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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 183 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1dxr:L (2.0) BS03 BPB ? GO:0009772 ... P06009 11005826
    2 1dxr:L (2.0) BS08 BPB ? GO:0009772 ... P06009 11005826
    3 1dxr:M (2.0) BS02 BPB ? GO:0009772 ... P06010 11005826
    4 1dxr:M (2.0) BS07 BPB ? GO:0009772 ... P06010 11005826
    5 1prc:L (2.3) BS03 BPB ? GO:0009772 ... P06009 7877166
    6 1prc:L (2.3) BS07 BPB ? GO:0009772 ... P06009 7877166
    7 1prc:M (2.3) BS02 BPB ? GO:0009772 ... P06010 7877166
    8 1prc:M (2.3) BS06 BPB ? GO:0009772 ... P06010 7877166
    9 1r2c:L (2.86) BS03 BPB ? GO:0009772 ... P06009 15073325
    10 1r2c:L (2.86) BS07 BPB ? GO:0009772 ... P06009 15073325
    11 1r2c:M (2.86) BS03 BPB ? GO:0009772 ... P06010 15073325
    12 1r2c:M (2.86) BS07 BPB ? GO:0009772 ... P06010 15073325
    13 1umx:L (2.8) BS03 BPB ? GO:0009772 ... P0C0Y8 14741581
    14 1umx:L (2.8) BS06 BPB ? GO:0009772 ... P0C0Y8 14741581
    15 1umx:M (2.8) BS02 BPB ? GO:0009772 ... P0C0Y9 14741581
    16 1umx:M (2.8) BS06 BPB ? GO:0009772 ... P0C0Y9 14741581
    17 1vrn:L (2.2) BS03 BPB ? GO:0009772 ... P06009 15858271
    18 1vrn:L (2.2) BS07 BPB ? GO:0009772 ... P06009 15858271
    19 1vrn:M (2.2) BS02 BPB ? GO:0009772 ... P06010 15858271
    20 1vrn:M (2.2) BS06 BPB ? GO:0009772 ... P06010 15858271
    21 2i5n:L (1.96) BS04 BPB ? GO:0009772 ... P06009 17159147
    22 2i5n:L (1.96) BS08 BPB ? GO:0009772 ... P06009 17159147
    23 2i5n:M (1.96) BS03 BPB ? GO:0009772 ... P06010 17159147
    24 2i5n:M (1.96) BS08 BPB ? GO:0009772 ... P06010 17159147
    25 2jbl:L (2.4) BS03 BPB ? GO:0009772 ... P06009 17337272
    26 2jbl:L (2.4) BS06 BPB ? GO:0009772 ... P06009 17337272
    27 2jbl:M (2.4) BS02 BPB ? GO:0009772 ... P06010 17337272
    28 2jbl:M (2.4) BS05 BPB ? GO:0009772 ... P06010 17337272
    29 2prc:L (2.45) BS03 BPB ? GO:0009772 ... P06009 9351808
    30 2prc:L (2.45) BS07 BPB ? GO:0009772 ... P06009 9351808
    31 2prc:M (2.45) BS02 BPB ? GO:0009772 ... P06010 9351808
    32 2prc:M (2.45) BS06 BPB ? GO:0009772 ... P06010 9351808
    33 2wjm:L (1.95) BS03 BPB ? GO:0009772 ... P06009 19743880
    34 2wjm:L (1.95) BS08 BPB ? GO:0009772 ... P06009 19743880
    35 2wjm:M (1.95) BS02 BPB ? GO:0009772 ... P06010 19743880
    36 2wjm:M (1.95) BS06 BPB ? GO:0009772 ... P06010 19743880
    37 2wjn:L (1.86) BS03 BPB ? GO:0009772 ... P06009 19743880
    38 2wjn:L (1.86) BS08 BPB ? GO:0009772 ... P06009 19743880
    39 2wjn:M (1.86) BS02 BPB ? GO:0009772 ... P06010 19743880
    40 2wjn:M (1.86) BS06 BPB ? GO:0009772 ... P06010 19743880
    41 2x5u:L (3.0) BS03 BPB ? GO:0009772 ... P06009 20431017
    42 2x5u:L (3.0) BS05 BPB ? GO:0009772 ... P06009 20431017
    43 2x5u:M (3.0) BS02 BPB ? GO:0009772 ... P06010 20431017
    44 2x5u:M (3.0) BS05 BPB ? GO:0009772 ... P06010 20431017
    45 2x5v:L (3.0) BS03 BPB ? GO:0009772 ... P06009 20431017
