Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 726 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 2 3 4 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 4v8k:AL (3.006) BS07 BPH ? GO:0005515 ... D2Z0P3 24670637
    402 4v8k:AM (3.006) BS01 BPH ? GO:0005515 ... A8ASG6 24670637
    403 4v8k:AM (3.006) BS04 BPH ? GO:0005515 ... A8ASG6 24670637
    404 4v8k:BL (3.006) BS02 BPH ? GO:0005515 ... D2Z0P3 24670637
    405 4v8k:BL (3.006) BS07 BPH ? GO:0005515 ... D2Z0P3 24670637
    406 4v8k:BM (3.006) BS01 BPH ? GO:0005515 ... A8ASG6 24670637
    407 4v8k:BM (3.006) BS05 BPH ? GO:0005515 ... A8ASG6 24670637
    408 4v9g:AL (7.78) BS03 BPH ? GO:0009772 ... P0C0Y8 24131108
    409 4v9g:AL (7.78) BS06 BPH ? GO:0009772 ... P0C0Y8 24131108
    410 4v9g:AM (7.78) BS02 BPH ? GO:0009772 ... P0C0Y9 24131108
    411 4v9g:AM (7.78) BS05 BPH ? GO:0009772 ... P0C0Y9 24131108
    412 4v9g:BL (7.78) BS04 BPH ? GO:0009772 ... P0C0Y8 24131108
    413 4v9g:BL (7.78) BS07 BPH ? GO:0009772 ... P0C0Y8 24131108
    414 4v9g:BM (7.78) BS03 BPH ? GO:0009772 ... P0C0Y9 24131108
    415 4v9g:BM (7.78) BS05 BPH ? GO:0009772 ... P0C0Y9 24131108
    416 5b5m:L (3.3) BS02 BPH ? GO:0005515 ... D2Z0P3 27933779
    417 5b5m:L (3.3) BS08 BPH ? GO:0005515 ... D2Z0P3 27933779
    418 5b5m:M (3.3) BS02 BPH ? GO:0005515 ... A8ASG6 27933779
    419 5b5m:M (3.3) BS06 BPH ? GO:0005515 ... A8ASG6 27933779
    420 5b5m:x (3.3) BS02 BPH ? GO:0005515 ... D2Z0P3 27933779
    421 5b5m:x (3.3) BS08 BPH ? GO:0005515 ... D2Z0P3 27933779
    422 5b5m:y (3.3) BS01 BPH ? GO:0005515 ... A8ASG6 27933779
    423 5b5m:y (3.3) BS05 BPH ? GO:0005515 ... A8ASG6 27933779
    424 5b5n:L (3.3) BS02 BPH ? GO:0005515 ... D2Z0P3 27933779
    425 5b5n:L (3.3) BS08 BPH ? GO:0005515 ... D2Z0P3 27933779
    426 5b5n:M (3.3) BS02 BPH ? GO:0005515 ... A8ASG6 27933779
    427 5b5n:M (3.3) BS07 BPH ? GO:0005515 ... A8ASG6 27933779
    428 5b5n:x (3.3) BS02 BPH ? GO:0005515 ... D2Z0P3 27933779
    429 5b5n:x (3.3) BS08 BPH ? GO:0005515 ... D2Z0P3 27933779
    430 5b5n:y (3.3) BS01 BPH ? GO:0005515 ... A8ASG6 27933779
    431 5b5n:y (3.3) BS06 BPH ? GO:0005515 ... A8ASG6 27933779
    432 5lri:L (2.4) BS02 BPH ? GO:0009772 ... Q3J1A5 27687473
    433 5lri:L (2.4) BS07 BPH ? GO:0009772 ... Q3J1A5 27687473
    434 5lri:M (2.4) BS01 BPH ? GO:0009772 ... Q3J1A6 27687473
    435 5lri:M (2.4) BS06 BPH ? GO:0009772 ... Q3J1A6 27687473
    436 5lse:L (2.5) BS03 BPH ? GO:0009772 ... P0C0Y8 27687473
    437 5lse:L (2.5) BS07 BPH ? GO:0009772 ... P0C0Y8 27687473
