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BioLiP
Download all results in tab-seperated text for 899 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1bh3:A (2.19) BS01 C8E ? GO:0006811 ... P39767 9684893
    2 1bxw:A (2.5) BS01 C8E ? GO:0009279 ... P0A910 9808047
    3 1eth:A (2.8) BS03 C8E 3.1.1.3 GO:0004806 ... P00591 8663362
    4 1eth:A (2.8) BS04 C8E 3.1.1.3 GO:0004806 ... P00591 8663362
    5 1eth:C (2.8) BS03 C8E 3.1.1.3 GO:0004806 ... P00591 8663362
    6 1eth:C (2.8) BS04 C8E 3.1.1.3 GO:0004806 ... P00591 8663362
    7 1gfm:A (3.5) BS01 C8E ? GO:0001530 ... P02931 8702816
    8 1gfm:A (3.5) BS02 C8E ? GO:0001530 ... P02931 8702816
    9 1gfn:A (3.1) BS01 C8E ? GO:0001530 ... P02931 8702816
    10 1gfn:A (3.1) BS02 C8E ? GO:0001530 ... P02931 8702816
    11 1gfo:A (3.3) BS01 C8E ? GO:0001530 ... P02931 8702816
    12 1gfo:A (3.3) BS02 C8E ? GO:0001530 ... P02931 8702816
    13 1gfp:A (2.7) BS01 C8E ? GO:0001530 ... P02931 8702816
    14 1gfp:A (2.7) BS02 C8E ? GO:0001530 ... P02931 8702816
    15 1gfq:A (2.8) BS01 C8E ? GO:0001530 ... P02931 8702816
    16 1gsz:B (2.8) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12031670
    17 1gsz:C (2.8) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12031670
    18 1gzm:A (2.65) BS02 C8E ? GO:0000139 ... P02699 15491621
    19 1gzm:A (2.65) BS03 C8E ? GO:0000139 ... P02699 15491621
    20 1gzm:A (2.65) BS04 C8E ? GO:0000139 ... P02699 15491621
    21 1gzm:B (2.65) BS02 C8E ? GO:0000139 ... P02699 15491621
    22 1gzm:B (2.65) BS03 C8E ? GO:0000139 ... P02699 15491621
    23 1gzm:B (2.65) BS04 C8E ? GO:0000139 ... P02699 15491621
    24 1h35:A (2.8) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    25 1h35:B (2.8) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    26 1h35:C (2.8) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    27 1h36:A (2.8) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    28 1h36:C (2.8) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    29 1h37:A (2.8) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    30 1h37:B (2.8) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    31 1h37:C (2.8) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    32 1h39:A (2.8) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    33 1h39:B (2.8) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    34 1h3a:A (2.85) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    35 1h3a:B (2.85) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    36 1h3a:C (2.85) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    37 1h3b:A (2.8) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    38 1h3b:B (2.8) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    39 1h3b:C (2.8) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    40 1h3c:A (2.9) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    41 1h3c:B (2.9) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    42 1h3c:C (2.9) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    43 1mpf:A (3.0) BS01 C8E ? GO:0001530 ... P02931 7524100
    44 1nqe:A (2.0) BS01 C8E ? GO:0005509 ... P06129 12652322
    45 1nqe:A (2.0) BS02 C8E ? GO:0005509 ... P06129 12652322
    46 1nqe:A (2.0) BS03 C8E ? GO:0005509 ... P06129 12652322
    47 1nqe:A (2.0) BS04 C8E ? GO:0005509 ... P06129 12652322
    48 1nqf:A (2.7) BS01 C8E ? GO:0005509 ... P06129 12652322
