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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 294 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1b33:A (2.3) BS01 BLA ? GO:0009579 ... P00315 9990029
    2 1b33:B (2.3) BS01 BLA ? GO:0009579 ... P00318 9990029
    3 1b33:F (2.3) BS01 BLA ? GO:0009579 ... P00318 9990029
    4 1b33:N (2.3) BS01 BLA ? GO:0009579 ... P20116 9990029
    5 1bvc:A (1.5) BS04 BLA 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 7707378
    6 1bvd:A (1.4) BS01 BLA 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 7707378
    7 1eyx:A (2.25) BS01 BLA ? GO:0009507 ... Q7SIG0 11134927
    8 1f99:A (2.4) BS01 BLA ? GO:0009507 ... P59858 11463658
    9 1f99:L (2.4) BS01 BLA ? GO:0009507 ... P59859 11463658
    10 1he2:A (1.2) BS02 BLA 1.3.1.-
    1.5.1.30
    2.6.99.-    		 GO:0004074 ... P30043 11224564
    11 1j2c:A (2.4) BS01 BLA 1.14.14.18 GO:0001525 ... P06762 12794075
    12 1ktp:A (1.6) BS01 BLA ? GO:0009579 ... P50032 12460674
    13 1s8c:A (2.19) BS01 BLA 1.14.14.18 GO:0004392 ... P09601 15049686
    14 1ztu:A (2.5) BS01 BLA 2.7.13.3 GO:0006355 ... Q9RZA4 16292304
    15 2c7j:A (3.0) BS01 BLA ? GO:0009579 ... P00309 16377266
    16 2c7k:A (3.2) BS01 BLA ? GO:0009579 ... P00309 16377266
    17 2c7l:A (2.85) BS01 BLA ? GO:0009579 ... P00309 16377266
    18 2d1e:A (1.51) BS01 BLA 1.3.7.5 GO:0010024 ... Q55891 16380422
    19 2uul:B (3.1) BS01 BLA N/A GO:0015979 ... N/A N/A
    20 2uul:B (3.1) BS02 BLA N/A GO:0015979 ... N/A N/A
    21 2uul:D (3.1) BS01 BLA N/A GO:0015979 ... N/A N/A
    22 2uul:G (3.1) BS01 BLA N/A GO:0015979 ... N/A N/A
    23 2uum:A (3.0) BS01 BLA ? GO:0009579 ... P72509 N/A
    24 2uum:B (3.0) BS01 BLA ? GO:0009579 ... P72508 N/A
    25 2uum:B (3.0) BS02 BLA ? GO:0009579 ... P72508 N/A
    26 2uum:C (3.0) BS01 BLA ? GO:0009579 ... P72509 N/A
    27 2uum:D (3.0) BS01 BLA ? GO:0009579 ... P72508 N/A
    28 2uum:D (3.0) BS02 BLA ? GO:0009579 ... P72508 N/A
    29 2uum:E (3.0) BS01 BLA ? GO:0009579 ... P72509 N/A
    30 2uum:F (3.0) BS01 BLA ? GO:0009579 ... P72508 N/A
    31 2uum:F (3.0) BS02 BLA ? GO:0009579 ... P72508 N/A
    32 2uum:G (3.0) BS01 BLA ? GO:0009579 ... P72509 N/A
    33 2uum:H (3.0) BS01 BLA ? GO:0009579 ... P72508 N/A
    34 2uum:H (3.0) BS02 BLA ? GO:0009579 ... P72508 N/A
    35 2uum:I (3.0) BS01 BLA ? GO:0009579 ... P72509 N/A
    36 2uum:I (3.0) BS02 BLA ? GO:0009579 ... P72509 N/A
    37 2uum:J (3.0) BS01 BLA ? GO:0009579 ... P72508 N/A
    38 2uum:J (3.0) BS02 BLA ? GO:0009579 ... P72508 N/A
    39 2uum:K (3.0) BS01 BLA ? GO:0009579 ... P72509 N/A
    40 2uum:L (3.0) BS01 BLA ? GO:0009579 ... P72508 N/A
