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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 3964 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 3amq:A (1.8) BS03 BGC 3.2.1.4 GO:0000272 ... Q60032 21268113
    802 3amq:B (1.8) BS02 BGC 3.2.1.4 GO:0000272 ... Q60032 21268113
    803 3amq:B (1.8) BS03 BGC 3.2.1.4 GO:0000272 ... Q60032 21268113
    804 3amq:C (1.8) BS02 BGC 3.2.1.4 GO:0000272 ... Q60032 21268113
    805 3amq:C (1.8) BS03 BGC 3.2.1.4 GO:0000272 ... Q60032 21268113
    806 3amq:D (1.8) BS02 BGC 3.2.1.4 GO:0000272 ... Q60032 21268113
    807 3ap6:A (1.58) BS01 BGC ? GO:0030246 ... O00214 21288902
    808 3ap6:B (1.58) BS01 BGC ? GO:0030246 ... O00214 21288902
    809 3ap6:C (1.58) BS01 BGC ? GO:0030246 ... O00214 21288902
    810 3ap6:D (1.58) BS01 BGC ? GO:0030246 ... O00214 21288902
    811 3ap7:A (1.53) BS01 BGC ? GO:0030246 ... O00214 21288902
    812 3ap9:A (1.33) BS01 BGC ? GO:0030246 ... O00214 21288902
    813 3aqx:A (2.05) BS01 BGC ? GO:0030246 ... Q9NL89 21697086
    814 3aqx:A (2.05) BS02 BGC ? GO:0030246 ... Q9NL89 21697086
    815 3aqx:B (2.05) BS01 BGC ? GO:0030246 ... Q9NL89 21697086
    816 3aqx:B (2.05) BS02 BGC ? GO:0030246 ... Q9NL89 21697086
    817 3aqz:A (2.2) BS01 BGC ? GO:0030246 ... Q8MU95 21697086
    818 3aqz:A (2.2) BS02 BGC ? GO:0030246 ... Q8MU95 21697086
    819 3aqz:B (2.2) BS01 BGC ? GO:0030246 ... Q8MU95 21697086
    820 3auu:A (2.0) BS01 BGC 1.1.1.47 GO:0016491 ... P39485 22804868
    821 3auu:B (2.0) BS01 BGC 1.1.1.47 GO:0016491 ... P39485 22804868
    822 3axe:A (1.53) BS01 BGC 3.2.1.73 GO:0004553 ... P17989 21959377
    823 3axe:A (1.53) BS02 BGC 3.2.1.73 GO:0004553 ... P17989 21959377
    824 3axx:A (1.9) BS01 BGC 3.2.1.4 GO:0000272 ... O58925 21557724
    825 3axx:B (1.9) BS01 BGC 3.2.1.4 GO:0000272 ... O58925 21557724
    826 3axx:B (1.9) BS02 BGC 3.2.1.4 GO:0000272 ... O58925 21557724
    827 3axx:C (1.9) BS01 BGC 3.2.1.4 GO:0000272 ... O58925 21557724
    828 3axx:C (1.9) BS02 BGC 3.2.1.4 GO:0000272 ... O58925 21557724
    829 3ay6:A (2.1) BS02 BGC 1.1.1.47 GO:0016491 ... P39485 22804868
    830 3ay6:B (2.1) BS01 BGC 1.1.1.47 GO:0016491 ... P39485 22804868
    831 3ay6:C (2.1) BS02 BGC 1.1.1.47 GO:0016491 ... P39485 22804868
    832 3ay6:D (2.1) BS01 BGC 1.1.1.47 GO:0016491 ... P39485 22804868