    46 2x5v:L (3.0) BS04 BPB ? GO:0009772 ... P06009 20431017
    47 2x5v:M (3.0) BS02 BPB ? GO:0009772 ... P06010 20431017
    48 2x5v:M (3.0) BS05 BPB ? GO:0009772 ... P06010 20431017
    49 3d38:L (3.21) BS03 BPB ? GO:0009772 ... P06009 18831551
    50 3d38:L (3.21) BS08 BPB ? GO:0009772 ... P06009 18831551
    51 3d38:M (3.21) BS02 BPB ? GO:0009772 ... P06010 18831551
    52 3d38:M (3.21) BS08 BPB ? GO:0009772 ... P06010 18831551
    53 3g7f:L (2.5) BS03 BPB ? GO:0009772 ... P06009 19539602
    54 3g7f:L (2.5) BS08 BPB ? GO:0009772 ... P06009 19539602
    55 3g7f:M (2.5) BS02 BPB ? GO:0009772 ... P06010 19539602
    56 3g7f:M (2.5) BS07 BPB ? GO:0009772 ... P06010 19539602
    57 3g7f:M (2.5) BS08 BPB ? GO:0009772 ... P06010 19539602
    58 3prc:L (2.4) BS03 BPB ? GO:0009772 ... P06009 9351808
    59 3prc:L (2.4) BS06 BPB ? GO:0009772 ... P06009 9351808
    60 3prc:M (2.4) BS02 BPB ? GO:0009772 ... P06010 9351808
    61 3prc:M (2.4) BS06 BPB ? GO:0009772 ... P06010 9351808
    62 3t6d:L (1.95) BS03 BPB ? GO:0009772 ... P06009 22054235
    63 3t6d:L (1.95) BS09 BPB ? GO:0009772 ... P06009 22054235
    64 3t6d:M (1.95) BS02 BPB ? GO:0009772 ... P06010 22054235
    65 3t6d:M (1.95) BS07 BPB ? GO:0009772 ... P06010 22054235
    66 3t6e:L (1.92) BS03 BPB ? GO:0009772 ... P06009 22054235
    67 3t6e:L (1.92) BS08 BPB ? GO:0009772 ... P06009 22054235
    68 3t6e:M (1.92) BS02 BPB ? GO:0009772 ... P06010 22054235
    69 3t6e:M (1.92) BS06 BPB ? GO:0009772 ... P06010 22054235
    70 4ac5:L (8.2) BS03 BPB ? GO:0009772 ... P06009 22286383
    71 4ac5:L (8.2) BS05 BPB ? GO:0009772 ... P06009 22286383
    72 4ac5:M (8.2) BS02 BPB ? GO:0009772 ... P06010 22286383
    73 4ac5:M (8.2) BS05 BPB ? GO:0009772 ... P06010 22286383
    74 4cas:B (3.5) BS04 BPB ? GO:0009772 ... P06009 24352554
    75 4cas:B (3.5) BS08 BPB ? GO:0009772 ... P06009 24352554
    76 4cas:C (3.5) BS03 BPB ? GO:0009772 ... P06010 24352554
    77 4cas:C (3.5) BS06 BPB ? GO:0009772 ... P06010 24352554
    78 5m7j:B (3.5) BS04 BPB ? GO:0009772 ... P06009 28248658
    79 5m7j:B (3.5) BS08 BPB ? GO:0009772 ... P06009 28248658
    80 5m7j:C (3.5) BS03 BPB ? GO:0009772 ... P06010 28248658
    81 5m7j:C (3.5) BS07 BPB ? GO:0009772 ... P06010 28248658
    82 5m7k:B (3.5) BS04 BPB ? GO:0009772 ... P06009 28248658
    83 5m7k:B (3.5) BS07 BPB ? GO:0009772 ... P06009 28248658
    84 5m7k:C (3.5) BS03 BPB ? GO:0009772 ... P06010 28248658
    85 5m7k:C (3.5) BS06 BPB ? GO:0009772 ... P06010 28248658
    86 5m7l:B (3.6) BS04 BPB ? GO:0009772 ... P06009 28248658
    87 5m7l:B (3.6) BS07 BPB ? GO:0009772 ... P06009 28248658
    88 5m7l:C (3.6) BS03 BPB ? GO:0009772 ... P06010 28248658
    89 5m7l:C (3.6) BS06 BPB ? GO:0009772 ... P06010 28248658
    90 5nj4:L (2.4) BS03 BPB ? GO:0009772 ... P06009 28781082
    91 5nj4:L (2.4) BS06 BPB ? GO:0009772 ... P06009 28781082
    92 5nj4:M (2.4) BS02 BPB ? GO:0009772 ... P06010 28781082
