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BioLiP
Download all results in tab-seperated text for 899 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 7q3t:A (1.788) BS01 C8E ? GO:0009279 ... D6QLY0 35816554
    802 7q3t:A (1.788) BS02 C8E ? GO:0009279 ... D6QLY0 35816554
    803 7q3t:A (1.788) BS03 C8E ? GO:0009279 ... D6QLY0 35816554
    804 7q3t:A (1.788) BS04 C8E ? GO:0009279 ... D6QLY0 35816554
    805 7q3t:A (1.788) BS05 C8E ? GO:0009279 ... D6QLY0 35816554
    806 7q3t:B (1.788) BS01 C8E ? GO:0009279 ... D6QLY0 35816554
    807 7q3t:B (1.788) BS02 C8E ? GO:0009279 ... D6QLY0 35816554
    808 7q3t:B (1.788) BS03 C8E ? GO:0009279 ... D6QLY0 35816554
    809 7q3t:B (1.788) BS04 C8E ? GO:0009279 ... D6QLY0 35816554
    810 7q3t:B (1.788) BS05 C8E ? GO:0009279 ... D6QLY0 35816554
    811 7q3t:B (1.788) BS06 C8E ? GO:0009279 ... D6QLY0 35816554
    812 7q3t:B (1.788) BS07 C8E ? GO:0009279 ... D6QLY0 35816554
    813 7q3t:C (1.788) BS01 C8E ? GO:0009279 ... D6QLY0 35816554
    814 7q3t:C (1.788) BS02 C8E ? GO:0009279 ... D6QLY0 35816554
    815 7q3t:C (1.788) BS03 C8E ? GO:0009279 ... D6QLY0 35816554
    816 7q3t:C (1.788) BS04 C8E ? GO:0009279 ... D6QLY0 35816554
    817 7q3t:D (1.788) BS01 C8E ? GO:0009279 ... D6QLY0 35816554
    818 7q3t:D (1.788) BS02 C8E ? GO:0009279 ... D6QLY0 35816554
    819 7q3t:D (1.788) BS03 C8E ? GO:0009279 ... D6QLY0 35816554
    820 7q3t:E (1.788) BS01 C8E ? GO:0009279 ... D6QLY0 35816554
    821 7q3t:E (1.788) BS02 C8E ? GO:0009279 ... D6QLY0 35816554
    822 7q3t:E (1.788) BS03 C8E ? GO:0009279 ... D6QLY0 35816554
    823 7q3t:E (1.788) BS04 C8E ? GO:0009279 ... D6QLY0 35816554
    824 7q3t:F (1.788) BS01 C8E ? GO:0009279 ... D6QLY0 35816554
    825 7q3t:F (1.788) BS02 C8E ? GO:0009279 ... D6QLY0 35816554
    826 7vu0:A (1.85) BS03 C8E ? GO:0006811 ... P75733 N/A
    827 7vu0:A (1.85) BS04 C8E ? GO:0006811 ... P75733 N/A
    828 7vu0:A (1.85) BS05 C8E ? GO:0006811 ... P75733 N/A
    829 7vu0:A (1.85) BS06 C8E ? GO:0006811 ... P75733 N/A
    830 7vu0:A (1.85) BS07 C8E ? GO:0006811 ... P75733 N/A
    831 7vu0:A (1.85) BS08 C8E ? GO:0006811 ... P75733 N/A
    832 7vu0:A (1.85) BS09 C8E ? GO:0006811 ... P75733 N/A
    833 7vu0:A (1.85) BS10 C8E ? GO:0006811 ... P75733 N/A
    834 7vu0:A (1.85) BS11 C8E ? GO:0006811 ... P75733 N/A
    835 7vu0:A (1.85) BS12 C8E ? GO:0006811 ... P75733 N/A
    836 7vu0:A (1.85) BS13 C8E ? GO:0006811 ... P75733 N/A
    837 7vu0:B (1.85) BS02 C8E ? GO:0006811 ... P75733 N/A
    838 7vu0:B (1.85) BS03 C8E ? GO:0006811 ... P75733 N/A
    839 7vu0:B (1.85) BS04 C8E ? GO:0006811 ... P75733 N/A
    840 7vu0:B (1.85) BS05 C8E ? GO:0006811 ... P75733 N/A
    841 7vu0:B (1.85) BS06 C8E ? GO:0006811 ... P75733 N/A
    842 7vu0:B (1.85) BS07 C8E ? GO:0006811 ... P75733 N/A
    843 7vu0:B (1.85) BS08 C8E ? GO:0006811 ... P75733 N/A
    844 7vu0:B (1.85) BS09 C8E ? GO:0006811 ... P75733 N/A
    845 7vu0:B (1.85) BS10 C8E ? GO:0006811 ... P75733 N/A
    846 7vu0:B (1.85) BS11 C8E ? GO:0006811 ... P75733 N/A
    847 7vu0:B (1.85) BS12 C8E ? GO:0006811 ... P75733 N/A
    848 7vu1:A (1.9) BS04 C8E ? GO:0006811 ... P75733 N/A
