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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    24201 5est:E (2.09) BS02 CA 3.4.21.36 GO:0004252 ... P00772 2611205
    24202 5etk:A (1.09) BS03 CA 2.7.6.3 GO:0000287 ... P26281 27094768
    24203 5etk:A (1.09) BS04 CA 2.7.6.3 GO:0000287 ... P26281 27094768
    24204 5etk:A (1.09) BS05 CA 2.7.6.3 GO:0000287 ... P26281 27094768
    24205 5etk:A (1.09) BS06 CA 2.7.6.3 GO:0000287 ... P26281 27094768
    24206 5etl:A (1.82) BS01 CA 2.7.6.3 GO:0000287 ... P26281 27094768
    24207 5etl:A (1.82) BS02 CA 2.7.6.3 GO:0000287 ... P26281 27094768
    24208 5etl:A (1.82) BS03 CA 2.7.6.3 GO:0000287 ... P26281 27094768
    24209 5etl:B (1.82) BS01 CA 2.7.6.3 GO:0000287 ... P26281 27094768
    24210 5etl:B (1.82) BS02 CA 2.7.6.3 GO:0000287 ... P26281 27094768
    24211 5etl:C (1.82) BS01 CA 2.7.6.3 GO:0000287 ... P26281 27094768
    24212 5etl:C (1.82) BS02 CA 2.7.6.3 GO:0000287 ... P26281 27094768
    24213 5etl:D (1.82) BS02 CA 2.7.6.3 GO:0000287 ... P26281 27094768
    24214 5etl:D (1.82) BS03 CA 2.7.6.3 GO:0000287 ... P26281 27094768
    24215 5etm:A (1.46) BS03 CA 2.7.6.3 GO:0000287 ... P26281 27094768
    24216 5etm:A (1.46) BS04 CA 2.7.6.3 GO:0000287 ... P26281 27094768
    24217 5etn:A (1.4) BS01 CA 2.7.6.3 GO:0000287 ... P26281 27094768
    24218 5etn:A (1.4) BS02 CA 2.7.6.3 GO:0000287 ... P26281 27094768
    24219 5etn:A (1.4) BS03 CA 2.7.6.3 GO:0000287 ... P26281 27094768
    24220 5etn:A (1.4) BS04 CA 2.7.6.3 GO:0000287 ... P26281 27094768
    24221 5eto:A (1.07) BS03 CA 2.7.6.3 GO:0000287 ... P26281 27094768
    24222 5eto:A (1.07) BS04 CA 2.7.6.3 GO:0000287 ... P26281 27094768
    24223 5eto:A (1.07) BS05 CA 2.7.6.3 GO:0000287 ... P26281 27094768
    24224 5etp:A (1.05) BS02 CA 2.7.6.3 GO:0000287 ... P26281 27094768
    24225 5etp:A (1.05) BS03 CA 2.7.6.3 GO:0000287 ... P26281 27094768
    24226 5etp:A (1.05) BS04 CA 2.7.6.3 GO:0000287 ... P26281 27094768
    24227 5etp:A (1.05) BS05 CA 2.7.6.3 GO:0000287 ... P26281 27094768
    24228 5ewe:A (1.66) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 26740629
    24229 5ewe:A (1.66) BS05 CA 2.7.7.7 GO:0003684 ... Q9Y253 26740629
    24230 5ewf:A (1.782) BS03 CA 2.7.7.7 GO:0003684 ... Q9Y253 26740629
    24231 5ewg:A (1.75) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 26740629
    24232 5ex2:B (1.294) BS01 CA 5.2.1.8 GO:0000413 ... C6XJ17 27276069
    24233 5eyg:A (2.2) BS01 CA 3.1.3.25 GO:0000166 ... Q2FVV7 26894675
    24234 5eyg:A (2.2) BS02 CA 3.1.3.25 GO:0000166 ... Q2FVV7 26894675
    24235 5eyg:B (2.2) BS01 CA 3.1.3.25 GO:0000166 ... Q2FVV7 26894675
    24236 5eyg:B (2.2) BS02 CA 3.1.3.25 GO:0000166 ... Q2FVV7 26894675
    24237 5eyh:A (2.5) BS01 CA 3.1.3.25 GO:0000166 ... Q2FVV7 26894675
    24238 5eyh:A (2.5) BS02 CA 3.1.3.25 GO:0000166 ... Q2FVV7 26894675
    24239 5eyh:B (2.5) BS01 CA 3.1.3.25 GO:0000166 ... Q2FVV7 26894675
