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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2001 1inc:A (1.94) BS01 CA 3.4.21.36 GO:0004252 ... P00772 3430613
    2002 1inf:A (2.4) BS01 CA 3.2.1.18 GO:0004308 ... P03474 7650674
    2003 1ing:A (2.4) BS01 CA 3.2.1.18 GO:0004308 ... P06820 7650674
    2004 1ing:B (2.4) BS02 CA 3.2.1.18 GO:0004308 ... P06820 7650674
    2005 1inh:A (2.4) BS02 CA 3.2.1.18 GO:0004308 ... P06820 7650674
    2006 1inh:B (2.4) BS04 CA 3.2.1.18 GO:0004308 ... P06820 7650674
    2007 1inv:A (2.4) BS01 CA 3.2.1.18 GO:0004308 ... P03474 7844831
    2008 1inw:A (2.4) BS02 CA 3.2.1.18 GO:0004308 ... P06820 7844831
    2009 1inx:A (2.4) BS01 CA 3.2.1.18 GO:0004308 ... P06820 7844831
    2010 1iny:A (2.4) BS01 CA 3.2.1.18 GO:0004308 ... P03472 7844831
    2011 1iod:A (2.3) BS01 CA ? GO:0005576 ... Q9IAM1 11404471
    2012 1iod:A (2.3) BS02 CA ? GO:0005576 ... Q9IAM1 11404471
    2013 1iod:B (2.3) BS01 CA ? GO:0005576 ... Q9DEF8 11404471
    2014 1iod:G (2.3) BS01 CA 3.4.21.6 GO:0005509 ... P00743 11404471
    2015 1iod:G (2.3) BS02 CA 3.4.21.6 GO:0005509 ... P00743 11404471
    2016 1iod:G (2.3) BS03 CA 3.4.21.6 GO:0005509 ... P00743 11404471
    2017 1iod:G (2.3) BS04 CA 3.4.21.6 GO:0005509 ... P00743 11404471
    2018 1iod:G (2.3) BS05 CA 3.4.21.6 GO:0005509 ... P00743 11404471
    2019 1iod:G (2.3) BS06 CA 3.4.21.6 GO:0005509 ... P00743 11404471
    2020 1iod:G (2.3) BS07 CA 3.4.21.6 GO:0005509 ... P00743 11404471
    2021 1ioe:A (2.9) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    2022 1iq3:A (-1.00) BS01 CA ? GO:0005509 ... Q8NFH8 9928989
    2023 1iq5:A (1.8) BS02 CA ? GO:0005102 ... P0DP33 11545585
    2024 1iq5:A (1.8) BS03 CA ? GO:0005102 ... P0DP33 11545585
    2025 1iq5:A (1.8) BS04 CA ? GO:0005102 ... P0DP33 11545585
    2026 1iq5:A (1.8) BS05 CA ? GO:0005102 ... P0DP33 11545585
    2027 1iqc:A (1.8) BS01 CA 1.11.1.5 GO:0004130 ... P55929 11695895
    2028 1iqc:A (1.8) BS02 CA 1.11.1.5 GO:0004130 ... P55929 11695895
    2029 1iqc:B (1.8) BS01 CA 1.11.1.5 GO:0004130 ... P55929 11695895
    2030 1iqc:C (1.8) BS01 CA 1.11.1.5 GO:0004130 ... P55929 11695895
    2031 1iqc:D (1.8) BS01 CA 1.11.1.5 GO:0004130 ... P55929 11695895
    2032 1iqe:A (2.9) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    2033 1iqf:A (3.2) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    2034 1iqg:A (2.6) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    2035 1iqh:A (3.0) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    2036 1iqi:A (2.9) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    2037 1iqj:A (3.0) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    2038 1iqk:A (3.2) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    2039 1iql:A (2.7) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    2040 1iqm:A (2.6) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    2041 1iqn:A (2.6) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    2042 1irb:A (1.9) BS01 CA 3.1.1.4 GO:0002227 ... P00593 8810924
    2043 1irj:A (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    2044 1irj:A (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    2045 1irj:B (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    2046 1irj:B (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    2047 1irj:C (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    2048 1irj:C (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    2049 1irj:D (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    2050 1irj:D (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    2051 1irj:E (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    2052 1irj:E (2.1) BS03 CA ? GO:0002523 ... P06702 11851337
