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BioLiP
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2gby:A (2.9) BS01 BRN ? GO:0003677 ... P0A0N4 N/A
    2 3gy2:A (1.57) BS02 BRN 3.4.21.4 GO:0004175 ... P00760 20356563 MOAD: Kd=1.8uM
    PDBbind: -logKd/Ki=5.74, Kd=1.80uM
    3 3gy5:A (1.57) BS02 BRN 3.4.21.4 GO:0004175 ... P00760 20356563 MOAD: Kd=1.8uM
    4 3gy6:A (1.7) BS02 BRN 3.4.21.4 GO:0004175 ... P00760 20356563 MOAD: Kd=1.8uM
    5 3gy8:A (1.75) BS02 BRN 3.4.21.4 GO:0004175 ... P00760 20356563 MOAD: Kd=1.8uM
    6 3hig:A (2.09) BS04 BRN 1.4.3.22 GO:0005507 ... P19801 19764817 MOAD: Ki=13nM
    PDBbind: -logKd/Ki=7.89, Ki=13nM
    BindingDB: Ki=13nM
    7 3hig:B (2.09) BS04 BRN 1.4.3.22 GO:0005507 ... P19801 19764817 MOAD: Ki=13nM
    PDBbind: -logKd/Ki=7.89, Ki=13nM
    BindingDB: Ki=13nM
    8 5tp0:A (1.25) BS02 BRN 3.4.21.4 GO:0004252 ... P35030 28463992 MOAD: Ki=3.66uM
    PDBbind: -logKd/Ki=5.44, Ki=3.66uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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