    438 5lse:M (2.5) BS02 BPH ? GO:0009772 ... P0C0Y9 27687473
    439 5lse:M (2.5) BS06 BPH ? GO:0009772 ... P0C0Y9 27687473
    440 5v33:L (3.487) BS01 BPH ? GO:0009772 ... P0C0Y8 28469762
    441 5v33:L (3.487) BS07 BPH ? GO:0009772 ... P0C0Y8 28469762
    442 5v33:M (3.487) BS01 BPH ? GO:0009772 ... P0C0Y9 28469762
    443 5v33:M (3.487) BS06 BPH ? GO:0009772 ... P0C0Y9 28469762
    444 5y5s:L (1.9) BS02 BPH ? GO:0005515 ... D2Z0P3 29618814
    445 5y5s:L (1.9) BS09 BPH ? GO:0005515 ... D2Z0P3 29618814
    446 5y5s:M (1.9) BS01 BPH ? GO:0005515 ... A8ASG6 29618814
    447 5y5s:M (1.9) BS06 BPH ? GO:0005515 ... A8ASG6 29618814
    448 5yq7:L (4.1) BS04 BPH ? GO:0009772 ... Q83XD0 29674684
    449 5yq7:L (4.1) BS08 BPH ? GO:0009772 ... Q83XD0 29674684
    450 5yq7:L (4.1) BS09 BPH ? GO:0009772 ... Q83XD0 29674684
    451 5yq7:M (4.1) BS02 BPH ? GO:0009772 ... Q83XD0 29674684
    452 5yq7:M (4.1) BS06 BPH ? GO:0009772 ... Q83XD0 29674684
    453 5yq7:M (4.1) BS07 BPH ? GO:0009772 ... Q83XD0 29674684
    454 6z02:L (2.1) BS02 BPH ? GO:0009772 ... P0C0Y8 33209319
    455 6z02:L (2.1) BS06 BPH ? GO:0009772 ... P0C0Y8 33209319
    456 6z02:M (2.1) BS01 BPH ? GO:0009772 ... P0C0Y9 33209319
    457 6z02:M (2.1) BS05 BPH ? GO:0009772 ... P0C0Y9 33209319
    458 6z1j:L (2.1) BS03 BPH ? GO:0009772 ... P0C0Y8 33209319
    459 6z1j:L (2.1) BS05 BPH ? GO:0009772 ... P0C0Y8 33209319
    460 6z1j:M (2.1) BS02 BPH ? GO:0009772 ... P0C0Y9 33209319
    461 6z1j:M (2.1) BS05 BPH ? GO:0009772 ... P0C0Y9 33209319
    462 6z27:L (2.1) BS02 BPH ? GO:0009772 ... P0C0Y8 33209319
    463 6z27:L (2.1) BS06 BPH ? GO:0009772 ... P0C0Y8 33209319
    464 6z27:M (2.1) BS01 BPH ? GO:0009772 ... P0C0Y9 33209319
    465 6z27:M (2.1) BS05 BPH ? GO:0009772 ... P0C0Y9 33209319
    466 6z5r:L (2.8) BS02 BPH ? GO:0009772 ... O83005 33523887
    467 6z5r:L (2.8) BS09 BPH ? GO:0009772 ... O83005 33523887
    468 6z5r:M (2.8) BS01 BPH ? GO:0009772 ... A0A4Z7 33523887
    469 6z5r:M (2.8) BS06 BPH ? GO:0009772 ... A0A4Z7 33523887
    470 6z5s:L (2.65) BS01 BPH ? GO:0009772 ... O83005 33523887
    471 6z5s:L (2.65) BS07 BPH ? GO:0009772 ... O83005 33523887
    472 6z5s:M (2.65) BS03 BPH ? GO:0009772 ... A0A4Z7 33523887
    473 6z5s:M (2.65) BS08 BPH ? GO:0009772 ... A0A4Z7 33523887
    474 7c52:L (2.89) BS03 BPH ? GO:0005515 ... D2Z0P3 33597527
    475 7c52:L (2.89) BS09 BPH ? GO:0005515 ... D2Z0P3 33597527
    476 7c52:M (2.89) BS02 BPH ? GO:0005515 ... A8ASG6 33597527
    477 7c52:M (2.89) BS06 BPH ? GO:0005515 ... A8ASG6 33597527
    478 7c9r:L (2.82) BS02 BPH ? GO:0009772 ... G1BIY6 33009385