    2053 1irj:F (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    2054 1irj:F (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    2055 1irj:G (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    2056 1irj:G (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    2057 1irj:H (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    2058 1irj:H (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    2059 1it4:A (-1.00) BS01 CA 3.1.1.4 GO:0004623 ... Q6UV28 11897786
    2060 1itc:A (2.1) BS13 CA 3.2.1.2 GO:0000272 ... P36924 12741813
    2061 1ivb:A (2.4) BS01 CA 3.2.1.18 GO:0004308 ... P03474 7880809
    2062 1ivc:A (2.4) BS01 CA 3.2.1.18 GO:0004308 ... P06820 7880809
    2063 1ivc:B (2.4) BS02 CA 3.2.1.18 GO:0004308 ... P06820 7880809
    2064 1ivd:A (1.9) BS01 CA 3.2.1.18 GO:0004308 ... P06820 7880809
    2065 1ivd:B (1.9) BS02 CA 3.2.1.18 GO:0004308 ... P06820 7880809
    2066 1ive:A (2.4) BS01 CA 3.2.1.18 GO:0004308 ... P06820 7880809
    2067 1ive:B (2.4) BS02 CA 3.2.1.18 GO:0004308 ... P06820 7880809
    2068 1ivf:A (2.4) BS01 CA 3.2.1.18 GO:0004308 ... P06820 7880809
    2069 1ivf:B (2.4) BS02 CA 3.2.1.18 GO:0004308 ... P06820 7880809
    2070 1ivg:A (1.9) BS01 CA 3.2.1.18 GO:0004308 ... P06820 7880809
    2071 1ivg:B (1.9) BS03 CA 3.2.1.18 GO:0004308 ... P06820 7880809
    2072 1iwq:A (2.0) BS02 CA ? GO:0000086 ... P0DP23 12577052
    2073 1iwq:A (2.0) BS03 CA ? GO:0000086 ... P0DP23 12577052
    2074 1iwq:A (2.0) BS04 CA ? GO:0000086 ... P0DP23 12577052
    2075 1iwq:A (2.0) BS05 CA ? GO:0000086 ... P0DP23 12577052
    2076 1ixx:A (2.5) BS01 CA ? GO:0005576 ... P23806 9187649
    2077 1ixx:B (2.5) BS01 CA ? GO:0005509 ... P23807 9187649
    2078 1ixx:C (2.5) BS01 CA ? GO:0005576 ... P23806 9187649
    2079 1ixx:D (2.5) BS01 CA ? GO:0005509 ... P23807 9187649
    2080 1ixx:E (2.5) BS01 CA ? GO:0005576 ... P23806 9187649
    2081 1ixx:F (2.5) BS01 CA ? GO:0005509 ... P23807 9187649
    2082 1iz7:A (1.58) BS01 CA 3.8.1.5 GO:0003824 ... D4Z2G1 12939138
    2083 1iz7:A (1.58) BS02 CA 3.8.1.5 GO:0003824 ... D4Z2G1 12939138
    2084 1iz8:A (2.0) BS01 CA 3.8.1.5 GO:0003824 ... D4Z2G1 12939138
    2085 1iz8:A (2.0) BS02 CA 3.8.1.5 GO:0003824 ... D4Z2G1 12939138
    2086 1izj:A (2.2) BS01 CA 3.2.1.135 GO:0004553 ... Q60053 12860426
    2087 1izj:A (2.2) BS02 CA 3.2.1.135 GO:0004553 ... Q60053 12860426
    2088 1izj:A (2.2) BS03 CA 3.2.1.135 GO:0004553 ... Q60053 12860426
    2089 1izk:A (2.2) BS01 CA 3.2.1.135 GO:0004553 ... Q60053 12860426
    2090 1izk:A (2.2) BS02 CA 3.2.1.135 GO:0004553 ... Q60053 12860426
    2091 1izk:A (2.2) BS03 CA 3.2.1.135 GO:0004553 ... Q60053 12860426
    2092 1j0h:A (1.9) BS01 CA 3.2.1.135 GO:0004553 ... P38940 12547200
    2093 1j0h:B (1.9) BS01 CA 3.2.1.135 GO:0004553 ... P38940 12547200
    2094 1j0m:A (2.3) BS01 CA 4.2.2.12 GO:0003824 ... Q9AQS0 12475987
    2095 1j0n:A (2.4) BS02 CA 4.2.2.12 GO:0003824 ... Q9AQS0 12475987
