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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 726 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1aig:L (2.6) BS03 BPH ? GO:0009772 ... P0C0Y8 9115209
    2 1aig:L (2.6) BS04 BPH ? GO:0009772 ... P0C0Y8 9115209
    3 1aig:M (2.6) BS02 BPH ? GO:0009772 ... P0C0Y9 9115209
    4 1aig:M (2.6) BS03 BPH ? GO:0009772 ... P0C0Y9 9115209
    5 1aig:N (2.6) BS04 BPH ? GO:0009772 ... P0C0Y8 9115209
    6 1aig:N (2.6) BS07 BPH ? GO:0009772 ... P0C0Y8 9115209
    7 1aig:O (2.6) BS03 BPH ? GO:0009772 ... P0C0Y9 9115209
    8 1aig:O (2.6) BS06 BPH ? GO:0009772 ... P0C0Y9 9115209
    9 1aij:L (2.2) BS03 BPH ? GO:0009772 ... P0C0Y8 9115209
    10 1aij:L (2.2) BS04 BPH ? GO:0009772 ... P0C0Y8 9115209
    11 1aij:M (2.2) BS02 BPH ? GO:0009772 ... P0C0Y9 9115209
    12 1aij:M (2.2) BS03 BPH ? GO:0009772 ... P0C0Y9 9115209
    13 1aij:R (2.2) BS03 BPH ? GO:0009772 ... P0C0Y8 9115209
    14 1aij:R (2.2) BS07 BPH ? GO:0009772 ... P0C0Y8 9115209
    15 1aij:S (2.2) BS02 BPH ? GO:0009772 ... P0C0Y9 9115209
    16 1aij:S (2.2) BS06 BPH ? GO:0009772 ... P0C0Y9 9115209
    17 1ds8:L (2.5) BS04 BPH ? GO:0009772 ... P0C0Y8 10677497
    18 1ds8:L (2.5) BS07 BPH ? GO:0009772 ... P0C0Y8 10677497
    19 1ds8:M (2.5) BS03 BPH ? GO:0009772 ... P0C0Y9 10677497
    20 1ds8:M (2.5) BS07 BPH ? GO:0009772 ... P0C0Y9 10677497
    21 1ds8:R (2.5) BS04 BPH ? GO:0009772 ... P0C0Y8 10677497
    22 1ds8:R (2.5) BS07 BPH ? GO:0009772 ... P0C0Y8 10677497
    23 1ds8:S (2.5) BS03 BPH ? GO:0009772 ... P0C0Y9 10677497
    24 1ds8:S (2.5) BS06 BPH ? GO:0009772 ... P0C0Y9 10677497
    25 1dv3:L (2.5) BS03 BPH ? GO:0009772 ... P0C0Y8 10677497
    26 1dv3:L (2.5) BS07 BPH ? GO:0009772 ... P0C0Y8 10677497
    27 1dv3:M (2.5) BS02 BPH ? GO:0009772 ... P0C0Y9 10677497
    28 1dv3:M (2.5) BS06 BPH ? GO:0009772 ... P0C0Y9 10677497
    29 1dv3:R (2.5) BS03 BPH ? GO:0009772 ... P0C0Y8 10677497
    30 1dv3:R (2.5) BS07 BPH ? GO:0009772 ... P0C0Y8 10677497
    31 1dv3:S (2.5) BS02 BPH ? GO:0009772 ... P0C0Y9 10677497
    32 1dv3:S (2.5) BS06 BPH ? GO:0009772 ... P0C0Y9 10677497
    33 1dv6:L (2.5) BS02 BPH ? GO:0009772 ... P0C0Y8 10677497
    34 1dv6:L (2.5) BS07 BPH ? GO:0009772 ... P0C0Y8 10677497
    35 1dv6:M (2.5) BS01 BPH ? GO:0009772 ... P0C0Y9 10677497
    36 1dv6:M (2.5) BS06 BPH ? GO:0009772 ... P0C0Y9 10677497
    37 1dv6:R (2.5) BS03 BPH ? GO:0009772 ... P0C0Y8 10677497
    38 1dv6:R (2.5) BS07 BPH ? GO:0009772 ... P0C0Y8 10677497
    39 1dv6:S (2.5) BS02 BPH ? GO:0009772 ... P0C0Y9 10677497
