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BioLiP
Download all results in tab-seperated text for 294 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 6hrk:C (2.52) BS01 BLA ? GO:0015979 ... K9TY40 N/A
    202 6hrk:D (2.52) BS01 BLA ? GO:0015979 ... K9TY40 N/A
    203 6kmd:A (2.2) BS01 BLA 1.3.7.4 GO:0010024 ... Q588D6 31822504
    204 6kme:A (1.95) BS01 BLA 1.3.7.4 GO:0010024 ... Q588D6 31822504
    205 6ndo:A (3.58) BS01 BLA ? GO:0006355 ... A0A0H2XCS3 33864705
    206 6ndo:B (3.58) BS01 BLA ? GO:0006355 ... A0A0H2XCS3 33864705
    207 6ndp:A (3.89) BS01 BLA ? GO:0006355 ... A0A0H2XCS3 33864705
    208 6ndp:B (3.89) BS01 BLA ? GO:0006355 ... A0A0H2XCS3 33864705
    209 6pl0:A (2.96) BS01 BLA ? GO:0006355 ... A0A0H2XCS3 34818032
    210 6pl0:B (2.96) BS01 BLA ? GO:0006355 ... A0A0H2XCS3 34818032
    211 6ple:A (2.5) BS01 BLA 1.14.99.57 GO:0004392 ... P9WKH3 31638374
    212 6ple:A (2.5) BS02 BLA 1.14.99.57 GO:0004392 ... P9WKH3 31638374
    213 6ple:A (2.5) BS03 BLA 1.14.99.57 GO:0004392 ... P9WKH3 31638374
    214 6ple:B (2.5) BS01 BLA 1.14.99.57 GO:0004392 ... P9WKH3 31638374
    215 6ple:B (2.5) BS02 BLA 1.14.99.57 GO:0004392 ... P9WKH3 31638374
    216 6zoz:A (3.5) BS01 BLA ? GO:0005515 ... P0DTC2 32737467
    217 6zoz:B (3.5) BS01 BLA ? GO:0005515 ... P0DTC2 32737467
    218 6zoz:C (3.5) BS01 BLA ? GO:0005515 ... P0DTC2 32737467
    219 6zp2:A (3.1) BS01 BLA ? GO:0005515 ... P0DTC2 32737467
    220 6zp2:B (3.1) BS01 BLA ? GO:0005515 ... P0DTC2 32737467
    221 6zp2:C (3.1) BS02 BLA ? GO:0005515 ... P0DTC2 32737467
    222 7b62:A (1.82) BS01 BLA ? N/A P0DTC2 33888467
    223 7e2s:A (1.05) BS01 BLA ? GO:0046906 ... P72583 34382282
    224 7l59:A (2.68) BS01 BLA ? GO:0006355 ... A0A0H2XCS3 34818032
    225 7l5a:A (2.95) BS01 BLA ? GO:0006355 ... A0A0H2XCS3 34818032
    226 7lsd:A (1.7) BS01 BLA N/A N/A N/A N/A
    227 7lsd:B (1.7) BS01 BLA N/A N/A N/A N/A
    228 7lsd:C (1.7) BS01 BLA N/A N/A N/A N/A
    229 7lsd:D (1.7) BS01 BLA N/A N/A N/A N/A
    230 7nt9:A (3.36) BS01 BLA ? GO:0016020 ... P0DTC2 33888467
    231 7nt9:B (3.36) BS01 BLA ? GO:0016020 ... P0DTC2 33888467
    232 7nt9:C (3.36) BS01 BLA ? GO:0016020 ... P0DTC2 33888467
    233 7nta:A (3.5) BS01 BLA ? GO:0016020 ... P0DTC2 33888467
    234 7nta:B (3.5) BS01 BLA ? GO:0016020 ... P0DTC2 33888467
    235 7nta:C (3.5) BS01 BLA ? GO:0016020 ... P0DTC2 33888467
    236 7ntc:A (3.6) BS01 BLA ? GO:0016020 ... P0DTC2 33888467
    237 7ntc:B (3.6) BS01 BLA ? GO:0016020 ... P0DTC2 33888467
    238 7o2y:AAA (2.5) BS01 BLA ? GO:0000302 ... A0A1D5B367 35919616
    239 7o3k:A (2.75) BS01 BLA ? GO:0000302 ... A0A1D5B367 35919616
    240 7rbw:A (2.05) BS01 BLA ? GO:0004867 ... A0A7D7FB99 34798132
    241 7rbw:B (2.05) BS01 BLA ? GO:0004867 ... A0A7D7FB99 34798132
    242 7vnl:A (1.93) BS01 BLA ? GO:0000302 ... A0A1D5B367 35020202
    243 7vnl:B (1.93) BS01 BLA ? GO:0000302 ... A0A1D5B367 35020202
    244 7vns:A (1.95) BS01 BLA ? GO:0000302 ... A0A1D5B367 35020202
    245 7vns:B (1.95) BS01 BLA ? GO:0000302 ... A0A1D5B367 35020202
    246 7xtz:A (2.8) BS01 BLA ? GO:0016020 ... P0DTC2 35905112
    247 7xtz:B (2.8) BS02 BLA ? GO:0016020 ... P0DTC2 35905112
