? GO:0046872 ... D1AWE0 28432302
    24589 5gx6:C (1.81) BS03 CA ? GO:0046872 ... D1AWE0 28432302
    24590 5gx7:A (1.991) BS03 CA ? GO:0046872 ... D1AWE0 28432302
    24591 5gx7:B (1.991) BS03 CA ? GO:0046872 ... D1AWE0 28432302
    24592 5gx7:C (1.991) BS03 CA ? GO:0046872 ... D1AWE0 28432302
    24593 5gx8:A (1.778) BS01 CA ? GO:0046872 ... D1AWE0 28432302
    24594 5gx8:B (1.778) BS02 CA ? GO:0046872 ... D1AWE0 28432302
    24595 5gxp:A (2.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    24596 5gxp:A (2.8) BS02 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    24597 5gxp:A (2.8) BS03 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    24598 5gxp:A (2.8) BS04 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    24599 5gxp:A (2.8) BS05 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    24600 5gxp:A (2.8) BS06 CA 3.4.21.4 GO:0004175 ... P00760 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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