    479 7c9r:L (2.82) BS08 BPH ? GO:0009772 ... G1BIY6 33009385
    480 7c9r:M (2.82) BS01 BPH ? GO:0009772 ... G1BIY7 33009385
    481 7c9r:M (2.82) BS06 BPH ? GO:0009772 ... G1BIY7 33009385
    482 7ddq:L (2.84) BS03 BPH ? GO:0009772 ... A0A2T4JIS6 34134992
    483 7ddq:L (2.84) BS07 BPH ? GO:0009772 ... A0A2T4JIS6 34134992
    484 7ddq:L (2.84) BS09 BPH ? GO:0009772 ... A0A2T4JIS6 34134992
    485 7ddq:M (2.84) BS01 BPH ? GO:0009772 ... A0A2T4JIN0 34134992
    486 7ddq:M (2.84) BS02 BPH ? GO:0009772 ... A0A2T4JIN0 34134992
    487 7ddq:M (2.84) BS05 BPH ? GO:0009772 ... A0A2T4JIN0 34134992
    488 7f0l:L (2.94) BS02 BPH ? GO:0009772 ... Q3J1A5 34728609
    489 7f0l:L (2.94) BS07 BPH ? GO:0009772 ... Q3J1A5 34728609
    490 7f0l:M (2.94) BS01 BPH ? GO:0009772 ... Q3J1A6 34728609
    491 7f0l:M (2.94) BS06 BPH ? GO:0009772 ... Q3J1A6 34728609
    492 7mh3:L (2.3) BS02 BPH ? GO:0009772 ... Q3J1A5 34907018
    493 7mh3:L (2.3) BS07 BPH ? GO:0009772 ... Q3J1A5 34907018
    494 7mh3:M (2.3) BS02 BPH ? GO:0009772 ... Q3J1A6 34907018
    495 7mh3:M (2.3) BS06 BPH ? GO:0009772 ... Q3J1A6 34907018
    496 7mh4:L (2.48) BS02 BPH ? GO:0009772 ... Q3J1A5 34907018
    497 7mh4:L (2.48) BS05 BPH ? GO:0009772 ... Q3J1A5 34907018
    498 7mh4:M (2.48) BS02 BPH ? GO:0009772 ... Q3J1A6 34907018
    499 7mh4:M (2.48) BS03 BPH ? GO:0009772 ... Q3J1A6 34907018
    500 7mh5:L (2.85) BS01 BPH ? GO:0009772 ... Q3J1A5 34907018
    501 7mh5:L (2.85) BS07 BPH ? GO:0009772 ... Q3J1A5 34907018
    502 7mh5:M (2.85) BS01 BPH ? GO:0009772 ... Q3J1A6 34907018
    503 7mh5:M (2.85) BS06 BPH ? GO:0009772 ... Q3J1A6 34907018
    504 7mh8:L (2.75) BS02 BPH ? GO:0009772 ... Q3J1A5 34907018
    505 7mh8:L (2.75) BS07 BPH ? GO:0009772 ... Q3J1A5 34907018
    506 7mh8:M (2.75) BS02 BPH ? GO:0009772 ... Q3J1A6 34907018
    507 7mh8:M (2.75) BS06 BPH ? GO:0009772 ... Q3J1A6 34907018
    508 7mh9:L (3.1) BS02 BPH ? GO:0009772 ... Q3J1A5 34907018
    509 7mh9:L (3.1) BS06 BPH ? GO:0009772 ... Q3J1A5 34907018
    510 7mh9:M (3.1) BS02 BPH ? GO:0009772 ... Q3J1A6 34907018
    511 7mh9:M (3.1) BS04 BPH ? GO:0009772 ... Q3J1A6 34907018
    512 7mha:L (2.79) BS02 BPH ? GO:0009772 ... Q3J1A5 N/A
    513 7mha:L (2.79) BS05 BPH ? GO:0009772 ... Q3J1A5 N/A
    514 7mha:M (2.79) BS02 BPH ? GO:0009772 ... Q3J1A6 N/A
    515 7mha:M (2.79) BS03 BPH ? GO:0009772 ... Q3J1A6 N/A
    516 7o0u:L (2.35) BS05 BPH ? GO:0009772 ... A0A143BHR2 35171663
    517 7o0u:L (2.35) BS07 BPH ? GO:0009772 ... A0A143BHR2 35171663
    518 7o0u:M (2.35) BS04 BPH N/A GO:0009772 ... N/A 35171663