    248 7xtz:C (2.8) BS03 BLA ? GO:0016020 ... P0DTC2 35905112
    249 7xu0:A (2.9) BS02 BLA ? GO:0016020 ... P0DTC2 35905112
    250 7xu0:B (2.9) BS02 BLA ? GO:0016020 ... P0DTC2 35905112
    251 7xu0:C (2.9) BS02 BLA ? GO:0016020 ... P0DTC2 35905112
    252 7xu1:A (3.0) BS03 BLA ? GO:0005515 ... P0DTC2 35905112
    253 7xu1:B (3.0) BS02 BLA ? GO:0005515 ... P0DTC2 35905112
    254 7xu1:C (3.0) BS01 BLA ? GO:0005515 ... P0DTC2 35905112
    255 7xu2:A (3.2) BS01 BLA ? GO:0016020 ... P0DTC2 35905112
    256 7xu2:B (3.2) BS02 BLA ? GO:0016020 ... P0DTC2 35905112
    257 7xu2:C (3.2) BS02 BLA ? GO:0016020 ... P0DTC2 35905112
    258 7xu3:A (3.0) BS01 BLA ? GO:0016020 ... P0DTC2 35905112
    259 7xu3:B (3.0) BS01 BLA ? GO:0016020 ... P0DTC2 35905112
    260 7xu3:C (3.0) BS01 BLA ? GO:0016020 ... P0DTC2 35905112
    261 7xu4:A (3.2) BS01 BLA ? GO:0016020 ... P0DTC2 35905112
    262 7xu4:B (3.2) BS03 BLA ? GO:0016020 ... P0DTC2 35905112
    263 7xu4:C (3.2) BS02 BLA ? GO:0016020 ... P0DTC2 35905112
    264 7xu5:A (3.1) BS01 BLA ? GO:0016020 ... P0DTC2 35905112
    265 7xu5:B (3.1) BS01 BLA ? GO:0016020 ... P0DTC2 35905112
    266 7xu5:C (3.1) BS01 BLA ? GO:0016020 ... P0DTC2 35905112
    267 7xu6:A (2.9) BS01 BLA ? GO:0016020 ... P0DTC2 35905112
    268 7xu6:B (2.9) BS01 BLA ? GO:0016020 ... P0DTC2 35905112
    269 7xu6:C (2.9) BS01 BLA ? GO:0016020 ... P0DTC2 35905112
    270 7yx1:A (2.65) BS01 BLA ? GO:0000302 ... A0A1D5B367 35919616
    271 7yx1:B (2.65) BS01 BLA ? GO:0000302 ... A0A1D5B367 35919616
    272 8avx:A (3.5) BS01 BLA 2.7.13.3 GO:0000155 ... Q9RZA4
    Q9RZA5    		 36509762
    273 8avx:B (3.5) BS01 BLA 2.7.13.3 GO:0000155 ... Q9RZA4
    Q9RZA5    		 36509762
    274 8h0x:A (2.57) BS02 BLA ? GO:0005515 ... P59594 37402591
    275 8h0x:B (2.57) BS02 BLA ? GO:0005515 ... P59594 37402591
    276 8h0x:C (2.57) BS02 BLA ? GO:0005515 ... P59594 37402591
    277 8h0y:A (2.85) BS02 BLA ? GO:0005515 ... P59594 37402591
    278 8h0y:B (2.85) BS02 BLA ? GO:0005515 ... P59594 37402591
    279 8h0y:C (2.85) BS02 BLA ? GO:0005515 ... P59594 37402591
    280 8h0z:A (2.99) BS02 BLA ? GO:0005515 ... P59594 37402591
    281 8h0z:B (2.99) BS01 BLA ? GO:0005515 ... P59594 37402591
    282 8h0z:C (2.99) BS02 BLA ? GO:0005515 ... P59594 37402591
    283 8h10:A (2.99) BS01 BLA ? GO:0005515 ... P59594 37402591
    284 8h10:B (2.99) BS02 BLA ? GO:0005515 ... P59594 37402591
    285 8h10:C (2.99) BS02 BLA ? GO:0005515 ... P59594 37402591
    286 8j2w:A (1.7) BS02 BLA ? GO:0031419 ... A0A5Q0H231 38548733
    287 8j2w:B (1.7) BS02 BLA ? GO:0031419 ... A0A5Q0H231 38548733
    288 8j2x:A (1.98) BS02 BLA ? GO:0031419 ... A0A5Q0H231 38548733
    289 8uph:A (4.13) BS01 BLA N/A N/A A0A1H7ZJA8 39121216
    290 8uph:B (4.13) BS01 BLA N/A N/A A0A1H7ZJA8 39121216
    291 8upk:A (3.75) BS01 BLA N/A N/A A0A1H7ZJA8 39121216
    292 8upk:B (3.75) BS01 BLA N/A N/A A0A1H7ZJA8 39121216
    293 8upm:A (3.75) BS01 BLA N/A N/A A0A1H7ZJA8 39121216
    294 8upm:B (3.75) BS01 BLA N/A N/A A0A1H7ZJA8 39121216
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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