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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3ovv:A (1.58) BS03 BUD 2.7.11.11 GO:0000287 ... P17612 N/A
    2 3poo:A (1.6) BS03 BUD 2.7.11.11 GO:0000287 ... P17612 N/A
    3 4xct:A (1.3) BS07 BUD 3.4.24.35 GO:0004222 ... P14780 26263024
    4 5d7s:L (1.88) BS01 BUD N/A N/A N/A 26406987
    5 5d7s:L (1.88) BS02 BUD N/A N/A N/A 26406987
    6 6y1w:A (1.6) BS01 BUD ? GO:0000166 ... B0RXY9 32627741
    7 6y1w:A (1.6) BS02 BUD ? GO:0000166 ... B0RXY9 32627741
    8 6y1w:A (1.6) BS03 BUD ? GO:0000166 ... B0RXY9 32627741
    9 6y1w:B (1.6) BS01 BUD ? GO:0000166 ... B0RXY9 32627741
    10 6y1w:B (1.6) BS02 BUD ? GO:0000166 ... B0RXY9 32627741
    11 6y1w:B (1.6) BS03 BUD ? GO:0000166 ... B0RXY9 32627741
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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