    519 7o0u:M (2.35) BS07 BPH N/A GO:0009772 ... N/A 35171663
    520 7o0v:L (2.5) BS05 BPH ? GO:0009772 ... A0A143BHR2 35171663
    521 7o0v:L (2.5) BS08 BPH ? GO:0009772 ... A0A143BHR2 35171663
    522 7o0v:M (2.5) BS03 BPH N/A GO:0009772 ... N/A 35171663
    523 7o0v:M (2.5) BS07 BPH N/A GO:0009772 ... N/A 35171663
    524 7o0w:L (2.47) BS02 BPH ? GO:0009772 ... A0A143BHR2 35171663
    525 7o0w:L (2.47) BS10 BPH ? GO:0009772 ... A0A143BHR2 35171663
    526 7o0w:M (2.47) BS03 BPH N/A GO:0009772 ... N/A 35171663
    527 7o0w:M (2.47) BS09 BPH N/A GO:0009772 ... N/A 35171663
    528 7o0x:L (2.44) BS02 BPH ? GO:0009772 ... A0A143BHR2 35171663
    529 7o0x:L (2.44) BS09 BPH ? GO:0009772 ... A0A143BHR2 35171663
    530 7o0x:M (2.44) BS02 BPH N/A GO:0009772 ... N/A 35171663
    531 7o0x:M (2.44) BS07 BPH N/A GO:0009772 ... N/A 35171663
    532 7od5:L (2.1) BS03 BPH ? GO:0009772 ... Q3J1A5 35371503
    533 7od5:L (2.1) BS05 BPH ? GO:0009772 ... Q3J1A5 35371503
    534 7od5:M (2.1) BS02 BPH ? GO:0009772 ... Q3J1A6 35371503
    535 7od5:M (2.1) BS07 BPH ? GO:0009772 ... Q3J1A6 35371503
    536 7oy8:L (2.5) BS01 BPH ? GO:0009772 ... Q2RQ25 34402504
    537 7oy8:L (2.5) BS08 BPH ? GO:0009772 ... Q2RQ25 34402504
    538 7oy8:M (2.5) BS02 BPH ? GO:0009772 ... Q2RQ26 34402504
    539 7oy8:M (2.5) BS06 BPH ? GO:0009772 ... Q2RQ26 34402504
    540 7p0q:L (1.73) BS03 BPH ? GO:0009772 ... P0C0Y8 N/A
    541 7p0q:L (1.73) BS06 BPH ? GO:0009772 ... P0C0Y8 N/A
    542 7p0q:M (1.73) BS02 BPH ? GO:0009772 ... P0C0Y9 N/A
    543 7p0q:M (1.73) BS08 BPH ? GO:0009772 ... P0C0Y9 N/A
    544 7p17:L (2.22) BS03 BPH ? GO:0009772 ... P0C0Y8 N/A
    545 7p17:L (2.22) BS04 BPH ? GO:0009772 ... P0C0Y8 N/A
    546 7p17:M (2.22) BS02 BPH ? GO:0009772 ... P0C0Y9 N/A
    547 7p17:M (2.22) BS03 BPH ? GO:0009772 ... P0C0Y9 N/A
    548 7p2c:L (2.04) BS03 BPH ? GO:0009772 ... Q3J1A5 35371503
    549 7p2c:L (2.04) BS06 BPH ? GO:0009772 ... Q3J1A5 35371503
    550 7p2c:M (2.04) BS03 BPH ? GO:0009772 ... Q3J1A6 35371503
    551 7p2c:M (2.04) BS09 BPH ? GO:0009772 ... Q3J1A6 35371503
    552 7pil:L (2.5) BS01 BPH ? GO:0009772 ... Q3J1A5 34590677
    553 7pil:L (2.5) BS06 BPH ? GO:0009772 ... Q3J1A5 34590677
    554 7pil:M (2.5) BS01 BPH ? GO:0009772 ... Q3J1A6 34590677
    555 7pil:M (2.5) BS03 BPH ? GO:0009772 ... Q3J1A6 34590677
    556 7pqd:L (2.9) BS06 BPH N/A GO:0009772 ... N/A 34622934
    557 7pqd:L (2.9) BS08 BPH N/A GO:0009772 ... N/A 34622934
    558 7pqd:M (2.9) BS02 BPH ? GO:0009772 ... Q3J1A6 34622934
    559 7pqd:M (2.9) BS04 BPH ? GO:0009772 ... Q3J1A6 34622934
