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BioLiP
Download all results in tab-seperated text for 69 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v1f:A (1.697) BS01 BQ1 N/A GO:0015078 ... N/A 26601184 PDBbind: -logKd/Ki=7.70, IC50~20nM
    2 4v1f:A (1.697) BS02 BQ1 N/A GO:0015078 ... N/A 26601184 PDBbind: -logKd/Ki=7.70, IC50~20nM
    3 4v1f:B (1.697) BS01 BQ1 N/A GO:0015078 ... N/A 26601184
    4 4v1f:C (1.697) BS01 BQ1 N/A GO:0015078 ... N/A 26601184
    5 7jg8:2 (3.3) BS01 BQ1 ? GO:0005886 ... A0R205 33299175
    6 7jg8:4 (3.3) BS01 BQ1 ? GO:0005886 ... A0R205 33299175
    7 7jg9:1 (3.4) BS01 BQ1 ? GO:0005886 ... A0R205 33299175
    8 7jg9:8 (3.4) BS01 BQ1 ? GO:0005886 ... A0R205 33299175
    9 7jga:1 (3.2) BS01 BQ1 ? GO:0005886 ... A0R205 33299175
    10 7jga:1 (3.2) BS02 BQ1 ? GO:0005886 ... A0R205 33299175
    11 7jga:4 (3.2) BS01 BQ1 ? GO:0005886 ... A0R205 33299175
    12 7jga:6 (3.2) BS01 BQ1 ? GO:0005886 ... A0R205 33299175
    13 7jga:6 (3.2) BS02 BQ1 ? GO:0005886 ... A0R205 33299175
    14 7jga:7 (3.2) BS01 BQ1 ? GO:0005886 ... A0R205 33299175
    15 7jga:7 (3.2) BS02 BQ1 ? GO:0005886 ... A0R205 33299175
    16 7jga:8 (3.2) BS01 BQ1 ? GO:0005886 ... A0R205 33299175
    17 7jga:8 (3.2) BS02 BQ1 ? GO:0005886 ... A0R205 33299175
    18 7jga:9 (3.2) BS01 BQ1 ? GO:0005886 ... A0R205 33299175
    19 7jga:a (3.2) BS01 BQ1 ? GO:0005886 ... A0R206 33299175
    20 7jga:a (3.2) BS02 BQ1 ? GO:0005886 ... A0R206 33299175
    21 7jgc:1 (3.4) BS01 BQ1 ? GO:0005886 ... A0R205 33299175
    22 7jgc:1 (3.4) BS02 BQ1 ? GO:0005886 ... A0R205 33299175
    23 7jgc:4 (3.4) BS01 BQ1 ? GO:0005886 ... A0R205 33299175
    24 7jgc:6 (3.4) BS01 BQ1 ? GO:0005886 ... A0R205 33299175
    25 7jgc:6 (3.4) BS02 BQ1 ? GO:0005886 ... A0R205 33299175
    26 7jgc:7 (3.4) BS01 BQ1 ? GO:0005886 ... A0R205 33299175
    27 7jgc:7 (3.4) BS02 BQ1 ? GO:0005886 ... A0R205 33299175
    28 7jgc:8 (3.4) BS01 BQ1 ? GO:0005886 ... A0R205 33299175
    29 7jgc:8 (3.4) BS02 BQ1 ? GO:0005886 ... A0R205 33299175
    30 7jgc:9 (3.4) BS01 BQ1 ? GO:0005886 ... A0R205 33299175
    31 7jgc:a (3.4) BS01 BQ1 ? GO:0005886 ... A0R206 33299175
    32 7jgc:a (3.4) BS02 BQ1 ? GO:0005886 ... A0R206 33299175
    33 7njv:M (2.9) BS01 BQ1 ? GO:0005886 ... A0R205 34782468
    34 7njv:N (2.9) BS01 BQ1 ? GO:0005886 ... A0R205 34782468