    833 3aye:A (2.0) BS01 BGC ? GO:0030246 ... P17931 21949831
    834 3aye:B (2.0) BS01 BGC ? GO:0030246 ... P17931 21949831
    835 3ays:A (2.2) BS01 BGC 3.2.1.4 GO:0000272 ... Q9URH5 22102024
    836 3ays:A (2.2) BS02 BGC 3.2.1.4 GO:0000272 ... Q9URH5 22102024
    837 3azr:A (1.71) BS02 BGC 3.2.1.4 GO:0000272 ... Q9X273 21839861
    838 3azr:B (1.71) BS02 BGC 3.2.1.4 GO:0000272 ... Q9X273 21839861
    839 3azr:B (1.71) BS03 BGC 3.2.1.4 GO:0000272 ... Q9X273 21839861
    840 3azt:A (1.8) BS02 BGC 3.2.1.4 GO:0000272 ... Q9X273 21839861
    841 3azt:D (1.8) BS02 BGC 3.2.1.4 GO:0000272 ... Q9X273 21839861
    842 3b8a:X (2.95) BS01 BGC 2.7.1.1 GO:0001678 ... P04806 18260108
    843 3bc9:A (1.35) BS04 BGC 3.2.1.98 GO:0004553 ... B8CZ54 18387632
    844 3bcd:A (2.2) BS01 BGC 3.2.1.98 GO:0004553 ... B8CZ54 18387632
    845 3bsh:A (3.0) BS01 BGC 3.2.1.1 GO:0004556 ... P00693 18588886
    846 3c7o:A (1.8) BS01 BGC 3.2.1.55 GO:0004553 ... Q45071 18980579
    847 3c7o:A (1.8) BS02 BGC 3.2.1.55 GO:0004553 ... Q45071 18980579
    848 3c7o:A (1.8) BS03 BGC 3.2.1.55 GO:0004553 ... Q45071 18980579
    849 3c7o:A (1.8) BS04 BGC 3.2.1.55 GO:0004553 ... Q45071 18980579
    850 3cel:A (2.0) BS01 BGC 3.2.1.91 GO:0004553 ... P62694 8951380
    851 3cel:A (2.0) BS02 BGC 3.2.1.91 GO:0004553 ... P62694 8951380
    852 3dgy:A (1.8) BS01 BGC 3.1.4.8 GO:0003723 ... Q53752 19558492
    853 3dh2:A (2.25) BS01 BGC 3.1.4.8 GO:0003723 ... Q53752 19558492
    854 3dh2:B (2.25) BS01 BGC 3.1.4.8 GO:0003723 ... Q53752 19558492
    855 3dh2:C (2.25) BS01 BGC 3.1.4.8 GO:0003723 ... Q53752 19558492
    856 3edf:A (1.65) BS01 BGC 3.2.1.54 GO:0005975 ... Q8KKG0 19014948
    857 3edf:A (1.65) BS02 BGC 3.2.1.54 GO:0005975 ... Q8KKG0 19014948
    858 3edf:A (1.65) BS03 BGC 3.2.1.54 GO:0005975 ... Q8KKG0 19014948
    859 3edf:A (1.65) BS04 BGC 3.2.1.54 GO:0005975 ... Q8KKG0 19014948
    860 3edf:B (1.65) BS01 BGC 3.2.1.54 GO:0005975 ... Q8KKG0 19014948
    861 3edf:B (1.65) BS02 BGC 3.2.1.54 GO:0005975 ... Q8KKG0 19014948
    862 3edf:B (1.65) BS03 BGC 3.2.1.54 GO:0005975 ... Q8KKG0 19014948
    863 3edf:B (1.65) BS04 BGC 3.2.1.54 GO:0005975 ... Q8KKG0 19014948
    864 3eng:A (1.9) BS01 BGC 3.2.1.4 GO:0005975 ... P43316 15299721
    865 3eng:A (1.9) BS02 BGC 3.2.1.4 GO:0005975 ... P43316 15299721