    40 1dv6:S (2.5) BS06 BPH ? GO:0009772 ... P0C0Y9 10677497
    41 1e14:L (2.7) BS03 BPH ? GO:0009772 ... P0C0Y8 10821666
    42 1e14:L (2.7) BS06 BPH ? GO:0009772 ... P0C0Y8 10821666
    43 1e14:M (2.7) BS02 BPH ? GO:0009772 ... P0C0Y9 10821666
    44 1e14:M (2.7) BS05 BPH ? GO:0009772 ... P0C0Y9 10821666
    45 1e6d:L (2.3) BS03 BPH ? GO:0009772 ... P0C0Y8 11042110
    46 1e6d:L (2.3) BS06 BPH ? GO:0009772 ... P0C0Y8 11042110
    47 1e6d:M (2.3) BS02 BPH ? GO:0009772 ... P0C0Y9 11042110
    48 1e6d:M (2.3) BS05 BPH ? GO:0009772 ... P0C0Y9 11042110
    49 1eys:L (2.2) BS03 BPH N/A GO:0009772 ... N/A 11095707
    50 1eys:L (2.2) BS06 BPH N/A GO:0009772 ... N/A 11095707
    51 1eys:M (2.2) BS02 BPH N/A GO:0009772 ... N/A 11095707
    52 1eys:M (2.2) BS06 BPH N/A GO:0009772 ... N/A 11095707
    53 1f6n:L (2.8) BS04 BPH ? GO:0009772 ... P0C0Y8 11284681
    54 1f6n:L (2.8) BS07 BPH ? GO:0009772 ... P0C0Y8 11284681
    55 1f6n:M (2.8) BS03 BPH ? GO:0009772 ... P0C0Y9 11284681
    56 1f6n:M (2.8) BS06 BPH ? GO:0009772 ... P0C0Y9 11284681
    57 1fnp:L (2.6) BS03 BPH ? GO:0009772 ... P0C0Y8 11284681
    58 1fnp:L (2.6) BS07 BPH ? GO:0009772 ... P0C0Y8 11284681
    59 1fnp:M (2.6) BS02 BPH ? GO:0009772 ... P0C0Y9 11284681
    60 1fnp:M (2.6) BS06 BPH ? GO:0009772 ... P0C0Y9 11284681
    61 1fnq:L (2.6) BS03 BPH ? GO:0009772 ... P0C0Y8 11284681
    62 1fnq:L (2.6) BS07 BPH ? GO:0009772 ... P0C0Y8 11284681
    63 1fnq:M (2.6) BS02 BPH ? GO:0009772 ... P0C0Y9 11284681
    64 1fnq:M (2.6) BS06 BPH ? GO:0009772 ... P0C0Y9 11284681
    65 1jgw:L (2.8) BS03 BPH ? GO:0009772 ... P0C0Y8 11526320
    66 1jgw:L (2.8) BS06 BPH ? GO:0009772 ... P0C0Y8 11526320
    67 1jgw:M (2.8) BS02 BPH ? GO:0009772 ... P0C0Y9 11526320
    68 1jgw:M (2.8) BS06 BPH ? GO:0009772 ... P0C0Y9 11526320
    69 1jgx:L (3.01) BS04 BPH ? GO:0009772 ... P0C0Y8 11526320
    70 1jgx:L (3.01) BS06 BPH ? GO:0009772 ... P0C0Y8 11526320
    71 1jgx:M (3.01) BS03 BPH ? GO:0009772 ... P0C0Y9 11526320
    72 1jgx:M (3.01) BS06 BPH ? GO:0009772 ... P0C0Y9 11526320
    73 1jgy:L (2.7) BS03 BPH ? GO:0009772 ... P0C0Y8 11526320
    74 1jgy:L (2.7) BS06 BPH ? GO:0009772 ... P0C0Y8 11526320
    75 1jgy:M (2.7) BS02 BPH ? GO:0009772 ... P0C0Y9 11526320
    76 1jgy:M (2.7) BS06 BPH ? GO:0009772 ... P0C0Y9 11526320
    77 1jgz:L (2.7) BS03 BPH ? GO:0009772 ... P0C0Y8 11526320
    78 1jgz:L (2.7) BS06 BPH ? GO:0009772 ... P0C0Y8 11526320
    79 1jgz:M (2.7) BS02 BPH ? GO:0009772 ... P0C0Y9 11526320
    80 1jgz:M (2.7) BS06 BPH ? GO:0009772 ... P0C0Y9 11526320