    24240 5eyh:B (2.5) BS02 CA 3.1.3.25 GO:0000166 ... Q2FVV7 26894675
    24241 5eym:A (2.7) BS02 CA 2.7.12.2 GO:0000165 ... Q02750 27496137
    24242 5eym:B (2.7) BS01 CA 2.7.12.2 GO:0000165 ... Q02750 27496137
    24243 5eyx:A (2.25) BS03 CA ? GO:0005537 ... C0HJX1 26946944
    24244 5eyx:B (2.25) BS03 CA ? GO:0005537 ... C0HJX1 26946944
    24245 5eyy:A (1.902) BS03 CA ? GO:0005537 ... C0HJX1 26946944
    24246 5ezy:A (2.05) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 28585532
    24247 5ezy:C (2.05) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 28585532
    24248 5f09:A (1.85) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 27208881
    24249 5f0e:B (1.74) BS01 CA ? N/A O08795 27462106
    24250 5f0e:B (1.74) BS02 CA ? N/A O08795 27462106
    24251 5f24:A (2.5) BS01 CA 3.1.3.25 GO:0000166 ... Q2FVV7 26894675
    24252 5f24:A (2.5) BS02 CA 3.1.3.25 GO:0000166 ... Q2FVV7 26894675
    24253 5f24:B (2.5) BS01 CA 3.1.3.25 GO:0000166 ... Q2FVV7 26894675
    24254 5f24:B (2.5) BS02 CA 3.1.3.25 GO:0000166 ... Q2FVV7 26894675
    24255 5f2d:A (1.7) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    24256 5f2g:A (1.918) BS02 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    24257 5f2g:B (1.918) BS01 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    24258 5f2g:B (1.918) BS02 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    24259 5f2g:B (1.918) BS03 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    24260 5f2i:A (1.95) BS01 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    24261 5f2i:A (1.95) BS02 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    24262 5f2i:B (1.95) BS01 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    24263 5f2i:B (1.95) BS02 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    24264 5f2i:B (1.95) BS03 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    24265 5f2i:C (1.95) BS01 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    24266 5f2i:D (1.95) BS01 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    24267 5f2i:D (1.95) BS02 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    24268 5f2l:A (1.755) BS02 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    24269 5f2l:B (1.755) BS01 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    24270 5f2l:B (1.755) BS02 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    24271 5f2m:A (1.92) BS02 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    24272 5f2m:B (1.92) BS01 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    24273 5f2m:B (1.92) BS02 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    24274 5f2m:B (1.92) BS03 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    24275 5f2q:A (2.95) BS01 CA ? GO:0005576 ... P83519 N/A
    24276 5f2q:B (2.95) BS01 CA ? GO:0005576 ... P83519 N/A