    2096 1j0y:A (2.1) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    2097 1j0y:B (2.1) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    2098 1j0y:C (2.1) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    2099 1j0y:D (2.1) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    2100 1j0z:A (2.2) BS05 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    2101 1j0z:B (2.2) BS05 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    2102 1j0z:C (2.2) BS05 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    2103 1j0z:D (2.2) BS05 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    2104 1j10:A (2.1) BS05 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    2105 1j10:B (2.1) BS06 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    2106 1j10:C (2.1) BS05 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    2107 1j10:D (2.1) BS06 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    2108 1j11:A (2.0) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    2109 1j11:B (2.0) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    2110 1j11:C (2.0) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    2111 1j11:D (2.0) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    2112 1j12:A (2.1) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    2113 1j12:B (2.1) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    2114 1j12:C (2.1) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    2115 1j12:D (2.1) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    2116 1j14:A (2.4) BS01 CA 3.4.21.4 GO:0004252 ... P00763 12527302
    2117 1j15:A (2.0) BS01 CA 3.4.21.4 GO:0004252 ... P00763 12527302
    2118 1j16:A (1.6) BS01 CA 3.4.21.4 GO:0004252 ... P00763 12527302
    2119 1j17:T (2.0) BS01 CA 3.4.21.4 GO:0004252 ... P00763 12527302
    2120 1j18:A (2.0) BS09 CA 3.2.1.2 GO:0000272 ... P36924 12741813
    2121 1j1a:A (2.2) BS01 CA 3.1.1.4 GO:0004623 ... P14555 12616631
    2122 1j1a:A (2.2) BS02 CA 3.1.1.4 GO:0004623 ... P14555 12616631
    2123 1j1a:B (2.2) BS01 CA 3.1.1.4 GO:0004623 ... P14555 12616631
    2124 1j1a:B (2.2) BS02 CA 3.1.1.4 GO:0004623 ... P14555 12616631
    2125 1j1d:A (2.61) BS01 CA ? GO:0002086 ... P63316 12840750
    2126 1j1d:A (2.61) BS02 CA ? GO:0002086 ... P63316 12840750
    2127 1j1d:A (2.61) BS03 CA ? GO:0002086 ... P63316 12840750
    2128 1j1d:D (2.61) BS01 CA ? GO:0002086 ... P63316 12840750
    2129 1j1d:D (2.61) BS02 CA ? GO:0002086 ... P63316 12840750
    2130 1j1d:D (2.61) BS03 CA ? GO:0002086 ... P63316 12840750
    2131 1j1e:A (3.3) BS01 CA ? GO:0002086 ... P63316 12840750
    2132 1j1e:A (3.3) BS02 CA ? GO:0002086 ... P63316 12840750
    2133 1j1e:A (3.3) BS03 CA ? GO:0002086 ... P63316 12840750
    2134 1j1e:D (3.3) BS01 CA ? GO:0002086 ... P63316 12840750
    2135 1j1e:D (3.3) BS02 CA ? GO:0002086 ... P63316 12840750
    2136 1j1e:D (3.3) BS03 CA ? GO:0002086 ... P63316 12840750
    2137 1j1n:A (1.6) BS05 CA ? GO:0042597 ... Q9KWT5 12486124
    2138 1j1n:B (1.6) BS05 CA ? GO:0042597 ... Q9KWT5 12486124
    2139 1j1t:A (2.0) BS01 CA 4.2.2.3 GO:0046872 ... P84143 N/A
    2140 1j24:A (1.78) BS01 CA ? GO:0003677 ... Q8TZH8 12679022
    2141 1j34:A (1.55) BS01 CA ? GO:0005509 ... Q7LZ71 12695512
    2142 1j34:B (1.55) BS01 CA ? GO:0005509 ... P23807 12695512
    2143 1j34:C (1.55) BS02 CA 3.4.21.22 GO:0005509 ... P00741 12695512
    2144 1j34:C (1.55) BS03 CA 3.4.21.22 GO:0005509 ... P00741 12695512
    2145 1j34:C (1.55) BS04 CA 3.4.21.22 GO:0005509 ... P00741 12695512
    2146 1j34:C (1.55) BS05 CA 3.4.21.22 GO:0005509 ... P00741 12695512
    2147 1j35:A (1.8) BS01 CA ? GO:0005509 ... Q7LZ71 12695512
    2148 1j35:B (1.8) BS01 CA ? GO:0005509 ... P23807 12695512
    2149 1j35:C (1.8) BS01 CA 3.4.21.22 GO:0005509 ... P00741 12695512
    2150 1j35:C (1.8) BS02 CA 3.4.21.22 GO:0005509 ... P00741 12695512