    81 1jh0:L (3.5) BS03 BPH ? GO:0009772 ... P0C0Y8 11526320
    82 1jh0:L (3.5) BS06 BPH ? GO:0009772 ... P0C0Y8 11526320
    83 1jh0:M (3.5) BS02 BPH ? GO:0009772 ... P0C0Y9 11526320
    84 1jh0:M (3.5) BS06 BPH ? GO:0009772 ... P0C0Y9 11526320
    85 1k6l:L (3.1) BS03 BPH ? GO:0009772 ... P0C0Y8 11993994
    86 1k6l:L (3.1) BS07 BPH ? GO:0009772 ... P0C0Y8 11993994
    87 1k6l:M (3.1) BS02 BPH ? GO:0009772 ... P0C0Y9 11993994
    88 1k6l:M (3.1) BS06 BPH ? GO:0009772 ... P0C0Y9 11993994
    89 1k6n:L (3.1) BS03 BPH ? GO:0009772 ... P0C0Y8 11993994
    90 1k6n:L (3.1) BS07 BPH ? GO:0009772 ... P0C0Y8 11993994
    91 1k6n:M (3.1) BS02 BPH ? GO:0009772 ... P0C0Y9 11993994
    92 1k6n:M (3.1) BS06 BPH ? GO:0009772 ... P0C0Y9 11993994
    93 1kby:L (2.5) BS04 BPH ? GO:0009772 ... P0C0Y8 16228547
    94 1kby:L (2.5) BS05 BPH ? GO:0009772 ... P0C0Y8 16228547
    95 1kby:M (2.5) BS03 BPH ? GO:0009772 ... P0C0Y9 16228547
    96 1kby:M (2.5) BS04 BPH ? GO:0009772 ... P0C0Y9 16228547
    97 1kby:M (2.5) BS06 BPH ? GO:0009772 ... P0C0Y9 16228547
    98 1l9b:L (2.4) BS03 BPH ? GO:0009772 ... P0C0Y8 12051924
    99 1l9b:L (2.4) BS06 BPH ? GO:0009772 ... P0C0Y8 12051924
    100 1l9b:M (2.4) BS02 BPH ? GO:0009772 ... P0C0Y9 12051924
    101 1l9b:M (2.4) BS06 BPH ? GO:0009772 ... P0C0Y9 12051924
    102 1l9j:L (3.25) BS03 BPH ? GO:0009772 ... P0C0Y8 12051924
    103 1l9j:L (3.25) BS06 BPH ? GO:0009772 ... P0C0Y8 12051924
    104 1l9j:M (3.25) BS02 BPH ? GO:0009772 ... P0C0Y9 12051924
    105 1l9j:M (3.25) BS06 BPH ? GO:0009772 ... P0C0Y9 12051924
    106 1l9j:R (3.25) BS03 BPH ? GO:0009772 ... P0C0Y8 12051924
    107 1l9j:R (3.25) BS06 BPH ? GO:0009772 ... P0C0Y8 12051924
    108 1l9j:S (3.25) BS02 BPH ? GO:0009772 ... P0C0Y9 12051924
    109 1l9j:S (3.25) BS06 BPH ? GO:0009772 ... P0C0Y9 12051924
    110 1m3x:L (2.55) BS04 BPH ? GO:0009772 ... P0C0Y8 12167672
    111 1m3x:M (2.55) BS03 BPH ? GO:0009772 ... P0C0Y9 12167672
    112 1m3x:M (2.55) BS06 BPH ? GO:0009772 ... P0C0Y9 12167672
    113 1mps:L (2.55) BS03 BPH ? GO:0009772 ... P0C0Y8 9537989
    114 1mps:L (2.55) BS04 BPH ? GO:0009772 ... P0C0Y8 9537989
    115 1mps:M (2.55) BS02 BPH ? GO:0009772 ... P0C0Y9 9537989
    116 1mps:M (2.55) BS03 BPH ? GO:0009772 ... P0C0Y9 9537989
    117 1ogv:L (2.35) BS03 BPH ? GO:0009772 ... P0C0Y8 12899837
    118 1ogv:L (2.35) BS05 BPH ? GO:0009772 ... P0C0Y8 12899837
    119 1ogv:M (2.35) BS02 BPH ? GO:0009772 ... P0C0Y9 12899837
    120 1ogv:M (2.35) BS05 BPH ? GO:0009772 ... P0C0Y9 12899837
    121 1pcr:L (2.65) BS04 BPH ? GO:0009772 ... P0C0Y8 7866744