    866 3epz:A (2.31) BS02 BGC 2.1.1.37 N/A P26358 21389349
    867 3f5j:A (1.95) BS01 BGC 3.2.1.21 GO:0004553 ... Q75I93 20884352
    868 3f5j:A (1.95) BS02 BGC 3.2.1.21 GO:0004553 ... Q75I93 20884352
    869 3f5j:A (1.95) BS03 BGC 3.2.1.21 GO:0004553 ... Q75I93 20884352
    870 3f5j:B (1.95) BS01 BGC 3.2.1.21 GO:0004553 ... Q75I93 20884352
    871 3f5j:B (1.95) BS02 BGC 3.2.1.21 GO:0004553 ... Q75I93 20884352
    872 3f5j:B (1.95) BS03 BGC 3.2.1.21 GO:0004553 ... Q75I93 20884352
    873 3f5k:A (1.8) BS01 BGC 3.2.1.21 GO:0004553 ... Q75I93 20884352
    874 3f5k:A (1.8) BS02 BGC 3.2.1.21 GO:0004553 ... Q75I93 20884352
    875 3f5k:A (1.8) BS03 BGC 3.2.1.21 GO:0004553 ... Q75I93 20884352
    876 3f5k:B (1.8) BS01 BGC 3.2.1.21 GO:0004553 ... Q75I93 20884352
    877 3f5k:B (1.8) BS02 BGC 3.2.1.21 GO:0004553 ... Q75I93 20884352
    878 3f5k:B (1.8) BS03 BGC 3.2.1.21 GO:0004553 ... Q75I93 20884352
    879 3f5l:A (1.37) BS01 BGC 3.2.1.21 GO:0004553 ... Q75I93 20884352
    880 3f5l:A (1.37) BS02 BGC 3.2.1.21 GO:0004553 ... Q75I93 20884352
    881 3f5l:B (1.37) BS01 BGC 3.2.1.21 GO:0004553 ... Q75I93 20884352
    882 3f5l:B (1.37) BS02 BGC 3.2.1.21 GO:0004553 ... Q75I93 20884352
    883 3fgu:A (2.15) BS01 BGC 2.7.1.1 GO:0001678 ... P35557 22101819
    884 3fwk:A (1.2) BS01 BGC 2.7.7.2 GO:0000287 ... Q6FNA9 19375431
    885 3g6k:B (1.35) BS03 BGC 2.7.7.2 GO:0000287 ... Q6FNA9 19375431
    886 3gbp:A (2.4) BS01 BGC ? GO:0006935 ... P23905 1967096
    887 3gd9:A (1.8) BS02 BGC 3.2.1.39 N/A Q9Z4I2 19640850
    888 3gd9:A (1.8) BS03 BGC 3.2.1.39 N/A Q9Z4I2 19640850
    889 3gd9:A (1.8) BS04 BGC 3.2.1.39 N/A Q9Z4I2 19640850
    890 3ghm:A (2.6) BS01 BGC 3.4.24.87 GO:0030198 ... Q76LX8 N/A
    891 3ghn:A (2.8) BS02 BGC 3.4.24.87 GO:0030198 ... Q76LX8 N/A
    892 3h2w:A (2.66) BS02 BGC 3.2.1.4 GO:0003824 ... Q9AJS0 19729024
    893 3h2w:A (2.66) BS03 BGC 3.2.1.4 GO:0003824 ... Q9AJS0 19729024
    894 3h3k:A (2.1) BS02 BGC 3.2.1.4 GO:0003824 ... Q9AJS0 19729024
    895 3h3k:A (2.1) BS03 BGC 3.2.1.4 GO:0003824 ... Q9AJS0 19729024
    896 3h5c:B (3.26) BS01 BGC ? GO:0004252 ... P22891 20427285
    897 3i5o:A (1.5) BS01 BGC ? GO:0015833 ... Q9WXN8 19801540
    898 3i5o:A (1.5) BS02 BGC ? GO:0015833 ... Q9WXN8 19801540
    899 3i5o:A (1.5) BS03 BGC ? GO:0015833 ... Q9WXN8 19801540
    900 3i5o:A (1.5) BS04 BGC ? GO:0015833 ... Q9WXN8 19801540