    41 2uum:L (3.0) BS02 BLA ? GO:0009579 ... P72508 N/A
    42 2uum:L (3.0) BS03 BLA ? GO:0009579 ... P72508 N/A
    43 2uum:M (3.0) BS01 BLA ? GO:0009579 ... P72509 N/A
    44 2uum:N (3.0) BS01 BLA ? GO:0009579 ... P72508 N/A
    45 2uum:N (3.0) BS02 BLA ? GO:0009579 ... P72508 N/A
    46 2uum:O (3.0) BS01 BLA ? GO:0009579 ... P72509 N/A
    47 2uum:P (3.0) BS01 BLA ? GO:0009579 ... P72508 N/A
    48 2uum:P (3.0) BS02 BLA ? GO:0009579 ... P72508 N/A
    49 2uum:Q (3.0) BS01 BLA ? GO:0009579 ... P72509 N/A
    50 2uum:R (3.0) BS01 BLA ? GO:0009579 ... P72508 N/A
    51 2uum:S (3.0) BS01 BLA ? GO:0009579 ... P72509 N/A
    52 2uum:T (3.0) BS01 BLA ? GO:0009579 ... P72508 N/A
    53 2uum:T (3.0) BS02 BLA ? GO:0009579 ... P72508 N/A
    54 2uum:U (3.0) BS01 BLA ? GO:0009579 ... P72509 N/A
    55 2uum:V (3.0) BS01 BLA ? GO:0009579 ... P72508 N/A
    56 2uum:V (3.0) BS02 BLA ? GO:0009579 ... P72508 N/A
    57 2uum:W (3.0) BS01 BLA ? GO:0009579 ... P72509 N/A
    58 2uum:X (3.0) BS01 BLA ? GO:0009579 ... P72508 N/A
    59 2uum:X (3.0) BS02 BLA ? GO:0009579 ... P72508 N/A
    60 2uun:B (3.0) BS01 BLA N/A GO:0015979 ... N/A N/A
    61 2uun:G (3.0) BS01 BLA N/A GO:0015979 ... N/A N/A
    62 2vck:A (1.8) BS01 BLA 1.3.7.6 GO:0010024 ... Q58MU6 18662988
    63 2vck:B (1.8) BS01 BLA 1.3.7.6 GO:0010024 ... Q58MU6 18662988
    64 2vck:C (1.8) BS01 BLA 1.3.7.6 GO:0010024 ... Q58MU6 18662988
    65 2vck:D (1.8) BS01 BLA 1.3.7.6 GO:0010024 ... Q58MU6 18662988
    66 2vgr:A (2.1) BS01 BLA 1.3.7.6 GO:0010024 ... Q58MU6 18662988
    67 2vgr:B (2.1) BS01 BLA 1.3.7.6 GO:0010024 ... Q58MU6 18662988
    68 2vgr:C (2.1) BS01 BLA 1.3.7.6 GO:0010024 ... Q58MU6 18662988
    69 2vgr:D (2.1) BS01 BLA 1.3.7.6 GO:0010024 ... Q58MU6 18662988
    70 2vue:A (2.42) BS01 BLA ? GO:0003677 ... P02768 18602119
    71 2vue:B (2.42) BS01 BLA ? GO:0003677 ... P02768 18602119
    72 2x9i:A (2.2) BS01 BLA 1.3.7.6 GO:0010024 ... Q58MU6 21050180
    73 2x9i:B (2.2) BS01 BLA 1.3.7.6 GO:0010024 ... Q58MU6 21050180
    74 2x9i:C (2.2) BS01 BLA 1.3.7.6 GO:0010024 ... Q58MU6 21050180
    75 2x9i:D (2.2) BS01 BLA 1.3.7.6 GO:0010024 ... Q58MU6 21050180
    76 2x9j:A (1.85) BS01 BLA 1.3.7.6 GO:0010024 ... Q58MU6 21050180
    77 2x9j:B (1.85) BS01 BLA 1.3.7.6 GO:0010024 ... Q58MU6 21050180
    78 2x9o:A (1.55) BS01 BLA 1.3.7.2 GO:0010024 ... Q02189 21729003
    79 3ajg:A (1.9) BS01 BLA 1.3.7.5 GO:0010024 ... Q55891 20946883
    80 3ajg:B (1.9) BS01 BLA 1.3.7.5 GO:0010024 ... Q55891 20946883
    81 3brp:A (1.85) BS01 BLA ? GO:0009507 ... P00306 N/A
    82 3brp:A (1.85) BS02 BLA ? GO:0009507 ... P00306 N/A
    83 3brp:B (1.85) BS01 BLA ? GO:0009507 ... P00311 N/A