    122 1pcr:L (2.65) BS07 BPH ? GO:0009772 ... P0C0Y8 7866744
    123 1pcr:M (2.65) BS03 BPH ? GO:0009772 ... P0C0Y9 7866744
    124 1pcr:M (2.65) BS06 BPH ? GO:0009772 ... P0C0Y9 7866744
    125 1pss:L (3.0) BS02 BPH ? GO:0009772 ... P0C0Y8 8161514
    126 1pss:L (3.0) BS07 BPH ? GO:0009772 ... P0C0Y8 8161514
    127 1pss:M (3.0) BS01 BPH ? GO:0009772 ... P0C0Y9 8161514
    128 1pss:M (3.0) BS06 BPH ? GO:0009772 ... P0C0Y9 8161514
    129 1pst:L (3.0) BS03 BPH ? GO:0009772 ... P0C0Y8 8161514
    130 1pst:L (3.0) BS07 BPH ? GO:0009772 ... P0C0Y8 8161514
    131 1pst:M (3.0) BS02 BPH ? GO:0009772 ... P0C0Y9 8161514
    132 1pst:M (3.0) BS06 BPH ? GO:0009772 ... P0C0Y9 8161514
    133 1pst:M (3.0) BS07 BPH ? GO:0009772 ... P0C0Y9 8161514
    134 1pyh:B (4.8) BS01 BPH N/A N/A N/A 14671305
    135 1qov:L (2.1) BS05 BPH ? GO:0009772 ... P0C0Y8 10611277
    136 1qov:L (2.1) BS06 BPH ? GO:0009772 ... P0C0Y8 10611277
    137 1qov:M (2.1) BS04 BPH ? GO:0009772 ... P0C0Y9 10611277
    138 1qov:M (2.1) BS05 BPH ? GO:0009772 ... P0C0Y9 10611277
    139 1rg5:L (2.5) BS03 BPH ? GO:0009772 ... P0C0Y8 15130469
    140 1rg5:M (2.5) BS02 BPH ? GO:0009772 ... P0C0Y9 15130469
    141 1rg5:M (2.5) BS06 BPH ? GO:0009772 ... P0C0Y9 15130469
    142 1rgn:L (2.8) BS03 BPH ? GO:0009772 ... P0C0Y8 15130469
    143 1rgn:L (2.8) BS07 BPH ? GO:0009772 ... P0C0Y8 15130469
    144 1rgn:M (2.8) BS02 BPH ? GO:0009772 ... P0C0Y9 15130469
    145 1rgn:M (2.8) BS06 BPH ? GO:0009772 ... P0C0Y9 15130469
    146 1rqk:L (2.7) BS03 BPH ? GO:0009772 ... P0C0Y8 15130469
    147 1rqk:L (2.7) BS07 BPH ? GO:0009772 ... P0C0Y8 15130469
    148 1rqk:M (2.7) BS02 BPH ? GO:0009772 ... P0C0Y9 15130469
    149 1rqk:M (2.7) BS06 BPH ? GO:0009772 ... P0C0Y9 15130469
    150 1rvj:L (2.75) BS03 BPH ? GO:0009772 ... P0C0Y8 15062092
    151 1rvj:L (2.75) BS07 BPH ? GO:0009772 ... P0C0Y8 15062092
    152 1rvj:M (2.75) BS02 BPH ? GO:0009772 ... P0C0Y9 15062092
    153 1rvj:M (2.75) BS07 BPH ? GO:0009772 ... P0C0Y9 15062092
    154 1ry5:L (2.1) BS04 BPH ? GO:0009772 ... P0C0Y8 15062092
    155 1ry5:L (2.1) BS07 BPH ? GO:0009772 ... P0C0Y8 15062092
    156 1ry5:M (2.1) BS03 BPH ? GO:0009772 ... P0C0Y9 15062092
    157 1ry5:M (2.1) BS06 BPH ? GO:0009772 ... P0C0Y9 15062092
    158 1rzh:L (1.8) BS03 BPH ? GO:0009772 ... P0C0Y8 15062092
    159 1rzh:L (1.8) BS07 BPH ? GO:0009772 ... P0C0Y8 15062092
    160 1rzh:M (1.8) BS02 BPH ? GO:0009772 ... P0C0Y9 15062092
    161 1rzh:M (1.8) BS06 BPH ? GO:0009772 ... P0C0Y9 15062092
