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BioLiP
Download all results in tab-seperated text for 44 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1eix:A (2.5) BS01 BMQ 4.1.1.23 GO:0004590 ... P08244 10757968 MOAD: Ki=8.8pM
    PDBbind: -logKd/Ki=11.06, Ki=8.8pM
    2 1eix:A (2.5) BS02 BMQ 4.1.1.23 GO:0004590 ... P08244 10757968 MOAD: Ki=8.8pM
    PDBbind: -logKd/Ki=11.06, Ki=8.8pM
    3 1eix:B (2.5) BS01 BMQ 4.1.1.23 GO:0004590 ... P08244 10757968 MOAD: Ki=8.8pM
    PDBbind: -logKd/Ki=11.06, Ki=8.8pM
    4 1eix:B (2.5) BS02 BMQ 4.1.1.23 GO:0004590 ... P08244 10757968 MOAD: Ki=8.8pM
    PDBbind: -logKd/Ki=11.06, Ki=8.8pM
    5 1eix:C (2.5) BS01 BMQ 4.1.1.23 GO:0004590 ... P08244 10757968 MOAD: Ki=8.8pM
    6 1eix:C (2.5) BS02 BMQ 4.1.1.23 GO:0004590 ... P08244 10757968 MOAD: Ki=8.8pM
    7 1eix:D (2.5) BS01 BMQ 4.1.1.23 GO:0004590 ... P08244 10757968 MOAD: Ki=8.8pM
    8 1eix:D (2.5) BS02 BMQ 4.1.1.23 GO:0004590 ... P08244 10757968 MOAD: Ki=8.8pM
    9 3lht:A (1.35) BS01 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    10 3lht:A (1.35) BS02 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    11 3lht:B (1.35) BS01 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    12 3lht:B (1.35) BS02 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    13 3lhu:A (1.6) BS01 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    14 3lhu:A (1.6) BS02 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    15 3lhu:B (1.6) BS01 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    16 3lhu:B (1.6) BS02 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    17 3lhv:A (1.35) BS01 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    18 3lhv:A (1.35) BS02 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    19 3lhv:B (1.35) BS01 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    20 3lhv:B (1.35) BS02 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    21 3lhv:C (1.35) BS01 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    22 3lhv:C (1.35) BS02 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    23 3lhv:D (1.35) BS01 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    24 3lhv:D (1.35) BS02 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    25 3lhw:A (1.35) BS01 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    26 3lhw:A (1.35) BS02 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    27 3lhw:B (1.35) BS01 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    28 3lhw:B (1.35) BS02 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    29 3lhy:A (1.4) BS01 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    30 3lhy:A (1.4) BS02 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    31 3lhy:B (1.4) BS01 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    32 3lhy:B (1.4) BS02 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    33 3lhz:A (1.4) BS01 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    34 3lhz:A (1.4) BS02 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    35 3lhz:B (1.4) BS01 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    36 3lhz:B (1.4) BS02 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    37 3li0:A (1.5) BS01 BMQ 4.1.1.23 GO:0004590 ... O26232 23030629
    38 3li0:A (1.5) BS02 BMQ 4.1.1.23 GO:0004590 ... O26232 23030629
    39 3li0:B (1.5) BS01 BMQ 4.1.1.23 GO:0004590 ... O26232 23030629
    40 3li0:B (1.5) BS02 BMQ 4.1.1.23 GO:0004590 ... O26232 23030629
    41 3li1:A (1.35) BS01 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    42 3li1:A (1.35) BS02 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    43 3li1:B (1.35) BS01 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    44 3li1:B (1.35) BS02 BMQ 4.1.1.23 GO:0004590 ... O26232 20369850
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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