Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 33 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2q9y:B (2.85) BS03 BTM 4.2.3.6 GO:0016106 ... P13513 17678871 PDBbind: -logKd/Ki=4.44, Ki=36uM
    2 3kb9:A (1.598) BS03 BTM 4.2.3.37 GO:0016829 ... Q9K499 20131801
    3 3lg5:A (1.641) BS03 BTM 4.2.3.37 GO:0016829 ... Q9K499 20131801
    4 4ltz:A (2.448) BS03 BTM 4.2.3.37 GO:0016829 ... Q9K499 24517311
    5 4luu:A (1.95) BS03 BTM 4.2.3.37 GO:0016829 ... Q9K499 24517311
    6 4lxw:A (2.092) BS03 BTM 4.2.3.37 GO:0016829 ... Q9K499 24517311
    7 4lz0:A (1.754) BS03 BTM 4.2.3.37 GO:0016829 ... Q9K499 24517311
    8 4lz3:A (2.095) BS03 BTM 4.2.3.37 GO:0016829 ... Q9K499 24517311
    9 6ax9:A (2.403) BS03 BTM 4.2.3.37 GO:0016829 ... Q9K499 28967743
    10 6axm:A (1.8) BS03 BTM 4.2.3.37 GO:0016829 ... Q9K499 28967743
    11 6axn:A (1.9) BS03 BTM 4.2.3.37 GO:0016829 ... Q9K499 28967743
    12 6axu:A (1.822) BS01 BTM 4.2.3.37 GO:0016829 ... Q9K499 28967743
    13 6ofv:A (1.91) BS03 BTM 4.2.3.37 GO:0016829 ... Q9K499 31152775
    14 6vyd:A (1.46) BS05 BTM ? GO:0046872 ... I1RDR8 32769971
    15 6vyd:B (1.46) BS05 BTM ? GO:0046872 ... I1RDR8 32769971
    16 7kjg:A (1.3) BS03 BTM 4.2.3.37 GO:0016829 ... Q9K499 33270439
    17 8h4p:A (1.47) BS01 BTM 4.2.3.- GO:0016829 ... I1S104 37018048
    18 8h4p:B (1.47) BS01 BTM 4.2.3.- GO:0016829 ... I1S104 37018048
    19 8h6u:A (2.78) BS04 BTM 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    20 8h6u:B (2.78) BS04 BTM 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    21 8h6u:C (2.78) BS04 BTM 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    22 8h6u:D (2.78) BS04 BTM 4.2.3.74 GO:0000287 ... Q6WP50 37018048
    23 8h72:A (2.09) BS02 BTM 4.2.3.135 GO:0016829 ... A0A4S8MAF3 37018048
    24 8h72:B (2.09) BS02 BTM 4.2.3.135 GO:0016829 ... A0A4S8MAF3 37018048
    25 8su3:A (1.29) BS03 BTM 4.2.3.37 GO:0016829 ... Q9K499 37449555
    26 8su4:A (1.43) BS03 BTM 4.2.3.37 GO:0016829 ... Q9K499 37449555
    27 8su5:A (1.48) BS01 BTM 4.2.3.37 GO:0016829 ... Q9K499 37449555
    28 8v3k:A (1.47) BS03 BTM 4.2.3.37 GO:0016829 ... Q9K499 38420671
    29 8yl9:A (2.75) BS05 BTM 2.5.1.29
    2.5.1.81
    4.2.3.-    		 N/A A0A2Z6AQX7 38584136
    30 8yl9:B (2.75) BS05 BTM 2.5.1.29
    2.5.1.81
    4.2.3.-    		 N/A A0A2Z6AQX7 38584136
    31 8yl9:I (2.75) BS05 BTM 2.5.1.29
    2.5.1.81
    4.2.3.-    		 N/A A0A2Z6AQX7 38584136
    32 8yla:A (1.3) BS04 BTM 2.5.1.29
    2.5.1.81
    4.2.3.176    		 N/A A1DN30 38584136
    33 8yla:B (1.3) BS04 BTM 2.5.1.29
    2.5.1.81
    4.2.3.176    		 N/A A1DN30 38584136
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417