    162 1rzz:L (2.4) BS06 BPH ? GO:0009772 ... P0C0Y8 15062092
    163 1rzz:L (2.4) BS07 BPH ? GO:0009772 ... P0C0Y8 15062092
    164 1rzz:M (2.4) BS06 BPH ? GO:0009772 ... P0C0Y9 15062092
    165 1rzz:M (2.4) BS07 BPH ? GO:0009772 ... P0C0Y9 15062092
    166 1rzz:R (2.4) BS02 BPH ? GO:0009772 ... P0C0Y8 15062092
    167 1rzz:R (2.4) BS07 BPH ? GO:0009772 ... P0C0Y8 15062092
    168 1rzz:S (2.4) BS01 BPH ? GO:0009772 ... P0C0Y9 15062092
    169 1rzz:S (2.4) BS06 BPH ? GO:0009772 ... P0C0Y9 15062092
    170 1s00:L (2.6) BS04 BPH ? GO:0009772 ... P0C0Y8 15062092
    171 1s00:L (2.6) BS07 BPH ? GO:0009772 ... P0C0Y8 15062092
    172 1s00:M (2.6) BS03 BPH ? GO:0009772 ... P0C0Y9 15062092
    173 1s00:M (2.6) BS06 BPH ? GO:0009772 ... P0C0Y9 15062092
    174 1s00:R (2.6) BS02 BPH ? GO:0009772 ... P0C0Y8 15062092
    175 1s00:R (2.6) BS07 BPH ? GO:0009772 ... P0C0Y8 15062092
    176 1s00:S (2.6) BS01 BPH ? GO:0009772 ... P0C0Y9 15062092
    177 1s00:S (2.6) BS06 BPH ? GO:0009772 ... P0C0Y9 15062092
    178 1yf6:L (2.25) BS03 BPH ? GO:0009772 ... P0C0Y8 15865437
    179 1yf6:M (2.25) BS02 BPH ? GO:0009772 ... P0C0Y9 15865437
    180 1yst:L (3.0) BS03 BPH ? GO:0009772 ... P0C0Y8 15299304
    181 1yst:L (3.0) BS08 BPH ? GO:0009772 ... P0C0Y8 15299304
    182 1yst:M (3.0) BS02 BPH ? GO:0009772 ... P0C0Y9 15299304
    183 1yst:M (3.0) BS06 BPH ? GO:0009772 ... P0C0Y9 15299304
    184 1z9j:A (4.5) BS03 BPH ? GO:0009772 ... P0C0Y8 15895982
    185 1z9j:A (4.5) BS07 BPH ? GO:0009772 ... P0C0Y8 15895982
    186 1z9j:B (4.5) BS02 BPH ? GO:0009772 ... P0C0Y9 15895982
    187 1z9j:B (4.5) BS07 BPH ? GO:0009772 ... P0C0Y9 15895982
    188 1z9k:A (4.6) BS03 BPH ? GO:0009772 ... P0C0Y8 15895982
    189 1z9k:A (4.6) BS07 BPH ? GO:0009772 ... P0C0Y8 15895982
    190 1z9k:B (4.6) BS01 BPH ? GO:0009772 ... P0C0Y9 15895982
    191 1z9k:B (4.6) BS05 BPH ? GO:0009772 ... P0C0Y9 15895982
    192 2bnp:A (2.7) BS03 BPH ? GO:0009772 ... P0C0Y8 15937492
    193 2bnp:A (2.7) BS06 BPH ? GO:0009772 ... P0C0Y8 15937492
    194 2bnp:B (2.7) BS02 BPH ? GO:0009772 ... P0C0Y9 15937492
    195 2bnp:B (2.7) BS05 BPH ? GO:0009772 ... P0C0Y9 15937492
    196 2bns:A (2.5) BS03 BPH ? GO:0009772 ... P0C0Y8 15937492
    197 2bns:A (2.5) BS06 BPH ? GO:0009772 ... P0C0Y8 15937492
    198 2bns:B (2.5) BS02 BPH ? GO:0009772 ... P0C0Y9 15937492
    199 2bns:B (2.5) BS05 BPH ? GO:0009772 ... P0C0Y9 15937492
    200 2boz:L (2.4) BS03 BPH ? GO:0009772 ... P0C0Y8 15908429
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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