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BioLiP
Download all results in tab-seperated text for 10 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1c3b:A (2.25) BS01 BZB 3.5.2.6 GO:0008800 ... P00811 10595535 PDBbind: -logKd/Ki=7.57, Ki=27nM
    BindingDB: IC50=200nM, Ki=27nM
    2 1c3b:B (2.25) BS01 BZB 3.5.2.6 GO:0008800 ... P00811 10595535 BindingDB: IC50=200nM, Ki=27nM
    3 3fkv:A (1.847) BS01 BZB 3.5.2.6 GO:0008800 ... P00811 19241376 PDBbind: -logKd/Ki=7.57, Ki=0.027uM
    BindingDB: IC50=200nM, Ki=27nM
    4 3fkv:B (1.847) BS01 BZB 3.5.2.6 GO:0008800 ... P00811 19241376 BindingDB: IC50=200nM, Ki=27nM
    5 3ixb:A (1.63) BS01 BZB 3.5.2.6 GO:0008800 ... P00811 19913034 BindingDB: IC50=200nM, Ki=27nM
    6 3ixb:B (1.63) BS01 BZB 3.5.2.6 GO:0008800 ... P00811 19913034 BindingDB: IC50=200nM, Ki=27nM
    7 3ixg:B (2.14) BS01 BZB 3.5.2.6 GO:0008800 ... P00811 19913034 PDBbind: -logKd/Ki=7.57, Ki=27nM
    BindingDB: IC50=200nM, Ki=27nM
    8 4bd0:A (1.207) BS01 BZB 3.5.2.6 GO:0008800 ... Q47066 23255594
    9 4bd1:A (2.002) BS01 BZB 3.5.2.6 GO:0008800 ... Q47066 23255594
    10 4c3q:A (2.2) BS01 BZB 3.5.2.6 GO:0008800 ... Q47066 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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