    35 7njv:a (2.9) BS01 BQ1 ? GO:0005886 ... A0R206 34782468
    36 8j0s:1 (2.58) BS01 BQ1 ? GO:0005886 ... P9WPS1 38961288
    37 8j0s:1 (2.58) BS02 BQ1 ? GO:0005886 ... P9WPS1 38961288
    38 8j0s:2 (2.58) BS01 BQ1 ? GO:0005886 ... P9WPS1 38961288
    39 8j0s:4 (2.58) BS01 BQ1 ? GO:0005886 ... P9WPS1 38961288
    40 8j0s:5 (2.58) BS01 BQ1 ? GO:0005886 ... P9WPS1 38961288
    41 8j0s:5 (2.58) BS02 BQ1 ? GO:0005886 ... P9WPS1 38961288
    42 8j0s:6 (2.58) BS01 BQ1 ? GO:0005886 ... P9WPS1 38961288
    43 8j0s:6 (2.58) BS02 BQ1 ? GO:0005886 ... P9WPS1 38961288
    44 8j0s:7 (2.58) BS01 BQ1 ? GO:0005886 ... P9WPS1 38961288
    45 8j0s:7 (2.58) BS02 BQ1 ? GO:0005886 ... P9WPS1 38961288
    46 8j0s:8 (2.58) BS01 BQ1 ? GO:0005886 ... P9WPS1 38961288
    47 8j0s:8 (2.58) BS02 BQ1 ? GO:0005886 ... P9WPS1 38961288
    48 8j0s:9 (2.58) BS01 BQ1 ? GO:0005886 ... P9WPS1 38961288
    49 8j0s:9 (2.58) BS02 BQ1 ? GO:0005886 ... P9WPS1 38961288
    50 8j0s:a (2.58) BS01 BQ1 ? GO:0005886 ... P9WPV7 38961288
    51 8j0s:a (2.58) BS02 BQ1 ? GO:0005886 ... P9WPV7 38961288
    52 8j57:1 (2.85) BS01 BQ1 ? GO:0005886 ... P9WPS1 38961288
    53 8j57:1 (2.85) BS02 BQ1 ? GO:0005886 ... P9WPS1 38961288
    54 8j57:2 (2.85) BS01 BQ1 ? GO:0005886 ... P9WPS1 38961288
    55 8j57:4 (2.85) BS01 BQ1 ? GO:0005886 ... P9WPS1 38961288
    56 8j57:5 (2.85) BS01 BQ1 ? GO:0005886 ... P9WPS1 38961288
    57 8j57:6 (2.85) BS01 BQ1 ? GO:0005886 ... P9WPS1 38961288
    58 8j57:6 (2.85) BS02 BQ1 ? GO:0005886 ... P9WPS1 38961288
    59 8j57:7 (2.85) BS01 BQ1 ? GO:0005886 ... P9WPS1 38961288
    60 8j57:7 (2.85) BS02 BQ1 ? GO:0005886 ... P9WPS1 38961288
    61 8j57:8 (2.85) BS01 BQ1 ? GO:0005886 ... P9WPS1 38961288
    62 8j57:8 (2.85) BS02 BQ1 ? GO:0005886 ... P9WPS1 38961288
    63 8j57:9 (2.85) BS01 BQ1 ? GO:0005886 ... P9WPS1 38961288
    64 8j57:9 (2.85) BS02 BQ1 ? GO:0005886 ... P9WPS1 38961288
    65 8j57:a (2.85) BS01 BQ1 ? GO:0005886 ... P9WPV7 38961288
    66 8j57:a (2.85) BS02 BQ1 ? GO:0005886 ... P9WPV7 38961288
    67 8khf:4 (3.13) BS01 BQ1 ? GO:0015078 ... P05496 38961288
    68 8ki3:4 (2.89) BS01 BQ1 ? GO:0015078 ... P05496 38961288
    69 8ki3:5 (2.89) BS01 BQ1 ? GO:0015078 ... P05496 38961288
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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