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BioLiP
Download all results in tab-seperated text for 229 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 8csb:A (2.25) BS01 C5P ? GO:0000271 ... Q6U8B0 36271007
    202 8csb:B (2.25) BS02 C5P ? GO:0000271 ... Q6U8B0 36271007
    203 8csc:A (1.9) BS01 C5P ? GO:0000271 ... Q6U8B0 36271007
    204 8csc:B (1.9) BS01 C5P ? GO:0000271 ... Q6U8B0 36271007
    205 8csd:A (1.95) BS01 C5P ? GO:0000271 ... Q6U8B0 36271007
    206 8csd:B (1.95) BS01 C5P ? GO:0000271 ... Q6U8B0 36271007
    207 8cse:A (2.3) BS03 C5P ? GO:0000271 ... Q6U8B0 36271007
    208 8cse:B (2.3) BS02 C5P ? GO:0000271 ... Q6U8B0 36271007
    209 8csf:A (2.4) BS02 C5P ? GO:0000271 ... Q6U8B0 36271007
    210 8csf:B (2.4) BS02 C5P ? GO:0000271 ... Q6U8B0 36271007
    211 8fuw:A (1.9) BS01 C5P ? GO:0000271 ... A0A0H2Z2W8 36924942
    212 8fux:A (1.2) BS03 C5P ? GO:0000271 ... A0A0H2Z2W8 36924942
    213 8hce:B (1.501) BS01 C5P 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    214 8qjm:A (1.65) BS01 C5P N/A N/A N/A N/A
    215 8qjm:B (1.65) BS01 C5P N/A N/A N/A N/A
    216 8qjm:B (1.65) BS02 C5P N/A N/A N/A N/A
    217 8qjq:A (1.8) BS04 C5P N/A N/A N/A N/A
    218 8qjq:B (1.8) BS04 C5P N/A N/A N/A N/A
    219 8sv2:A (1.84) BS01 C5P ? GO:0016757 ... Q15KI8 N/A
    220 8vqz:A (2.05) BS01 C5P 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    221 8vqz:B (2.05) BS01 C5P 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    222 8vqz:C (2.05) BS01 C5P 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    223 8vqz:D (2.05) BS01 C5P 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    224 8xkf:B (2.5) BS02 C5P 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    225 8xkf:C (2.5) BS01 C5P 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    226 8xkf:D (2.5) BS02 C5P 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    227 8xkf:E (2.5) BS03 C5P 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    228 8xkf:F (2.5) BS01 C5P 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    229 8xkf:F (2.5) BS03 C5P 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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