    901 3i5o:A (1.5) BS05 BGC ? GO:0015833 ... Q9WXN8 19801540
    902 3i5o:B (1.5) BS01 BGC ? GO:0015833 ... Q9WXN8 19801540
    903 3i5o:B (1.5) BS02 BGC ? GO:0015833 ... Q9WXN8 19801540
    904 3i5o:B (1.5) BS03 BGC ? GO:0015833 ... Q9WXN8 19801540
    905 3i5o:B (1.5) BS04 BGC ? GO:0015833 ... Q9WXN8 19801540
    906 3ic3:B (1.8) BS01 BGC ? N/A Q6N5V5 N/A
    907 3ic3:D (1.8) BS01 BGC ? N/A Q6N5V5 N/A
    908 3ii1:A (2.25) BS01 BGC 3.2.1.4 N/A A1E9A6 20043877
    909 3ij7:A (2.0) BS02 BGC 3.2.1.1 GO:0003824 ... P04746 19803533
    910 3ij9:A (1.85) BS02 BGC 3.2.1.1 GO:0003824 ... P04746 19803533
    911 3k0t:A (2.1) BS01 BGC ? GO:0005829 ... Q88BE5 20478270
    912 3k0t:A (2.1) BS02 BGC ? GO:0005829 ... Q88BE5 20478270
    913 3k0t:B (2.1) BS01 BGC ? GO:0005829 ... Q88BE5 20478270
    914 3k0t:C (2.1) BS01 BGC ? GO:0005829 ... Q88BE5 20478270
    915 3k0t:C (2.1) BS02 BGC ? GO:0005829 ... Q88BE5 20478270
    916 3k0v:A (1.91) BS03 BGC 3.4.21.- GO:0005576 ... P24627 20371371
    917 3k4z:A (2.11) BS01 BGC N/A GO:0005975 ... N/A 20654622
    918 3k4z:A (2.11) BS02 BGC N/A GO:0005975 ... N/A 20654622
    919 3kj7:A (1.91) BS02 BGC 3.4.21.- GO:0005576 ... P24627 20371371
    920 3kj7:A (1.91) BS03 BGC 3.4.21.- GO:0005576 ... P24627 20371371
    921 3kzh:A (2.45) BS01 BGC ? GO:0016301 ... Q8XKB8 N/A
    922 3kzh:B (2.45) BS01 BGC ? GO:0016301 ... Q8XKB8 N/A
    923 3lfi:A (2.0) BS01 BGC ? GO:0004553 ... Q1W3Z7 N/A
    924 3lfi:B (2.0) BS01 BGC ? GO:0004553 ... Q1W3Z7 N/A
    925 3lse:A (2.69) BS01 BGC ? GO:0030246 ... O00182 20227520
    926 3m2m:A (2.95) BS01 BGC ? GO:0002317 ... P11762 20873803
    927 3m2m:C (2.95) BS01 BGC ? GO:0002317 ... P11762 20873803
    928 3m2m:D (2.95) BS01 BGC ? GO:0002317 ... P11762 20873803
    929 3m2m:E (2.95) BS01 BGC ? GO:0002317 ... P11762 20873803
    930 3m2m:H (2.95) BS01 BGC ? GO:0002317 ... P11762 20873803
    931 3m7s:A (2.4) BS01 BGC ? GO:0004568 ... B2ZGS7 20528916
    932 3mkk:A (1.91) BS02 BGC 3.2.1.- GO:0003824 ... A5ZY13 20581222
    933 3mkk:B (1.91) BS01 BGC 3.2.1.- GO:0003824 ... A5ZY13 20581222
    934 3n5d:A (1.9) BS01 BGC 3.2.2.22 GO:0000166 ... D9J2T9 N/A
    935 3n92:A (2.89) BS01 BGC 2.4.1.18 GO:0003824 ... Q5JDJ7 21104698
    936 3n98:A (1.87) BS01 BGC 2.4.1.18 GO:0003824 ... Q5JDJ7 21104698
