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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6eq2:A (1.802) BS01 BU8 3.6.1.-
    3.6.1.56    		 GO:0001669 ... P36639 31077996 PDBbind: -logKd/Ki=5.89, Kd=1.3uM
    BindingDB: IC50=1100nM, Kd=1300nM
    2 6glg:A (1.313) BS01 BU8 3.6.1.-
    3.6.1.56    		 GO:0001669 ... P36639 N/A BindingDB: IC50=1100nM, Kd=1300nM
    3 6glh:A (1.201) BS01 BU8 3.6.1.-
    3.6.1.56    		 GO:0001669 ... P36639 N/A BindingDB: IC50=1100nM, Kd=1300nM
    4 6gll:A (1.395) BS01 BU8 3.6.1.-
    3.6.1.56    		 GO:0001669 ... P36639 N/A BindingDB: IC50=1100nM, Kd=1300nM
    5 6gll:B (1.395) BS01 BU8 3.6.1.-
    3.6.1.56    		 GO:0001669 ... P36639 N/A BindingDB: IC50=1100nM, Kd=1300nM
    6 6glm:A (1.6) BS01 BU8 3.6.1.-
    3.6.1.56    		 GO:0001669 ... P36639 N/A BindingDB: IC50=1100nM, Kd=1300nM
    7 6glp:A (1.5) BS01 BU8 3.6.1.-
    3.6.1.56    		 GO:0001669 ... P36639 N/A BindingDB: IC50=1100nM, Kd=1300nM
    8 6glp:B (1.5) BS01 BU8 3.6.1.-
    3.6.1.56    		 GO:0001669 ... P36639 N/A BindingDB: IC50=1100nM, Kd=1300nM
    9 6glq:A (1.601) BS01 BU8 3.6.1.-
    3.6.1.56    		 GO:0001669 ... P36639 N/A BindingDB: IC50=1100nM, Kd=1300nM
    10 6glq:B (1.601) BS01 BU8 3.6.1.-
    3.6.1.56    		 GO:0001669 ... P36639 N/A BindingDB: IC50=1100nM, Kd=1300nM
    11 6glu:A (1.7) BS01 BU8 3.6.1.-
    3.6.1.56    		 GO:0001669 ... P36639 N/A BindingDB: IC50=1100nM, Kd=1300nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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