    93 5nj4:M (2.4) BS07 BPB ? GO:0009772 ... P06010 28781082
    94 5o4c:L (2.8) BS03 BPB ? GO:0009772 ... P06009 28781082
    95 5o4c:L (2.8) BS07 BPB ? GO:0009772 ... P06009 28781082
    96 5o4c:M (2.8) BS02 BPB ? GO:0009772 ... P06010 28781082
    97 5o4c:M (2.8) BS07 BPB ? GO:0009772 ... P06010 28781082
    98 5o64:L (3.3) BS03 BPB ? GO:0009772 ... P06009 28781082
    99 5o64:L (3.3) BS07 BPB ? GO:0009772 ... P06009 28781082
    100 5o64:M (3.3) BS02 BPB ? GO:0009772 ... P06010 28781082
    101 5o64:M (3.3) BS07 BPB ? GO:0009772 ... P06010 28781082
    102 5prc:L (2.35) BS03 BPB ? GO:0009772 ... P06009 10024457
    103 5prc:L (2.35) BS07 BPB ? GO:0009772 ... P06009 10024457
    104 5prc:M (2.35) BS02 BPB ? GO:0009772 ... P06010 10024457
    105 5prc:M (2.35) BS06 BPB ? GO:0009772 ... P06010 10024457
    106 6et5:L (2.87) BS03 BPB ? GO:0009772 ... P06009 29618818
    107 6et5:L (2.87) BS07 BPB ? GO:0009772 ... P06009 29618818
    108 6et5:M (2.87) BS02 BPB ? GO:0009772 ... P06010 29618818
    109 6et5:M (2.87) BS06 BPB ? GO:0009772 ... P06010 29618818
    110 6prc:L (2.3) BS03 BPB ? GO:0009772 ... P06009 10024457
    111 6prc:L (2.3) BS07 BPB ? GO:0009772 ... P06009 10024457
    112 6prc:M (2.3) BS02 BPB ? GO:0009772 ... P06010 10024457
    113 6prc:M (2.3) BS06 BPB ? GO:0009772 ... P06010 10024457
    114 6zhw:L (2.8) BS03 BPB ? GO:0009772 ... P06009 33268896
    115 6zhw:L (2.8) BS05 BPB ? GO:0009772 ... P06009 33268896
    116 6zhw:M (2.8) BS02 BPB ? GO:0009772 ... P06010 33268896
    117 6zhw:M (2.8) BS04 BPB ? GO:0009772 ... P06010 33268896
    118 6zi4:L (2.8) BS03 BPB ? GO:0009772 ... P06009 33268896
    119 6zi4:L (2.8) BS07 BPB ? GO:0009772 ... P06009 33268896
    120 6zi4:M (2.8) BS02 BPB ? GO:0009772 ... P06010 33268896
    121 6zi4:M (2.8) BS07 BPB ? GO:0009772 ... P06010 33268896
    122 6zi5:L (2.8) BS03 BPB ? GO:0009772 ... P06009 33268896
    123 6zi5:L (2.8) BS07 BPB ? GO:0009772 ... P06009 33268896
    124 6zi5:M (2.8) BS02 BPB ? GO:0009772 ... P06010 33268896
    125 6zi5:M (2.8) BS07 BPB ? GO:0009772 ... P06010 33268896
    126 6zi6:L (2.8) BS03 BPB ? GO:0009772 ... P06009 33268896
    127 6zi6:L (2.8) BS05 BPB ? GO:0009772 ... P06009 33268896
    128 6zi6:M (2.8) BS02 BPB ? GO:0009772 ... P06010 33268896
    129 6zi6:M (2.8) BS04 BPB ? GO:0009772 ... P06010 33268896
    130 6zi9:L (2.8) BS03 BPB ? GO:0009772 ... P06009 33268896
    131 6zi9:L (2.8) BS07 BPB ? GO:0009772 ... P06009 33268896
    132 6zi9:M (2.8) BS02 BPB ? GO:0009772 ... P06010 33268896
    133 6zi9:M (2.8) BS07 BPB ? GO:0009772 ... P06010 33268896
    134 6zia:L (2.8) BS03 BPB ? GO:0009772 ... P06009 33268896
    135 6zia:L (2.8) BS05 BPB ? GO:0009772 ... P06009 33268896
    136 6zia:M (2.8) BS02 BPB ? GO:0009772 ... P06010 33268896
    137 6zia:M (2.8) BS04 BPB ? GO:0009772 ... P06010 33268896
    138 6zid:L (2.8) BS03 BPB ? GO:0009772 ... P06009 33268896
    139 6zid:L (2.8) BS07 BPB ? GO:0009772 ... P06009 33268896