    560 7pqd:l (2.9) BS04 BPH N/A GO:0009772 ... N/A 34622934
    561 7pqd:l (2.9) BS08 BPH N/A GO:0009772 ... N/A 34622934
    562 7pqd:m (2.9) BS01 BPH ? GO:0009772 ... Q3J1A6 34622934
    563 7pqd:m (2.9) BS03 BPH ? GO:0009772 ... Q3J1A6 34622934
    564 7q7f:L (2.75) BS01 BPH ? GO:0009772 ... P0C0Y8 N/A
    565 7q7f:L (2.75) BS04 BPH ? GO:0009772 ... P0C0Y8 N/A
    566 7q7f:M (2.75) BS01 BPH ? GO:0009772 ... P0C0Y9 N/A
    567 7q7f:M (2.75) BS03 BPH ? GO:0009772 ... P0C0Y9 N/A
    568 7q7g:L (2.69) BS01 BPH ? GO:0009772 ... P0C0Y8 N/A
    569 7q7g:L (2.69) BS04 BPH ? GO:0009772 ... P0C0Y8 N/A
    570 7q7g:M (2.69) BS01 BPH ? GO:0009772 ... P0C0Y9 N/A
    571 7q7g:M (2.69) BS03 BPH ? GO:0009772 ... P0C0Y9 N/A
    572 7q7h:L (2.49) BS01 BPH ? GO:0009772 ... P0C0Y8 N/A
    573 7q7h:L (2.49) BS06 BPH ? GO:0009772 ... P0C0Y8 N/A
    574 7q7h:M (2.49) BS01 BPH ? GO:0009772 ... P0C0Y9 N/A
    575 7q7h:M (2.49) BS06 BPH ? GO:0009772 ... P0C0Y9 N/A
    576 7q7j:L (2.69) BS01 BPH ? GO:0009772 ... P0C0Y8 N/A
    577 7q7j:L (2.69) BS04 BPH ? GO:0009772 ... P0C0Y8 N/A
    578 7q7j:M (2.69) BS01 BPH ? GO:0009772 ... P0C0Y9 N/A
    579 7q7j:M (2.69) BS03 BPH ? GO:0009772 ... P0C0Y9 N/A
    580 7q7m:L (2.55) BS01 BPH ? GO:0009772 ... P0C0Y8 N/A
    581 7q7m:L (2.55) BS06 BPH ? GO:0009772 ... P0C0Y8 N/A
    582 7q7m:M (2.55) BS01 BPH ? GO:0009772 ... P0C0Y9 N/A
    583 7q7m:M (2.55) BS06 BPH ? GO:0009772 ... P0C0Y9 N/A
    584 7q7n:L (2.87) BS01 BPH ? GO:0009772 ... P0C0Y8 N/A
    585 7q7n:L (2.87) BS04 BPH ? GO:0009772 ... P0C0Y8 N/A
    586 7q7n:M (2.87) BS01 BPH ? GO:0009772 ... P0C0Y9 N/A
    587 7q7n:M (2.87) BS03 BPH ? GO:0009772 ... P0C0Y9 N/A
    588 7q7o:L (2.65) BS01 BPH ? GO:0009772 ... P0C0Y8 N/A
    589 7q7o:L (2.65) BS04 BPH ? GO:0009772 ... P0C0Y8 N/A
    590 7q7o:M (2.65) BS01 BPH ? GO:0009772 ... P0C0Y9 N/A
    591 7q7o:M (2.65) BS03 BPH ? GO:0009772 ... P0C0Y9 N/A
    592 7vb9:L (3.45) BS03 BPH ? GO:0009772 ... Q3J1A5 35418573
    593 7vb9:L (3.45) BS06 BPH ? GO:0009772 ... Q3J1A5 35418573
    594 7vb9:M (3.45) BS02 BPH ? GO:0009772 ... Q3J1A6 35418573
    595 7vb9:M (3.45) BS04 BPH ? GO:0009772 ... Q3J1A6 35418573
    596 7vb9:l (3.45) BS02 BPH ? GO:0009772 ... Q3J1A5 35418573
    597 7vb9:l (3.45) BS05 BPH ? GO:0009772 ... Q3J1A5 35418573
    598 7vb9:m (3.45) BS01 BPH ? GO:0009772 ... Q3J1A6 35418573
    599 7vb9:m (3.45) BS03 BPH ? GO:0009772 ... Q3J1A6 35418573
    600 7vnm:L (2.86) BS02 BPH ? GO:0009772 ... Q3J1A5 35418573
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417