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BioLiP
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1wqw:A (1.45) BS01 BT5 6.3.4.15 GO:0004077 ... O57883 16169557
    2 1wqw:B (1.45) BS01 BT5 6.3.4.15 GO:0004077 ... O57883 16169557
    3 2deq:A (1.85) BS01 BT5 6.3.4.15 GO:0004077 ... O57883 N/A
    4 2deq:B (1.85) BS01 BT5 6.3.4.15 GO:0004077 ... O57883 N/A
    5 2djz:A (1.85) BS01 BT5 6.3.4.15 GO:0004077 ... O57883 N/A
    6 2djz:B (1.85) BS01 BT5 6.3.4.15 GO:0004077 ... O57883 N/A
    7 2dkg:A (2.0) BS03 BT5 6.3.4.15 GO:0004077 ... O57883 N/A
    8 2dkg:B (2.0) BS01 BT5 6.3.4.15 GO:0004077 ... O57883 N/A
    9 2dti:A (2.2) BS03 BT5 6.3.4.15 GO:0004077 ... O57883 N/A
    10 2dti:B (2.2) BS02 BT5 6.3.4.15 GO:0004077 ... O57883 N/A
    11 2dve:A (1.6) BS01 BT5 6.3.4.15 GO:0004077 ... O57883 N/A
    12 2dve:B (1.6) BS01 BT5 6.3.4.15 GO:0004077 ... O57883 N/A
    13 2dxu:A (1.28) BS01 BT5 6.3.4.15 GO:0004077 ... O57883 18372281
    14 2dxu:B (1.28) BS01 BT5 6.3.4.15 GO:0004077 ... O57883 18372281
    15 2dz9:A (1.84) BS01 BT5 6.3.4.15 GO:0004077 ... O57883 N/A
    16 2dz9:B (1.84) BS01 BT5 6.3.4.15 GO:0004077 ... O57883 N/A
    17 3rir:A (2.6) BS01 BT5 N/A GO:0004077 ... N/A N/A
    18 3rkw:A (2.5) BS01 BT5 N/A GO:0004077 ... N/A N/A
    19 3v8l:A (2.6) BS01 BT5 N/A GO:0004077 ... N/A 22437830
    20 4op0:A (1.7) BS01 BT5 6.3.4.15 GO:0004077 ... I6YFP0 24723382
    21 4op0:B (1.7) BS01 BT5 6.3.4.15 GO:0004077 ... I6YFP0 24723382
    22 6jhu:A (1.97) BS01 BT5 6.3.4.15 GO:0004077 ... Q4Q6F6 N/A
    23 9j8e:A (2.65) BS01 BT5 N/A N/A P46363 39213703
    24 9j8e:B (2.65) BS01 BT5 N/A N/A P46363 39213703
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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