    49 1nqf:A (2.7) BS02 C8E ? GO:0005509 ... P06129 12652322
    50 1nqf:A (2.7) BS03 C8E ? GO:0005509 ... P06129 12652322
    51 1nqf:A (2.7) BS04 C8E ? GO:0005509 ... P06129 12652322
    52 1nqf:A (2.7) BS05 C8E ? GO:0005509 ... P06129 12652322
    53 1nqg:A (3.31) BS04 C8E ? GO:0005509 ... P06129 12652322
    54 1nqg:A (3.31) BS05 C8E ? GO:0005509 ... P06129 12652322
    55 1nqg:A (3.31) BS06 C8E ? GO:0005509 ... P06129 12652322
    56 1nqg:A (3.31) BS07 C8E ? GO:0005509 ... P06129 12652322
    57 1nqh:A (3.1) BS04 C8E ? GO:0005509 ... P06129 12652322
    58 1nqh:A (3.1) BS05 C8E ? GO:0005509 ... P06129 12652322
    59 1nqh:A (3.1) BS06 C8E ? GO:0005509 ... P06129 12652322
    60 1nqh:A (3.1) BS07 C8E ? GO:0005509 ... P06129 12652322
    61 1nqh:A (3.1) BS08 C8E ? GO:0005509 ... P06129 12652322
    62 1o6h:A (2.8) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    63 1o6h:B (2.8) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    64 1o6h:C (2.8) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    65 1o6q:A (2.8) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    66 1o6q:B (2.8) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    67 1o6q:C (2.8) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    68 1o6r:A (2.7) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    69 1o6r:B (2.7) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    70 1o6r:C (2.7) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    71 1o79:B (2.8) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    72 1o79:C (2.8) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    73 1prn:A (1.96) BS01 C8E ? GO:0006811 ... P39767 7525973
    74 1prn:A (1.96) BS02 C8E ? GO:0006811 ... P39767 7525973
    75 1qj8:A (1.9) BS01 C8E ? GO:0005515 ... P0A917 10545325
    76 1qjp:A (1.65) BS01 C8E ? GO:0009279 ... P0A910 10764596
    77 1qjp:A (1.65) BS02 C8E ? GO:0009279 ... P0A910 10764596
    78 1qjp:A (1.65) BS03 C8E ? GO:0009279 ... P0A910 10764596
    79 1qjp:A (1.65) BS04 C8E ? GO:0009279 ... P0A910 10764596
    80 1qjp:A (1.65) BS05 C8E ? GO:0009279 ... P0A910 10764596
    81 1qjp:A (1.65) BS06 C8E ? GO:0009279 ... P0A910 10764596
    82 1t16:A (2.6) BS04 C8E ? GO:0006869 ... P10384 15178802
    83 1t16:B (2.6) BS02 C8E ? GO:0006869 ... P10384 15178802
    84 1t16:B (2.6) BS03 C8E ? GO:0006869 ... P10384 15178802
    85 1ump:A (2.13) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 15113001
    86 1ump:B (2.13) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 15113001
    87 1ump:B (2.13) BS02 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 15113001
    88 1ump:C (2.13) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 15113001
    89 1ump:C (2.13) BS02 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 15113001
    90 2bix:A (2.68) BS01 C8E 1.13.11.75 GO:0010436 ... P74334 15821095
    91 2bix:B (2.68) BS01 C8E 1.13.11.75 GO:0010436 ... P74334 15821095
    92 2f1c:X (2.3) BS01 C8E ? GO:0006811 ... P76045 16797588
    93 2f1c:X (2.3) BS02 C8E ? GO:0006811 ... P76045 16797588
    94 2f1t:A (3.0) BS01 C8E ? GO:0005515 ... P0A915 16414958
    95 2f1t:A (3.0) BS02 C8E ? GO:0005515 ... P0A915 16414958
    96 2f1t:B (3.0) BS01 C8E ? GO:0005515 ... P0A915 16414958
    97 2f1t:B (3.0) BS02 C8E ? GO:0005515 ... P0A915 16414958
    98 2f1t:C (3.0) BS01 C8E ? GO:0005515 ... P0A915 16414958
    99 2gr7:B (2.3) BS01 C8E ? N/A Q48152 16688217
