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BioLiP
Download all results in tab-seperated text for 16 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3ktm:A (2.7) BS01 BU4 ? GO:0008201 ... P05067 20212142
    2 3ktm:B (2.7) BS01 BU4 ? GO:0008201 ... P05067 20212142
    3 3ktm:C (2.7) BS01 BU4 ? GO:0008201 ... P05067 20212142
    4 3ktm:D (2.7) BS01 BU4 ? GO:0008201 ... P05067 20212142
    5 3ktm:E (2.7) BS01 BU4 ? GO:0008201 ... P05067 20212142
    6 3ktm:F (2.7) BS01 BU4 ? GO:0008201 ... P05067 20212142
    7 3ktm:G (2.7) BS01 BU4 ? GO:0008201 ... P05067 20212142
    8 3ktm:H (2.7) BS01 BU4 ? GO:0008201 ... P05067 20212142
    9 5w8q:A (1.173) BS01 BU4 2.3.1.177 GO:0009058 ... K9MST3 29199980
    10 5w8q:B (1.173) BS01 BU4 2.3.1.177 GO:0009058 ... K9MST3 29199980
    11 5wc4:A (1.2) BS01 BU4 2.3.1.177 GO:0009058 ... K9MST3 29199980
    12 5wc4:B (1.2) BS01 BU4 2.3.1.177 GO:0009058 ... K9MST3 29199980
    13 6a86:A (1.8) BS01 BU4 ? N/A A0A384E107 30913288
    14 6a86:C (1.8) BS01 BU4 ? N/A A0A384E107 30913288
    15 6a86:D (1.8) BS01 BU4 ? N/A A0A384E107 30913288
    16 6a86:F (1.8) BS01 BU4 ? N/A A0A384E107 30913288
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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