    84 3brp:B (1.85) BS02 BLA ? GO:0009507 ... P00311 N/A
    85 3c2w:A (2.9) BS01 BLA 2.7.13.3 GO:0006355 ... Q9HWR3 18799746
    86 3c2w:B (2.9) BS01 BLA 2.7.13.3 GO:0006355 ... Q9HWR3 18799746
    87 3c2w:C (2.9) BS01 BLA 2.7.13.3 GO:0006355 ... Q9HWR3 18799746
    88 3c2w:D (2.9) BS01 BLA 2.7.13.3 GO:0006355 ... Q9HWR3 18799746
    89 3c2w:E (2.9) BS01 BLA 2.7.13.3 GO:0006355 ... Q9HWR3 18799746
    90 3c2w:F (2.9) BS01 BLA 2.7.13.3 GO:0006355 ... Q9HWR3 18799746
    91 3c2w:G (2.9) BS01 BLA 2.7.13.3 GO:0006355 ... Q9HWR3 18799746
    92 3c2w:H (2.9) BS01 BLA 2.7.13.3 GO:0006355 ... Q9HWR3 18799746
    93 3f0l:A (1.3) BS01 BLA 1.3.7.5 GO:0010024 ... Q55891 20557110
    94 3f0m:A (1.5) BS01 BLA 1.3.7.5 GO:0010024 ... Q55891 20557110
    95 3g6o:A (2.85) BS01 BLA 2.7.13.3 GO:0006355 ... Q9HWR3 19720999
    96 3g6o:B (2.85) BS01 BLA 2.7.13.3 GO:0006355 ... Q9HWR3 19720999
    97 3i95:A (1.4) BS01 BLA 1.3.7.5 GO:0010024 ... Q55891 N/A
    98 3ibr:A (2.97) BS01 BLA 2.7.13.3 GO:0006355 ... Q9HWR3 19720999
    99 3ibr:B (2.97) BS01 BLA 2.7.13.3 GO:0006355 ... Q9HWR3 19720999
    100 3kvs:A (1.5) BS01 BLA ? GO:0009507 ... P00306 N/A
    101 3kvs:A (1.5) BS02 BLA ? GO:0009507 ... P00306 N/A
    102 3kvs:B (1.5) BS01 BLA ? GO:0009507 ... P00311 N/A
    103 3kvs:B (1.5) BS02 BLA ? GO:0009507 ... P00311 N/A
    104 3nb8:A (1.3) BS01 BLA 1.3.7.5 GO:0010024 ... Q55891 20557110
    105 3nb9:A (1.5) BS01 BLA 1.3.7.5 GO:0010024 ... Q55891 20557110
    106 3nhq:A (2.55) BS01 BLA 2.7.13.3 GO:0006355 ... Q9HWR3 22002602
    107 3nhq:B (2.55) BS01 BLA 2.7.13.3 GO:0006355 ... Q9HWR3 22002602
    108 3nhq:C (2.55) BS01 BLA 2.7.13.3 GO:0006355 ... Q9HWR3 22002602
    109 3nhq:D (2.55) BS01 BLA 2.7.13.3 GO:0006355 ... Q9HWR3 22002602
    110 3nhq:E (2.55) BS01 BLA 2.7.13.3 GO:0006355 ... Q9HWR3 22002602
    111 3nhq:F (2.55) BS01 BLA 2.7.13.3 GO:0006355 ... Q9HWR3 22002602
    112 3nhq:G (2.55) BS01 BLA 2.7.13.3 GO:0006355 ... Q9HWR3 22002602
    113 3nhq:H (2.55) BS01 BLA 2.7.13.3 GO:0006355 ... Q9HWR3 22002602
    114 3nop:C (2.8) BS01 BLA 2.7.13.3 GO:0006355 ... Q9HWR3 22002602
    115 3not:C (2.7) BS01 BLA 2.7.13.3 GO:0006355 ... Q9HWR3 22002602
    116 3nou:C (3.0) BS01 BLA 2.7.13.3 GO:0006355 ... Q9HWR3 22002602
    117 4eoc:A (1.49) BS01 BLA 1.3.7.5 GO:0010024 ... Q55891 N/A
    118 4eod:A (1.3) BS01 BLA 1.3.7.5 GO:0010024 ... Q55891 N/A
    119 4eoe:A (1.2) BS01 BLA 1.3.7.5 GO:0010024 ... Q55891 N/A
    120 4gpc:A (1.85) BS01 BLA 1.14.14.18 GO:0004392 ... Q54AI1 N/A
    121 4gpc:B (1.85) BS01 BLA 1.14.14.18 GO:0004392 ... Q54AI1 N/A
    122 4gpc:C (1.85) BS01 BLA 1.14.14.18 GO:0004392 ... Q54AI1 N/A
    123 4gpf:A (1.9) BS01 BLA 1.14.14.18 GO:0004392 ... Q54AI1 N/A