    100 2gr7:C (2.3) BS01 C8E ? N/A Q48152 16688217
    101 2gr7:D (2.3) BS01 C8E ? N/A Q48152 16688217
    102 2gr7:E (2.3) BS01 C8E ? N/A Q48152 16688217
    103 2gr7:E (2.3) BS02 C8E ? N/A Q48152 16688217
    104 2o4v:A (1.94) BS03 C8E ? GO:0006811 ... P05695 17187075
    105 2o4v:B (1.94) BS02 C8E ? GO:0006811 ... P05695 17187075
    106 2odj:A (2.9) BS01 C8E 3.4.21.- GO:0006508 ... P32722 17952093
    107 2odj:A (2.9) BS02 C8E 3.4.21.- GO:0006508 ... P32722 17952093
    108 2odj:A (2.9) BS03 C8E 3.4.21.- GO:0006508 ... P32722 17952093
    109 2odj:A (2.9) BS04 C8E 3.4.21.- GO:0006508 ... P32722 17952093
    110 2odj:A (2.9) BS05 C8E 3.4.21.- GO:0006508 ... P32722 17952093
    111 2odj:B (2.9) BS01 C8E 3.4.21.- GO:0006508 ... P32722 17952093
    112 2odj:B (2.9) BS02 C8E 3.4.21.- GO:0006508 ... P32722 17952093
    113 2odj:B (2.9) BS03 C8E 3.4.21.- GO:0006508 ... P32722 17952093
    114 2odj:B (2.9) BS04 C8E 3.4.21.- GO:0006508 ... P32722 17952093
    115 2omf:A (2.4) BS01 C8E ? GO:0001530 ... P02931 N/A
    116 2por:A (1.8) BS04 C8E ? GO:0006811 ... P31243 1328651
    117 2prn:A (1.93) BS02 C8E ? GO:0006811 ... P39767 9684893
    118 2prn:A (1.93) BS03 C8E ? GO:0006811 ... P39767 9684893
    119 2qtk:A (2.8) BS01 C8E ? GO:0015288 ... Q9HUR5 18611376
    120 2qtk:A (2.8) BS02 C8E ? GO:0015288 ... Q9HUR5 18611376
    121 2qtk:A (2.8) BS03 C8E ? GO:0015288 ... Q9HUR5 18611376
    122 2qtk:A (2.8) BS04 C8E ? GO:0015288 ... Q9HUR5 18611376
    123 2qtk:A (2.8) BS05 C8E ? GO:0015288 ... Q9HUR5 18611376
    124 2qtk:A (2.8) BS06 C8E ? GO:0015288 ... Q9HUR5 18611376
    125 2qtk:B (2.8) BS01 C8E ? GO:0015288 ... Q9HUR5 18611376
    126 2qtk:B (2.8) BS02 C8E ? GO:0015288 ... Q9HUR5 18611376
    127 2qtk:B (2.8) BS03 C8E ? GO:0015288 ... Q9HUR5 18611376
    128 2qtk:B (2.8) BS04 C8E ? GO:0015288 ... Q9HUR5 18611376
    129 2qtk:B (2.8) BS05 C8E ? GO:0015288 ... Q9HUR5 18611376
    130 2qtk:B (2.8) BS06 C8E ? GO:0015288 ... Q9HUR5 18611376
    131 2qtk:B (2.8) BS07 C8E ? GO:0015288 ... Q9HUR5 18611376
    132 2r8a:A (3.0) BS01 C8E ? GO:0006869 ... P10384 21593406
    133 2r8a:A (3.0) BS02 C8E ? GO:0006869 ... P10384 21593406
    134 2r8a:B (3.0) BS01 C8E ? GO:0006869 ... P10384 21593406
    135 2r8a:B (3.0) BS02 C8E ? GO:0006869 ... P10384 21593406
    136 2r8a:B (3.0) BS03 C8E ? GO:0006869 ... P10384 21593406
    137 2sqc:A (2.0) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 9931258
    138 2sqc:A (2.0) BS02 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 9931258
    139 2sqc:A (2.0) BS03 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 9931258
    140 2sqc:A (2.0) BS04 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 9931258
    141 2sqc:B (2.0) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 9931258
    142 2sqc:B (2.0) BS02 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 9931258
    143 2sqc:B (2.0) BS03 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 9931258
    144 2sqc:B (2.0) BS04 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 9931258
    145 2vqi:B (3.2) BS01 C8E ? GO:0009297 ... P07110 18485872
    146 2wvp:A (2.4) BS02 C8E ? GO:0006811 ... P76045 20378361
    147 2wvp:A (2.4) BS03 C8E ? GO:0006811 ... P76045 20378361
    148 2x27:X (2.4) BS01 C8E ? GO:0009279 ... Q9HWW1 21124774
    149 2x27:X (2.4) BS02 C8E ? GO:0009279 ... Q9HWW1 21124774
    150 2x27:X (2.4) BS03 C8E ? GO:0009279 ... Q9HWW1 21124774
