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BioLiP
Download all results in tab-seperated text for 32 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1kxm:A (1.74) BS02 BZI 1.11.1.5 GO:0004601 ... P00431 11967381 MOAD: Kd=0.14mM
    2 1l5f:A (1.9) BS03 BZI 2.4.2.21 GO:0000166 ... Q05603 12119022
    3 1ryc:A (1.8) BS02 BZI 1.11.1.5 GO:0004601 ... P00431 8673607
    4 4dsu:A (1.7) BS02 BZI 3.6.5.2 GO:0000139 ... P01116 22431598 PDBbind: -logKd/Ki=2.82, Kd=1.5mM
    5 4hpx:B (1.65) BS01 BZI 4.2.1.20 GO:0000162 ... P0A2K1 23952479
    6 4hpx:B (1.65) BS02 BZI 4.2.1.20 GO:0000162 ... P0A2K1 23952479
    7 4hpx:B (1.65) BS03 BZI 4.2.1.20 GO:0000162 ... P0A2K1 23952479
    8 4nve:A (1.54) BS02 BZI 1.11.1.-
    1.11.1.5    		 GO:0004601 ... B3LRE1 24950326
    9 4xv5:A (1.65) BS02 BZI 1.11.1.5 GO:0004601 ... P00431 26032594
    10 4xv5:A (1.65) BS03 BZI 1.11.1.5 GO:0004601 ... P00431 26032594
    11 4xva:A (2.66) BS02 BZI 1.11.1.5 GO:0004601 ... P00431 26032594
    12 4xva:C (2.66) BS02 BZI 1.11.1.5 GO:0004601 ... P00431 26032594
    13 4xva:E (2.66) BS02 BZI 1.11.1.5 GO:0004601 ... P00431 26032594
    14 5k1l:A (1.08) BS02 BZI ? GO:0004601 ... Q9NAV7 N/A BindingDB: Kd=1.10e+5nM
    15 5k1l:B (1.08) BS02 BZI ? GO:0004601 ... Q9NAV7 N/A BindingDB: Kd=1.10e+5nM
    16 5phk:A (1.25) BS02 BZI 1.14.11.66 N/A Q6B0I6 28436492
    17 6x0c:A (1.45) BS01 BZI 4.2.1.20 GO:0000162 ... P00929 N/A
    18 6x0c:B (1.45) BS01 BZI 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    19 6x0c:B (1.45) BS03 BZI 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    20 7kxc:B (1.51) BS02 BZI 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    21 7kxc:B (1.51) BS03 BZI 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    22 7kyt:B (1.35) BS02 BZI 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    23 7kyt:B (1.35) BS03 BZI 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    24 7lgx:B (1.8) BS01 BZI 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    25 7lgx:B (1.8) BS02 BZI 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    26 7mt6:B (1.7) BS02 BZI 4.2.1.20 GO:0000162 ... P0A2K1 34996869
    27 7mt6:B (1.7) BS03 BZI 4.2.1.20 GO:0000162 ... P0A2K1 34996869
    28 9bnj:A (1.51) BS01 BZI 4.1.99.1 GO:0006569 ... P28796 N/A
    29 9bnj:A (1.51) BS03 BZI 4.1.99.1 GO:0006569 ... P28796 N/A
    30 9bnj:B (1.51) BS01 BZI 4.1.99.1 GO:0006569 ... P28796 N/A
    31 9bnj:C (1.51) BS01 BZI 4.1.99.1 GO:0006569 ... P28796 N/A
    32 9bnj:D (1.51) BS01 BZI 4.1.99.1 GO:0006569 ... P28796 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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