    124 4gpf:B (1.9) BS01 BLA 1.14.14.18 GO:0004392 ... Q54AI1 N/A
    125 4gpf:C (1.9) BS01 BLA 1.14.14.18 GO:0004392 ... Q54AI1 N/A
    126 4gph:A (1.7) BS01 BLA 1.14.14.18 GO:0004392 ... Q54AI1 N/A
    127 4gph:B (1.7) BS01 BLA 1.14.14.18 GO:0004392 ... Q54AI1 N/A
    128 4gph:C (1.7) BS01 BLA 1.14.14.18 GO:0004392 ... Q54AI1 N/A
    129 4gw9:A (2.9) BS01 BLA N/A GO:0006355 ... N/A 22795083
    130 4gw9:B (2.9) BS01 BLA N/A GO:0006355 ... N/A 22795083
    131 4gw9:C (2.9) BS01 BLA N/A GO:0006355 ... N/A 22795083
    132 4gw9:D (2.9) BS01 BLA N/A GO:0006355 ... N/A 22795083
    133 4l1e:A (2.61) BS01 BLA ? GO:0009579 ... A0A067XG68 24576002
    134 4l1e:B (2.61) BS01 BLA ? GO:0009579 ... A0A067XG69 24576002
    135 4l1e:B (2.61) BS02 BLA ? GO:0009579 ... A0A067XG69 24576002
    136 4l1e:B (2.61) BS03 BLA ? GO:0009579 ... A0A067XG69 24576002
    137 4l1e:C (2.61) BS01 BLA ? GO:0009579 ... A0A067XG68 24576002
    138 4l1e:D (2.61) BS01 BLA ? GO:0009579 ... A0A067XG69 24576002
    139 4l1e:D (2.61) BS02 BLA ? GO:0009579 ... A0A067XG69 24576002
    140 4l1e:E (2.61) BS01 BLA ? GO:0009579 ... A0A067XG68 24576002
    141 4l1e:F (2.61) BS01 BLA ? GO:0009579 ... A0A067XG69 24576002
    142 4l1e:F (2.61) BS02 BLA ? GO:0009579 ... A0A067XG69 24576002
    143 4l1e:G (2.61) BS01 BLA ? GO:0009579 ... A0A067XG68 24576002
    144 4l1e:H (2.61) BS01 BLA ? GO:0009579 ... A0A067XG69 24576002
    145 4l1e:H (2.61) BS02 BLA ? GO:0009579 ... A0A067XG69 24576002
    146 4l1e:I (2.61) BS01 BLA ? GO:0009579 ... A0A067XG68 24576002
    147 4l1e:I (2.61) BS02 BLA ? GO:0009579 ... A0A067XG68 24576002
    148 4l1e:J (2.61) BS01 BLA ? GO:0009579 ... A0A067XG69 24576002
    149 4l1e:J (2.61) BS02 BLA ? GO:0009579 ... A0A067XG69 24576002
    150 4l1e:K (2.61) BS01 BLA ? GO:0009579 ... A0A067XG68 24576002
    151 4l1e:L (2.61) BS01 BLA ? GO:0009579 ... A0A067XG69 24576002
    152 4l1e:L (2.61) BS02 BLA ? GO:0009579 ... A0A067XG69 24576002
    153 4qcd:A (1.551) BS01 BLA 1.3.7.5 GO:0016491 ... Q55891 25872660
    154 4r6l:A (3.395) BS01 BLA 2.7.13.3 GO:0006355 ... Q6N5G3 26095026
    155 4r6l:B (3.395) BS01 BLA 2.7.13.3 GO:0006355 ... Q6N5G3 26095026
    156 4r70:A (2.85) BS01 BLA 2.7.13.3 GO:0006355 ... Q6N5G2 26095026
    157 4r70:B (2.85) BS01 BLA 2.7.13.3 GO:0006355 ... Q6N5G2 26095026
    158 4rq9:A (2.5) BS01 BLA 2.7.13.3 GO:0006355 ... Q097N3 N/A
    159 4s21:A (3.25) BS01 BLA 2.7.13.3 GO:0006355 ... Q6N5G3 26095026
    160 4s21:B (3.25) BS01 BLA 2.7.13.3 GO:0006355 ... Q6N5G3 26095026
    161 5akp:A (3.25) BS01 BLA ? GO:0006355 ... A0A0H2XCS3 27107635
    162 5akp:B (3.25) BS01 BLA ? GO:0006355 ... A0A0H2XCS3 27107635