    151 2x4m:A (2.55) BS01 C8E 3.4.23.48 GO:0004175 ... P17811 20637417
    152 2x4m:A (2.55) BS02 C8E 3.4.23.48 GO:0004175 ... P17811 20637417
    153 2x4m:A (2.55) BS03 C8E 3.4.23.48 GO:0004175 ... P17811 20637417
    154 2x4m:A (2.55) BS04 C8E 3.4.23.48 GO:0004175 ... P17811 20637417
    155 2x4m:B (2.55) BS01 C8E 3.4.23.48 GO:0004175 ... P17811 20637417
    156 2x4m:B (2.55) BS02 C8E 3.4.23.48 GO:0004175 ... P17811 20637417
    157 2x4m:B (2.55) BS03 C8E 3.4.23.48 GO:0004175 ... P17811 20637417
    158 2x4m:C (2.55) BS01 C8E 3.4.23.48 GO:0004175 ... P17811 20637417
    159 2x4m:C (2.55) BS02 C8E 3.4.23.48 GO:0004175 ... P17811 20637417
    160 2x4m:C (2.55) BS03 C8E 3.4.23.48 GO:0004175 ... P17811 20637417
    161 2x4m:D (2.55) BS01 C8E 3.4.23.48 GO:0004175 ... P17811 20637417
    162 2x4m:D (2.55) BS02 C8E 3.4.23.48 GO:0004175 ... P17811 20637417
    163 2x4m:D (2.55) BS03 C8E 3.4.23.48 GO:0004175 ... P17811 20637417
    164 2x55:A (1.85) BS01 C8E 3.4.23.48 GO:0004175 ... P17811 20637417
    165 2x55:A (1.85) BS02 C8E 3.4.23.48 GO:0004175 ... P17811 20637417
    166 2x55:A (1.85) BS03 C8E 3.4.23.48 GO:0004175 ... P17811 20637417
    167 2x55:A (1.85) BS04 C8E 3.4.23.48 GO:0004175 ... P17811 20637417
    168 2x55:A (1.85) BS05 C8E 3.4.23.48 GO:0004175 ... P17811 20637417
    169 2x55:A (1.85) BS06 C8E 3.4.23.48 GO:0004175 ... P17811 20637417
    170 2x56:A (2.3) BS01 C8E 3.4.23.48 GO:0004175 ... P17811 20637417
    171 2x56:A (2.3) BS02 C8E 3.4.23.48 GO:0004175 ... P17811 20637417
    172 2x56:A (2.3) BS03 C8E 3.4.23.48 GO:0004175 ... P17811 20637417
    173 2x56:A (2.3) BS04 C8E 3.4.23.48 GO:0004175 ... P17811 20637417
    174 2x56:A (2.3) BS05 C8E 3.4.23.48 GO:0004175 ... P17811 20637417
    175 2x56:A (2.3) BS06 C8E 3.4.23.48 GO:0004175 ... P17811 20637417
    176 2x56:A (2.3) BS07 C8E 3.4.23.48 GO:0004175 ... P17811 20637417
    177 2xe5:B (2.28) BS02 C8E ? GO:0006811 ... Q9K597 22053181
    178 2xe5:D (2.28) BS01 C8E ? GO:0006811 ... Q9K597 22053181
    179 2y0h:A (2.2) BS01 C8E ? GO:0015288 ... Q9HWP4 N/A
    180 2y0h:A (2.2) BS02 C8E ? GO:0015288 ... Q9HWP4 N/A
    181 2y0h:A (2.2) BS03 C8E ? GO:0015288 ... Q9HWP4 N/A
    182 2y0h:A (2.2) BS04 C8E ? GO:0015288 ... Q9HWP4 N/A
    183 2y0k:A (2.295) BS01 C8E ? GO:0015288 ... Q9I202 N/A
    184 2y0k:A (2.295) BS02 C8E ? GO:0015288 ... Q9I202 N/A
    185 2y2x:A (1.65) BS01 C8E ? GO:0015288 ... Q9HUR5 N/A
    186 2y2x:A (1.65) BS02 C8E ? GO:0015288 ... Q9HUR5 N/A
    187 2y2x:A (1.65) BS03 C8E ? GO:0015288 ... Q9HUR5 N/A
    188 2y2x:A (1.65) BS04 C8E ? GO:0015288 ... Q9HUR5 N/A
    189 2y2x:A (1.65) BS05 C8E ? GO:0015288 ... Q9HUR5 N/A
    190 2y2x:A (1.65) BS06 C8E ? GO:0015288 ... Q9HUR5 N/A
    191 2y2x:A (1.65) BS07 C8E ? GO:0015288 ... Q9HUR5 N/A
    192 2y2x:B (1.65) BS01 C8E ? GO:0015288 ... Q9HUR5 N/A
    193 2y2x:B (1.65) BS02 C8E ? GO:0015288 ... Q9HUR5 N/A
    194 2y2x:B (1.65) BS03 C8E ? GO:0015288 ... Q9HUR5 N/A
    195 2y2x:B (1.65) BS04 C8E ? GO:0015288 ... Q9HUR5 N/A
    196 2y2x:B (1.65) BS05 C8E ? GO:0015288 ... Q9HUR5 N/A
    197 2y2x:B (1.65) BS06 C8E ? GO:0015288 ... Q9HUR5 N/A
    198 2zfg:A (1.59) BS01 C8E ? GO:0001530 ... P02931 18636093
    199 3bry:A (3.2) BS01 C8E ? GO:0015483 ... Q9RBW8 18559855
    200 3bry:B (3.2) BS01 C8E ? GO:0015483 ... Q9RBW8 18559855
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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