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BioLiP
Download all results in tab-seperated text for 3964 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2801 6k55:B (2.883) BS02 BGC 3.2.1.- GO:0004553 ... A0A4Y1YS11 N/A
    2802 6k55:B (2.883) BS03 BGC 3.2.1.- GO:0004553 ... A0A4Y1YS11 N/A
    2803 6k55:B (2.883) BS04 BGC 3.2.1.- GO:0004553 ... A0A4Y1YS11 N/A
    2804 6k55:B (2.883) BS05 BGC 3.2.1.- GO:0004553 ... A0A4Y1YS11 N/A
    2805 6k55:B (2.883) BS06 BGC 3.2.1.- GO:0004553 ... A0A4Y1YS11 N/A
    2806 6k55:B (2.883) BS07 BGC 3.2.1.- GO:0004553 ... A0A4Y1YS11 N/A
    2807 6k55:C (2.883) BS01 BGC 3.2.1.- GO:0004553 ... A0A4Y1YS11 N/A
    2808 6k55:C (2.883) BS02 BGC 3.2.1.- GO:0004553 ... A0A4Y1YS11 N/A
    2809 6k55:C (2.883) BS03 BGC 3.2.1.- GO:0004553 ... A0A4Y1YS11 N/A
    2810 6k55:C (2.883) BS04 BGC 3.2.1.- GO:0004553 ... A0A4Y1YS11 N/A
    2811 6k55:C (2.883) BS05 BGC 3.2.1.- GO:0004553 ... A0A4Y1YS11 N/A
    2812 6k55:C (2.883) BS06 BGC 3.2.1.- GO:0004553 ... A0A4Y1YS11 N/A
    2813 6k6v:A (1.98) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    2814 6kkr:A (2.9) BS02 BGC ? GO:0005515 ... Q9UP95 31649201
    2815 6kkr:B (2.9) BS01 BGC ? GO:0005515 ... Q9UP95 31649201
    2816 6kkt:A (2.9) BS02 BGC ? GO:0005515 ... Q9UP95 31649201
    2817 6kkt:B (2.9) BS01 BGC ? GO:0005515 ... Q9UP95 31649201
    2818 6kuf:A (1.9) BS01 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    2819 6l64:A (2.08) BS01 BGC ? GO:0002667 ... Q05315 32081418
    2820 6l64:A (2.08) BS02 BGC ? GO:0002667 ... Q05315 32081418
    2821 6l64:A (2.08) BS03 BGC ? GO:0002667 ... Q05315 32081418
    2822 6lbb:A (1.8) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    2823 6lbv:A (1.89) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    2824 6lge:A (1.75) BS01 BGC 3.2.1.20 GO:0005975 ... A0A077JI83 32381508
    2825 6lge:B (1.75) BS01 BGC 3.2.1.20 GO:0005975 ... A0A077JI83 32381508
    2826 6lgh:A (1.7) BS03 BGC 3.2.1.20 GO:0005975 ... A0A077JI83 32381508
    2827 6lgh:B (1.7) BS03 BGC 3.2.1.20 GO:0005975 ... A0A077JI83 32381508
    2828 6lgi:A (1.6) BS03 BGC 3.2.1.20 GO:0005975 ... A0A077JI83 32381508
    2829 6lgi:B (1.6) BS03 BGC 3.2.1.20 GO:0005975 ... A0A077JI83 32381508
    2830 6ljq:A (1.49) BS01 BGC ? GO:0005575 ... A8MUM7 33011338
    2831 6ljr:A (2.0) BS01 BGC ? GO:0005575 ... A8MUM7 33011338
    2832 6m20:A (2.6) BS01 BGC ? GO:0005886 ... O97467 32860739
    2833 6m20:B (2.6) BS01 BGC ? GO:0005886 ... O97467 32860739
    2834 6m20:C (2.6) BS01 BGC ? GO:0005886 ... O97467 32860739