    24277 5f2q:C (2.95) BS01 CA ? GO:0005576 ... P83519 N/A
    24278 5f2q:D (2.95) BS01 CA ? GO:0005576 ... P83519 N/A
    24279 5f2q:E (2.95) BS01 CA ? GO:0005576 ... P83519 N/A
    24280 5f2q:F (2.95) BS01 CA ? GO:0005576 ... P83519 N/A
    24281 5f2q:G (2.95) BS01 CA ? GO:0005576 ... P83519 N/A
    24282 5f2q:H (2.95) BS01 CA ? GO:0005576 ... P83519 N/A
    24283 5f2q:I (2.95) BS01 CA ? GO:0005576 ... P83519 N/A
    24284 5f2q:J (2.95) BS01 CA ? GO:0005576 ... P83519 N/A
    24285 5f47:A (1.497) BS02 CA ? GO:0008080 ... A0A059WZ16 28756664
    24286 5f47:A (1.497) BS03 CA ? GO:0008080 ... A0A059WZ16 28756664
    24287 5f47:B (1.497) BS01 CA ? GO:0008080 ... A0A059WZ16 28756664
    24288 5f4s:A (1.724) BS02 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    24289 5f4s:B (1.724) BS01 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    24290 5f4s:B (1.724) BS02 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    24291 5f4w:A (1.663) BS02 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    24292 5f4w:C (1.663) BS01 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    24293 5f4w:C (1.663) BS02 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    24294 5f5q:A (2.52) BS01 CA ? GO:0005509 ... C0HJY1 27737777
    24295 5f5q:B (2.52) BS01 CA ? GO:0005509 ... C0HJY1 27737777
    24296 5f6m:A (1.1) BS01 CA 3.4.21.4 GO:0004175 ... P00760 27035972
    24297 5f6t:A (2.201) BS01 CA ? GO:0046872 ... O76764 27050260
    24298 5f6t:A (2.201) BS02 CA ? GO:0046872 ... O76764 27050260
    24299 5f7h:A (2.5) BS01 CA ? N/A Q96H15 N/A
    24300 5f7h:B (2.5) BS01 CA ? N/A Q96H15 N/A
    24301 5f7h:C (2.5) BS01 CA ? N/A Q96H15 N/A
    24302 5f7h:D (2.5) BS01 CA ? N/A Q96H15 N/A
    24303 5f7h:E (2.5) BS01 CA ? N/A Q96H15 N/A
    24304 5f7h:F (2.5) BS01 CA ? N/A Q96H15 N/A
    24305 5f7s:A (2.3) BS01 CA N/A GO:0003824 ... N/A 27819654
    24306 5f7s:B (2.3) BS01 CA N/A GO:0003824 ... N/A 27819654
    24307 5fae:A (1.7) BS01 CA ? GO:0051015 ... P06396 27633054
    24308 5faf:A (1.05) BS01 CA ? GO:0051015 ... P06396 27633054
    24309 5fax:A (2.0) BS01 CA 3.4.21.14 GO:0004252 ... A0A182DWC7 N/A
    24310 5fax:A (2.0) BS02 CA 3.4.21.14 GO:0004252 ... A0A182DWC7 N/A
    24311 5fax:A (2.0) BS03 CA 3.4.21.14 GO:0004252 ... A0A182DWC7 N/A
    24312 5fax:B (2.0) BS01 CA 3.4.21.14 GO:0004252 ... A0A182DWC7 N/A
    24313 5fax:B (2.0) BS02 CA 3.4.21.14 GO:0004252 ... A0A182DWC7 N/A
    24314 5fax:B (2.0) BS03 CA 3.4.21.14 GO:0004252 ... A0A182DWC7 N/A
    24315 5fbb:A (1.75) BS06 CA 3.1.30.1 GO:0003676 ... P24021 28036383
    24316 5fbb:B (1.75) BS06 CA 3.1.30.1 GO:0003676 ... P24021 28036383
    24317 5fbz:A (1.9) BS02 CA 3.4.21.14 GO:0004252 ... A0A182DWC7 N/A
    24318 5fbz:A (1.9) BS03 CA 3.4.21.14 GO:0004252 ... A0A182DWC7 N/A
    24319 5fbz:A (1.9) BS04 CA 3.4.21.14 GO:0004252 ... A0A182DWC7 N/A
    24320 5fbz:C (1.9) BS01 CA 3.4.21.14 GO:0004252 ... A0A182DWC7 N/A