    2151 1j35:C (1.8) BS03 CA 3.4.21.22 GO:0005509 ... P00741 12695512
    2152 1j35:C (1.8) BS04 CA 3.4.21.22 GO:0005509 ... P00741 12695512
    2153 1j35:C (1.8) BS05 CA 3.4.21.22 GO:0005509 ... P00741 12695512
    2154 1j35:C (1.8) BS06 CA 3.4.21.22 GO:0005509 ... P00741 12695512
    2155 1j35:C (1.8) BS07 CA 3.4.21.22 GO:0005509 ... P00741 12695512
    2156 1j3b:A (2.0) BS01 CA 4.1.1.49 GO:0004611 ... Q5SLL5 16239727
    2157 1j3b:B (2.0) BS01 CA 4.1.1.49 GO:0004611 ... Q5SLL5 16239727
    2158 1j55:A (2.0) BS01 CA ? GO:0000287 ... P25815 12507480
    2159 1j55:A (2.0) BS02 CA ? GO:0000287 ... P25815 12507480
    2160 1j5u:A (2.0) BS01 CA ? GO:0008033 ... Q9X0H1 N/A
    2161 1j6z:A (1.54) BS01 CA 3.6.4.- GO:0000287 ... P68135 11474115
    2162 1j6z:A (1.54) BS02 CA 3.6.4.- GO:0000287 ... P68135 11474115
    2163 1j6z:A (1.54) BS03 CA 3.6.4.- GO:0000287 ... P68135 11474115
    2164 1j7o:A (-1.00) BS01 CA ? GO:0005509 ... P0DP23 11685248
    2165 1j7o:A (-1.00) BS02 CA ? GO:0005509 ... P0DP23 11685248
    2166 1j7p:A (-1.00) BS01 CA ? GO:0005509 ... P0DP23 11685248
    2167 1j7p:A (-1.00) BS02 CA ? GO:0005509 ... P0DP23 11685248
    2168 1j83:A (1.7) BS01 CA 3.2.1.4 GO:0008810 ... P94622 11733998
    2169 1j83:B (1.7) BS01 CA 3.2.1.4 GO:0008810 ... P94622 11733998
    2170 1j84:A (2.02) BS05 CA 3.2.1.4 GO:0008810 ... P94622 11733998
    2171 1j8a:A (1.21) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    2172 1j8e:A (1.85) BS01 CA ? N/A Q07954 11735395
    2173 1j9c:H (2.9) BS02 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    2174 1j9k:A (2.1) BS01 CA 3.1.3.5 GO:0000166 ... P96112 11524683
    2175 1j9k:B (2.1) BS01 CA 3.1.3.5 GO:0000166 ... P96112 11524683
    2176 1j9l:A (1.9) BS01 CA 3.1.3.5 GO:0000166 ... P96112 11524683
    2177 1j9l:A (1.9) BS02 CA 3.1.3.5 GO:0000166 ... P96112 11524683
    2178 1j9l:B (1.9) BS01 CA 3.1.3.5 GO:0000166 ... P96112 11524683
    2179 1jae:A (1.65) BS01 CA 3.2.1.1 GO:0003824 ... P56634 9600843
    2180 1jan:A (2.5) BS02 CA 3.4.24.34 GO:0004222 ... P22894 8307185
    2181 1jan:A (2.5) BS03 CA 3.4.24.34 GO:0004222 ... P22894 8307185
    2182 1jao:A (2.4) BS02 CA 3.4.24.34 GO:0004222 ... P22894 7737183
    2183 1jao:A (2.4) BS03 CA 3.4.24.34 GO:0004222 ... P22894 7737183
    2184 1jap:A (1.82) BS02 CA 3.4.24.34 GO:0004222 ... P22894 8137810
    2185 1jap:A (1.82) BS03 CA 3.4.24.34 GO:0004222 ... P22894 8137810
    2186 1jaq:A (2.4) BS01 CA 3.4.24.34 GO:0004222 ... P22894 7737183
    2187 1jaq:A (2.4) BS03 CA 3.4.24.34 GO:0004222 ... P22894 7737183
    2188 1jb0:L (2.5) BS04 CA ? GO:0009522 ... Q8DGB4 11418848
    2189 1jba:A (-1.00) BS01 CA 4.6.1.2 GO:0001750 ... P51177 10383444
    2190 1jba:A (-1.00) BS02 CA 4.6.1.2 GO:0001750 ... P51177 10383444
    2191 1jba:A (-1.00) BS03 CA 4.6.1.2 GO:0001750 ... P51177 10383444
    2192 1jbc:A (1.15) BS02 CA ? GO:0030246 ... P02866 15299577
    2193 1jc2:A (-1.00) BS01 CA ? GO:0005509 ... P02588 11513585
    2194 1jc2:A (-1.00) BS02 CA ? GO:0005509 ... P02588 11513585
    2195 1jc9:A (2.01) BS01 CA ? GO:0005576 ... Q9U8W8 11707569
    2196 1jd7:A (2.25) BS01 CA 3.2.1.1 GO:0003824 ... P29957 12021442
    2197 1jd9:A (2.5) BS01 CA 3.2.1.1 GO:0003824 ... P29957 12021442
    2198 1jda:A (2.2) BS01 CA 3.2.1.60 GO:0004556 ... P13507 9281429
    2199 1jda:A (2.2) BS02 CA 3.2.1.60 GO:0004556 ... P13507 9281429
    2200 1jdc:A (1.9) BS05 CA 3.2.1.60 GO:0004556 ... P13507 9281429

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218