    849 7vu1:A (1.9) BS05 C8E ? GO:0006811 ... P75733 N/A
    850 7vu1:A (1.9) BS06 C8E ? GO:0006811 ... P75733 N/A
    851 7vu1:A (1.9) BS07 C8E ? GO:0006811 ... P75733 N/A
    852 7vu1:B (1.9) BS04 C8E ? GO:0006811 ... P75733 N/A
    853 7vu1:B (1.9) BS05 C8E ? GO:0006811 ... P75733 N/A
    854 7vu1:B (1.9) BS06 C8E ? GO:0006811 ... P75733 N/A
    855 7vu2:A (1.85) BS03 C8E N/A GO:0016020 ... N/A N/A
    856 7vu2:A (1.85) BS04 C8E N/A GO:0016020 ... N/A N/A
    857 7vu2:A (1.85) BS05 C8E N/A GO:0016020 ... N/A N/A
    858 7vu2:A (1.85) BS06 C8E N/A GO:0016020 ... N/A N/A
    859 7vu2:A (1.85) BS07 C8E N/A GO:0016020 ... N/A N/A
    860 7vu2:A (1.85) BS08 C8E N/A GO:0016020 ... N/A N/A
    861 7vu2:A (1.85) BS09 C8E N/A GO:0016020 ... N/A N/A
    862 7vu3:A (2.7) BS01 C8E N/A GO:0016020 ... N/A N/A
    863 7x5p:A (3.4) BS02 C8E ? GO:0006811 ... L0RVU0 N/A
    864 7x5p:A (3.4) BS03 C8E ? GO:0006811 ... L0RVU0 N/A
    865 7x5p:A (3.4) BS04 C8E ? GO:0006811 ... L0RVU0 N/A
    866 7x5p:A (3.4) BS05 C8E ? GO:0006811 ... L0RVU0 N/A
    867 7x5p:B (3.4) BS02 C8E ? GO:0006811 ... L0RVU0 N/A
    868 7x5p:C (3.4) BS01 C8E ? GO:0006811 ... L0RVU0 N/A
    869 7x5p:D (3.4) BS02 C8E ? GO:0006811 ... L0RVU0 N/A
    870 7x5p:D (3.4) BS03 C8E ? GO:0006811 ... L0RVU0 N/A
    871 7x5p:E (3.4) BS01 C8E ? GO:0006811 ... L0RVU0 N/A
    872 7x5p:F (3.4) BS02 C8E ? GO:0006811 ... L0RVU0 N/A
    873 7x5p:F (3.4) BS03 C8E ? GO:0006811 ... L0RVU0 N/A
    874 7x5p:F (3.4) BS04 C8E ? GO:0006811 ... L0RVU0 N/A
    875 7x5q:A (2.7) BS01 C8E ? GO:0006811 ... L0RVU0 N/A
    876 7x5q:D (2.7) BS01 C8E ? GO:0006811 ... L0RVU0 N/A
    877 8jto:A (2.25) BS01 C8E N/A GO:0006811 ... A0A069BCC8 N/A
    878 8jto:A (2.25) BS02 C8E N/A GO:0006811 ... A0A069BCC8 N/A
    879 8juq:A (2.21) BS01 C8E N/A GO:0006811 ... L0RVU0 N/A
    880 8juq:A (2.21) BS02 C8E N/A GO:0006811 ... L0RVU0 N/A
    881 8juq:B (2.21) BS01 C8E N/A GO:0006811 ... L0RVU0 N/A
    882 8juq:B (2.21) BS02 C8E N/A GO:0006811 ... L0RVU0 N/A
    883 8juq:C (2.21) BS01 C8E N/A GO:0006811 ... L0RVU0 N/A
    884 8juq:C (2.21) BS02 C8E N/A GO:0006811 ... L0RVU0 N/A
    885 8juq:C (2.21) BS03 C8E N/A GO:0006811 ... L0RVU0 N/A
    886 8juq:G (2.21) BS01 C8E N/A GO:0006811 ... L0RVU0 N/A
    887 8juq:H (2.21) BS01 C8E N/A GO:0006811 ... L0RVU0 N/A
    888 8jur:A (2.92) BS01 C8E N/A GO:0006811 ... L0RVU0 N/A
    889 8jur:B (2.92) BS01 C8E N/A GO:0006811 ... L0RVU0 N/A
    890 8prn:A (2.3) BS01 C8E ? GO:0006811 ... P39767 9684893
    891 8pyz:C (2.7) BS01 C8E ? GO:0006811 ... D6QLY1 37828292
    892 8pyz:E (2.7) BS01 C8E ? GO:0006811 ... D6QLY1 37828292
    893 8pyz:F (2.7) BS01 C8E ? GO:0006811 ... D6QLY1 37828292
    894 8pyz:F (2.7) BS02 C8E ? GO:0006811 ... D6QLY1 37828292
    895 8q2o:A (1.7) BS14 C8E ? GO:0009279 ... P18895 N/A
    896 8q2o:A (1.7) BS16 C8E ? GO:0009279 ... P18895 N/A
    897 8us1:A (2.65) BS01 C8E N/A GO:0009279 ... Q9I0U1 38959031
    898 8us1:A (2.65) BS02 C8E N/A GO:0009279 ... Q9I0U1 38959031
    899 8us3:A (3.1) BS01 C8E N/A GO:0009279 ... Q9I0U1 38959031
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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