    937 3n98:A (1.87) BS02 BGC 2.4.1.18 GO:0003824 ... Q5JDJ7 21104698
    938 3n9k:A (1.7) BS01 BGC 2.4.1.-
    3.2.1.58    		 GO:0000272 ... P29717 20875088
    939 3n9k:A (1.7) BS02 BGC 2.4.1.-
    3.2.1.58    		 GO:0000272 ... P29717 20875088
    940 3n9k:A (1.7) BS03 BGC 2.4.1.-
    3.2.1.58    		 GO:0000272 ... P29717 20875088
    941 3ndz:A (2.08) BS01 BGC 3.2.1.4 GO:0000272 ... P28623 N/A
    942 3ndz:A (2.08) BS02 BGC 3.2.1.4 GO:0000272 ... P28623 N/A
    943 3ndz:A (2.08) BS03 BGC 3.2.1.4 GO:0000272 ... P28623 N/A
    944 3ndz:B (2.08) BS01 BGC 3.2.1.4 GO:0000272 ... P28623 N/A
    945 3ndz:B (2.08) BS02 BGC 3.2.1.4 GO:0000272 ... P28623 N/A
    946 3ndz:B (2.08) BS03 BGC 3.2.1.4 GO:0000272 ... P28623 N/A
    947 3ndz:C (2.08) BS01 BGC 3.2.1.4 GO:0000272 ... P28623 N/A
    948 3ndz:C (2.08) BS02 BGC 3.2.1.4 GO:0000272 ... P28623 N/A
    949 3ndz:C (2.08) BS03 BGC 3.2.1.4 GO:0000272 ... P28623 N/A
    950 3ndz:C (2.08) BS04 BGC 3.2.1.4 GO:0000272 ... P28623 N/A
    951 3ndz:D (2.08) BS01 BGC 3.2.1.4 GO:0000272 ... P28623 N/A
    952 3ndz:D (2.08) BS02 BGC 3.2.1.4 GO:0000272 ... P28623 N/A
    953 3ndz:D (2.08) BS03 BGC 3.2.1.4 GO:0000272 ... P28623 N/A
    954 3ngb:A (2.68) BS01 BGC ? GO:0019031 ... Q0ED31 20616231
    955 3ngb:A (2.68) BS02 BGC ? GO:0019031 ... Q0ED31 20616231
    956 3ngb:A (2.68) BS03 BGC ? GO:0019031 ... Q0ED31 20616231
    957 3ngb:B (2.68) BS01 BGC N/A N/A N/A 20616231
    958 3ngb:B (2.68) BS02 BGC N/A N/A N/A 20616231
    959 3ngb:C (2.68) BS01 BGC N/A N/A N/A 20616231
    960 3ngb:D (2.68) BS01 BGC ? GO:0019031 ... Q0ED31 20616231
    961 3ngb:G (2.68) BS01 BGC ? GO:0019031 ... Q0ED31 20616231
    962 3ngb:I (2.68) BS01 BGC ? GO:0019031 ... Q0ED31 20616231
    963 3njs:A (2.1) BS01 BGC 3.2.2.22 GO:0000166 ... D9J2T9 N/A
    964 3nv4:A (1.99) BS01 BGC ? GO:0030246 ... O00182 20861009
    965 3o5b:A (1.97) BS01 BGC 2.7.1.1 GO:0001678 ... P33284 20943665
    966 3o5b:B (1.97) BS01 BGC 2.7.1.1 GO:0001678 ... P33284 20943665
    967 3o8m:A (1.42) BS02 BGC 2.7.1.1 GO:0001678 ... P33284 20943665
    968 3oea:A (1.35) BS01 BGC ? GO:0016798 ... Q9ZA17 20739280
    969 3oea:A (1.35) BS02 BGC ? GO:0016798 ... Q9ZA17 20739280
    970 3oea:A (1.35) BS03 BGC ? GO:0016798 ... Q9ZA17 20739280
    971 3oea:B (1.35) BS02 BGC ? GO:0016798 ... Q9ZA17 20739280