    24321 5fbz:C (1.9) BS02 CA 3.4.21.14 GO:0004252 ... A0A182DWC7 N/A
    24322 5fbz:C (1.9) BS03 CA 3.4.21.14 GO:0004252 ... A0A182DWC7 N/A
    24323 5ff1:A (1.97) BS04 CA 1.11.1.7 GO:0004601 ... A0A452E9Y6 27398304
    24324 5ff1:B (1.97) BS03 CA 1.11.1.7 GO:0004601 ... A0A452E9Y6 27398304
    24325 5ff7:A (2.092) BS03 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    24326 5ff7:A (2.092) BS04 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    24327 5ff7:C (2.092) BS01 CA 4.1.2.40 GO:0003824 ... P63705 N/A
    24328 5ffg:A (2.25) BS01 CA ? GO:0007155 ... P06756 28117447
    24329 5ffg:A (2.25) BS02 CA ? GO:0007155 ... P06756 28117447
    24330 5ffg:A (2.25) BS03 CA ? GO:0007155 ... P06756 28117447
    24331 5ffg:A (2.25) BS04 CA ? GO:0007155 ... P06756 28117447
    24332 5ffg:B (2.25) BS01 CA ? N/A P18564 28117447
    24333 5ffg:B (2.25) BS02 CA ? N/A P18564 28117447
    24334 5ffn:A (1.8) BS01 CA 3.4.21.14 GO:0004252 ... A0A182DWC8 N/A
    24335 5ffn:A (1.8) BS02 CA 3.4.21.14 GO:0004252 ... A0A182DWC8 N/A
    24336 5ffo:A (3.49) BS01 CA ? GO:0007155 ... P06756 28117447
    24337 5ffo:A (3.49) BS02 CA ? GO:0007155 ... P06756 28117447
    24338 5ffo:A (3.49) BS03 CA ? GO:0007155 ... P06756 28117447
    24339 5ffo:A (3.49) BS04 CA ? GO:0007155 ... P06756 28117447
    24340 5ffo:E (3.49) BS01 CA ? GO:0007155 ... P06756 28117447
    24341 5ffo:E (3.49) BS02 CA ? GO:0007155 ... P06756 28117447
    24342 5ffo:E (3.49) BS03 CA ? GO:0007155 ... P06756 28117447
    24343 5ffo:E (3.49) BS04 CA ? GO:0007155 ... P06756 28117447
    24344 5ffr:A (2.2) BS01 CA ? N/A P08427 27324153
    24345 5ffs:A (1.8) BS01 CA ? N/A P08427 27324153
    24346 5fft:A (2.2) BS01 CA ? N/A P08427 27324153
    24347 5fiw:C (1.7) BS02 CA 1.11.2.2 GO:0004601 ... P05164 N/A
    24348 5fiw:D (1.7) BS03 CA 1.11.2.2 GO:0004601 ... P05164 N/A
    24349 5fjs:A (2.6) BS01 CA 3.2.1.45 GO:0004348 ... F6BL85 27115290
    24350 5fjs:B (2.6) BS01 CA 3.2.1.45 GO:0004348 ... F6BL85 27115290
    24351 5fk0:B (3.0) BS01 CA ? GO:0006890 ... P43621 26578768
    24352 5fl0:B (1.95) BS01 CA 3.2.1.169 GO:0005975 ... Q89ZI2 29997861
    24353 5fl1:B (1.95) BS02 CA 3.2.1.169 GO:0005975 ... Q89ZI2 29997861
    24354 5fm9:A (2.92) BS01 CA ? GO:0005509 ... P46531 26996961
    24355 5fm9:A (2.92) BS02 CA ? GO:0005509 ... P46531 26996961
    24356 5fma:A (2.46) BS01 CA ? GO:0005509 ... P46531 26996961
    24357 5fma:A (2.46) BS02 CA ? GO:0005509 ... P46531 26996961
    24358 5fma:B (2.46) BS01 CA ? GO:0005509 ... P46531 26996961
    24359 5fma:B (2.46) BS02 CA ? GO:0005509 ... P46531 26996961
    24360 5fnb:A (1.792) BS01 CA 1.11.1.16 GO:0000302 ... O94753 27118867
    24361 5fnb:A (1.792) BS02 CA 1.11.1.16 GO:0000302 ... O94753 27118867
    24362 5fnb:B (1.792) BS01 CA 1.11.1.16 GO:0000302 ... O94753 27118867
    24363 5fnb:B (1.792) BS02 CA 1.11.1.16 GO:0000302 ... O94753 27118867
