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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2r5c:B (1.96) BS01 C6P 2.6.1.-
    2.6.1.63
    2.6.1.7    		 GO:0005737 ... Q17CS8 18186649
    2 3vc3:A (1.766) BS01 C6P 2.5.1.47
    4.4.1.9    		 GO:0004124 ... I1L6I6 22739827
    3 3vc3:B (1.766) BS01 C6P 2.5.1.47
    4.4.1.9    		 GO:0004124 ... I1L6I6 22739827
    4 3vc3:C (1.766) BS01 C6P 2.5.1.47
    4.4.1.9    		 GO:0004124 ... I1L6I6 22739827
    5 3vc3:D (1.766) BS01 C6P 2.5.1.47
    4.4.1.9    		 GO:0004124 ... I1L6I6 22739827
    6 3vc3:E (1.766) BS01 C6P 2.5.1.47
    4.4.1.9    		 GO:0004124 ... I1L6I6 22739827
    7 3vc3:F (1.766) BS01 C6P 2.5.1.47
    4.4.1.9    		 GO:0004124 ... I1L6I6 22739827
    8 5wt4:A (2.92) BS01 C6P 2.8.1.7 GO:0005515 ... O25008 31587510
    9 5zso:A (2.7) BS01 C6P 2.8.1.7 GO:0003824 ... O32164 31587510
    10 5zss:A (3.17) BS01 C6P ? GO:0006534 ... A0A1I5NEH3 N/A
    11 6kfz:A (1.96) BS01 C6P 2.8.1.7 GO:0003824 ... O32164 31587510
    12 6kg0:A (2.78) BS01 C6P 2.8.1.7 GO:0005515 ... O25008 31587510
    13 6o11:A (1.84) BS01 C6P 2.8.1.7
    3.13.1.-
    4.4.1.16    		 GO:0001887 ... P77444 31248989
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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