    140 6zid:M (2.8) BS02 BPB ? GO:0009772 ... P06010 33268896
    141 6zid:M (2.8) BS07 BPB ? GO:0009772 ... P06010 33268896
    142 7prc:L (2.65) BS03 BPB ? GO:0009772 ... P06009 10024457
    143 7prc:L (2.65) BS04 BPB ? GO:0009772 ... P06009 10024457
    144 7prc:M (2.65) BS02 BPB ? GO:0009772 ... P06010 10024457
    145 7prc:M (2.65) BS03 BPB ? GO:0009772 ... P06010 10024457
    146 7q7p:LLL (2.4) BS03 BPB ? GO:0009772 ... P06009 35647917
    147 7q7p:LLL (2.4) BS09 BPB ? GO:0009772 ... P06009 35647917
    148 7q7p:MMM (2.4) BS02 BPB ? GO:0009772 ... P06010 35647917
    149 7q7p:MMM (2.4) BS08 BPB ? GO:0009772 ... P06010 35647917
    150 7q7q:LLL (2.25) BS03 BPB ? GO:0009772 ... P06009 35647917
    151 7q7q:LLL (2.25) BS08 BPB ? GO:0009772 ... P06009 35647917
    152 7q7q:MMM (2.25) BS02 BPB ? GO:0009772 ... P06010 35647917
    153 7q7q:MMM (2.25) BS07 BPB ? GO:0009772 ... P06010 35647917
    154 7va9:L (3.08) BS02 BPB ? GO:0009772 ... Q3J1A5 35418573
    155 7va9:L (3.08) BS05 BPB ? GO:0009772 ... Q3J1A5 35418573
    156 7va9:M (3.08) BS01 BPB ? GO:0009772 ... Q3J1A6 35418573
    157 7va9:M (3.08) BS03 BPB ? GO:0009772 ... Q3J1A6 35418573
    158 7va9:l (3.08) BS02 BPB ? GO:0009772 ... Q3J1A5 35418573
    159 7va9:l (3.08) BS05 BPB ? GO:0009772 ... Q3J1A5 35418573
    160 7va9:m (3.08) BS01 BPB ? GO:0009772 ... Q3J1A6 35418573
    161 7va9:m (3.08) BS03 BPB ? GO:0009772 ... Q3J1A6 35418573
    162 7vny:L (2.79) BS03 BPB ? GO:0009772 ... Q3J1A5 35418573
    163 7vny:L (2.79) BS08 BPB ? GO:0009772 ... Q3J1A5 35418573
    164 7vny:M (2.79) BS02 BPB ? GO:0009772 ... Q3J1A6 35418573
    165 7vny:M (2.79) BS06 BPB ? GO:0009772 ... Q3J1A6 35418573
    166 7vot:L (2.9) BS03 BPB ? GO:0009772 ... Q3J1A5 35418573
    167 7vot:L (2.9) BS08 BPB ? GO:0009772 ... Q3J1A5 35418573
    168 7vot:M (2.9) BS03 BPB ? GO:0009772 ... Q3J1A6 35418573
    169 7vot:M (2.9) BS07 BPB ? GO:0009772 ... Q3J1A6 35418573
    170 7vot:l (2.9) BS03 BPB ? GO:0009772 ... Q3J1A5 35418573
    171 7vot:l (2.9) BS08 BPB ? GO:0009772 ... Q3J1A5 35418573
    172 7vot:m (2.9) BS03 BPB ? GO:0009772 ... Q3J1A6 35418573
    173 7vot:m (2.9) BS07 BPB ? GO:0009772 ... Q3J1A6 35418573
    174 8c3f:L (2.6) BS02 BPB ? GO:0009772 ... Q3J1A5 36837660
    175 8c3f:L (2.6) BS06 BPB ? GO:0009772 ... Q3J1A5 36837660
    176 8c3f:M (2.6) BS01 BPB ? GO:0009772 ... Q3J1A6 36837660
    177 8c3f:M (2.6) BS05 BPB ? GO:0009772 ... Q3J1A6 36837660
    178 8j5p:L (3.1) BS03 BPB ? GO:0009772 ... A7NQE8 37737710
    179 8j5p:L (3.1) BS05 BPB ? GO:0009772 ... A7NQE8 37737710
    180 8j5p:L (3.1) BS08 BPB ? GO:0009772 ... A7NQE8 37737710
    181 8j5p:M (3.1) BS02 BPB ? GO:0009772 ... A7NQE8 37737710
    182 8j5p:M (3.1) BS03 BPB ? GO:0009772 ... A7NQE8 37737710
    183 8j5p:M (3.1) BS07 BPB ? GO:0009772 ... A7NQE8 37737710
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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