    24364 5fne:A (1.499) BS01 CA 1.11.1.16 GO:0000302 ... O94753 27118867
    24365 5fne:A (1.499) BS02 CA 1.11.1.16 GO:0000302 ... O94753 27118867
    24366 5fnv:A (2.61) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 27357539
    24367 5fnv:C (2.61) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 27357539
    24368 5fq4:A (1.9) BS01 CA ? GO:0046872 ... Q8A5H6 28077872
    24369 5fq4:B (1.9) BS01 CA ? GO:0046872 ... Q8A5H6 28077872
    24370 5fq6:B (2.8) BS03 CA ? GO:0009279 ... Q8A5H5 28077872
    24371 5fq6:D (2.8) BS03 CA ? GO:0009279 ... Q8A5H5 28077872
    24372 5fq6:I (2.8) BS03 CA ? GO:0009279 ... Q8A5H5 28077872
    24373 5fq6:M (2.8) BS03 CA ? GO:0009279 ... Q8A5H5 28077872
    24374 5fq8:B (2.75) BS04 CA ? GO:0009279 ... Q8A5H5 28077872
    24375 5fq8:D (2.75) BS04 CA ? GO:0009279 ... Q8A5H5 28077872
    24376 5fql:A (2.3) BS01 CA 3.1.6.13 GO:0004423 ... P22304 28593992
    24377 5fr3:A (1.935) BS01 CA ? GO:0005515 ... P13423 26905391
    24378 5fr3:A (1.935) BS02 CA ? GO:0005515 ... P13423 26905391
    24379 5fre:A (1.9) BS02 CA 3.2.1.18 GO:0004308 ... A0A0H2YQR1 27208171
    24380 5fre:A (1.9) BS03 CA 3.2.1.18 GO:0004308 ... A0A0H2YQR1 27208171
    24381 5fre:A (1.9) BS04 CA 3.2.1.18 GO:0004308 ... A0A0H2YQR1 27208171
    24382 5fre:B (1.9) BS02 CA 3.2.1.18 GO:0004308 ... A0A0H2YQR1 27208171
    24383 5fre:B (1.9) BS03 CA 3.2.1.18 GO:0004308 ... A0A0H2YQR1 27208171
    24384 5fre:B (1.9) BS04 CA 3.2.1.18 GO:0004308 ... A0A0H2YQR1 27208171
    24385 5fre:C (1.9) BS02 CA 3.2.1.18 GO:0004308 ... A0A0H2YQR1 27208171
    24386 5fre:C (1.9) BS03 CA 3.2.1.18 GO:0004308 ... A0A0H2YQR1 27208171
    24387 5fsj:A (1.201) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    24388 5fsj:A (1.201) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    24389 5fsj:A (1.201) BS05 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    24390 5fsj:A (1.201) BS08 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    24391 5fsj:A (1.201) BS09 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    24392 5fsp:A (1.7) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    24393 5fsp:A (1.7) BS05 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    24394 5fsp:A (1.7) BS06 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    24395 5fsp:A (1.7) BS07 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    24396 5fss:A (1.5) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    24397 5fss:A (1.5) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    24398 5fss:A (1.5) BS05 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    24399 5fss:A (1.5) BS06 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    24400 5ftc:A (2.269) BS02 CA N/A GO:0000723 ... N/A 26809678
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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