    163 5b3v:A (2.594) BS02 BLA ? GO:0000166 ... P72782 28169272
    164 5b3v:A (2.594) BS03 BLA ? GO:0000166 ... P72782 28169272
    165 5b3v:B (2.594) BS02 BLA ? GO:0000166 ... P72782 28169272
    166 5b3v:B (2.594) BS03 BLA ? GO:0000166 ... P72782 28169272
    167 5b3v:C (2.594) BS02 BLA ? GO:0000166 ... P72782 28169272
    168 5b3v:C (2.594) BS03 BLA ? GO:0000166 ... P72782 28169272
    169 5b3v:D (2.594) BS02 BLA ? GO:0000166 ... P72782 28169272
    170 5b3v:D (2.594) BS03 BLA ? GO:0000166 ... P72782 28169272
    171 5b4h:A (1.11) BS01 BLA 1.3.7.5 GO:0010024 ... Q55891 27596987
    172 5b4i:A (1.11) BS01 BLA 1.3.7.5 GO:0010024 ... Q55891 27596987
    173 5b4j:A (1.05) BS01 BLA 1.3.7.5 GO:0010024 ... Q55891 27596987
    174 5btq:A (2.08) BS01 BLA 1.14.14.18 GO:0004392 ... P09601 27490825
    175 5btq:B (2.08) BS01 BLA 1.14.14.18 GO:0004392 ... P09601 27490825
    176 5c5k:A (3.31) BS01 BLA 2.7.13.3 GO:0006355 ... Q9RZA4 26853942
    177 5c5k:B (3.31) BS01 BLA 2.7.13.3 GO:0006355 ... Q9RZA4 26853942
    178 5c5k:C (3.31) BS01 BLA 2.7.13.3 GO:0006355 ... Q9RZA4 26853942
    179 5c5k:D (3.31) BS01 BLA 2.7.13.3 GO:0006355 ... Q9RZA4 26853942
    180 5ez2:A (1.849) BS01 BLA ? GO:0000302 ... A0A1D5B367 27688756
    181 5ez2:B (1.849) BS01 BLA ? GO:0000302 ... A0A1D5B367 27688756
    182 5f6z:A (2.248) BS01 BLA ? GO:0000302 ... A0A1D5B369 27688756
    183 5f6z:A (2.248) BS02 BLA ? GO:0000302 ... A0A1D5B369 27688756
    184 5f6z:B (2.248) BS01 BLA ? GO:0000302 ... A0A1D5B369 27688756
    185 5f6z:B (2.248) BS02 BLA ? GO:0000302 ... A0A1D5B369 27688756
    186 5f6z:C (2.248) BS01 BLA ? GO:0000302 ... A0A1D5B369 27688756
    187 5f6z:C (2.248) BS02 BLA ? GO:0000302 ... A0A1D5B369 27688756
    188 5f6z:D (2.248) BS01 BLA ? GO:0000302 ... A0A1D5B369 27688756
    189 5f6z:D (2.248) BS02 BLA ? GO:0000302 ... A0A1D5B369 27688756
    190 5hsq:A (1.85) BS01 BLA 2.7.13.3 GO:0006355 ... Q7CY45 27466363
    191 5i5l:A (2.7) BS01 BLA 2.7.13.3 GO:0006355 ... Q7CY45 27466363
    192 5oy5:A (2.6) BS01 BLA ? GO:0006355 ... A0A161I5N6 N/A
    193 5uyr:A (3.45) BS01 BLA ? GO:0006355 ... A0A0H2XCS3 33864705
    194 5uyr:B (3.45) BS01 BLA ? GO:0006355 ... A0A0H2XCS3 33864705
    195 5vik:A (1.35) BS01 BLA N/A GO:0006355 ... N/A 28936332
    196 5viq:A (1.34) BS01 BLA N/A GO:0006355 ... N/A 28936332
    197 5zoh:A (1.6) BS01 BLA ? N/A Q8YXY7 30948637
    198 6hrk:A (2.52) BS01 BLA ? GO:0015979 ... K9TY40 N/A
    199 6hrk:A (2.52) BS02 BLA ? GO:0015979 ... K9TY40 N/A
    200 6hrk:B (2.52) BS01 BLA ? GO:0015979 ... K9TY40 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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