    972 3oea:B (1.35) BS03 BGC ? GO:0016798 ... Q9ZA17 20739280
    973 3oea:B (1.35) BS04 BGC ? GO:0016798 ... Q9ZA17 20739280
    974 3olg:A (2.3) BS07 BGC 3.2.1.1 GO:0003824 ... P04746 21111049 PDBbind: -logKd/Ki=7.84, Ki=14.3nM
    975 3oli:A (1.5) BS11 BGC 3.2.1.1 GO:0003824 ... P04746 21111049
    976 3p5h:A (1.6051) BS01 BGC ? N/A Q9UJ71 21112338
    977 3p5h:B (1.6051) BS01 BGC ? N/A Q9UJ71 21112338
    978 3p5h:C (1.6051) BS01 BGC ? N/A Q9UJ71 21112338
    979 3p5h:D (1.6051) BS01 BGC ? N/A Q9UJ71 21112338
    980 3p70:F (2.55) BS05 BGC 3.4.21.5 GO:0004252 ... P00734 21555742
    981 3p70:H (2.55) BS05 BGC 3.4.21.5 GO:0004252 ... P00734 21555742
    982 3pfx:A (1.2616) BS01 BGC 3.2.1.-
    3.2.1.91    		 GO:0004553 ... Q8TFL9 N/A
    983 3pfx:A (1.2616) BS02 BGC 3.2.1.-
    3.2.1.91    		 GO:0004553 ... Q8TFL9 N/A
    984 3pfz:A (1.0993) BS01 BGC 3.2.1.-
    3.2.1.91    		 GO:0004553 ... Q8TFL9 N/A
    985 3pfz:A (1.0993) BS02 BGC 3.2.1.-
    3.2.1.91    		 GO:0004553 ... Q8TFL9 N/A
    986 3pfz:A (1.0993) BS03 BGC 3.2.1.-
    3.2.1.91    		 GO:0004553 ... Q8TFL9 N/A
    987 3pfz:A (1.0993) BS04 BGC 3.2.1.-
    3.2.1.91    		 GO:0004553 ... Q8TFL9 N/A
    988 3pfz:A (1.0993) BS05 BGC 3.2.1.-
    3.2.1.91    		 GO:0004553 ... Q8TFL9 N/A
    989 3pfz:A (1.0993) BS06 BGC 3.2.1.-
    3.2.1.91    		 GO:0004553 ... Q8TFL9 N/A
    990 3pl3:A (1.1804) BS01 BGC 3.2.1.-
    3.2.1.91    		 GO:0004553 ... Q8TFL9 N/A
    991 3pl3:A (1.1804) BS02 BGC 3.2.1.-
    3.2.1.91    		 GO:0004553 ... Q8TFL9 N/A
    992 3pl3:A (1.1804) BS03 BGC 3.2.1.-
    3.2.1.91    		 GO:0004553 ... Q8TFL9 N/A
    993 3pl3:A (1.1804) BS04 BGC 3.2.1.-
    3.2.1.91    		 GO:0004553 ... Q8TFL9 N/A
    994 3pl3:A (1.1804) BS05 BGC 3.2.1.-
    3.2.1.91    		 GO:0004553 ... Q8TFL9 N/A
    995 3pl3:A (1.1804) BS06 BGC 3.2.1.-
    3.2.1.91    		 GO:0004553 ... Q8TFL9 N/A
    996 3pl3:A (1.1804) BS07 BGC 3.2.1.-
    3.2.1.91    		 GO:0004553 ... Q8TFL9 N/A
    997 3pl3:A (1.1804) BS08 BGC 3.2.1.-
    3.2.1.91    		 GO:0004553 ... Q8TFL9 N/A
    998 3poy:A (3.02) BS01 BGC ? N/A Q28146 21620717
    999 3pzi:A (1.55) BS01 BGC 3.2.1.78 GO:0000272 ... A5IMX7 N/A
    1000 3qfy:A (2.3) BS01 BGC 2.4.1.20 GO:0003824 ... O66264 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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