    2835 6m20:D (2.6) BS01 BGC ? GO:0005886 ... O97467 32860739
    2836 6m5y:A (1.38) BS01 BGC ? GO:0002317 ... P09382 34735570
    2837 6m6p:A (2.27) BS02 BGC ? GO:0004553 ... A0A6F9D674 32917756
    2838 6m8m:A (1.2) BS01 BGC N/A N/A N/A 31335890
    2839 6md6:A (1.68) BS01 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 31110237
    2840 6mgk:A (2.1) BS01 BGC ? N/A A0A1R0YRH0 30463871
    2841 6mgk:B (2.1) BS01 BGC ? N/A A0A1R0YRH0 30463871
    2842 6mgk:C (2.1) BS01 BGC ? N/A A0A1R0YRH0 30463871
    2843 6mgk:D (2.1) BS01 BGC ? N/A A0A1R0YRH0 30463871
    2844 6mgl:A (1.5) BS01 BGC ? N/A A0A1R0YRH0 30463871
    2845 6mgl:A (1.5) BS04 BGC ? N/A A0A1R0YRH0 30463871
    2846 6mgl:A (1.5) BS05 BGC ? N/A A0A1R0YRH0 30463871
    2847 6mgl:A (1.5) BS06 BGC ? N/A A0A1R0YRH0 30463871
    2848 6mi1:A (2.3) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 31110237
    2849 6mvj:A (1.809) BS01 BGC 3.2.1.4 GO:0005576 ... Q1K5M0 31472178
    2850 6mvj:A (1.809) BS02 BGC 3.2.1.4 GO:0005576 ... Q1K5M0 31472178
    2851 6njy:A (1.76) BS01 BGC ? N/A F3ZXK6 31232162
    2852 6njy:A (1.76) BS02 BGC ? N/A F3ZXK6 31232162
    2853 6njy:B (1.76) BS01 BGC ? N/A F3ZXK6 31232162
    2854 6nwh:A (2.03) BS01 BGC ? GO:0006355 ... Q8XMB9 31282473
    2855 6nwh:B (2.03) BS01 BGC ? GO:0006355 ... Q8XMB9 31282473
    2856 6nwj:A (2.16) BS01 BGC ? GO:0006355 ... Q8XMB9 31282473
    2857 6nwj:B (2.16) BS01 BGC ? GO:0006355 ... Q8XMB9 31282473
    2858 6nx3:A (1.87) BS01 BGC ? GO:0006355 ... Q8XMB9 31282473
    2859 6nx3:B (1.87) BS01 BGC ? GO:0006355 ... Q8XMB9 31282473
    2860 6nx3:C (1.87) BS01 BGC ? GO:0006355 ... Q8XMB9 31282473
    2861 6nx3:D (1.87) BS01 BGC ? GO:0006355 ... Q8XMB9 31282473
    2862 6nx3:E (1.87) BS01 BGC ? GO:0006355 ... Q8XMB9 31282473
    2863 6nx3:F (1.87) BS01 BGC ? GO:0006355 ... Q8XMB9 31282473
    2864 6o1w:A (2.2) BS01 BGC ? GO:0000166 ... Q1PLI0 N/A
    2865 6o1w:A (2.2) BS02 BGC ? GO:0000166 ... Q1PLI0 N/A
    2866 6o1w:B (2.2) BS01 BGC ? GO:0000166 ... Q1PLI0 N/A
    2867 6o1w:B (2.2) BS02 BGC ? GO:0000166 ... Q1PLI0 N/A
    2868 6o1x:A (2.46) BS01 BGC ? GO:0000166 ... Q1PLI0 N/A
    2869 6o1x:A (2.46) BS02 BGC ? GO:0000166 ... Q1PLI0 N/A
    2870 6o1y:A (2.7) BS02 BGC ? GO:0000166 ... Q1PLI0 N/A
    2871 6oai:B (1.9) BS01 BGC ? GO:0019028 ... D2DXN5 32208455
    2872 6p2l:A (1.08) BS04 BGC ? N/A G8TAF2 31324716
    2873 6p2l:A (1.08) BS05 BGC ? N/A G8TAF2 31324716
    2874 6p2l:A (1.08) BS06 BGC ? N/A G8TAF2 31324716
    2875 6p2m:A (1.98) BS01 BGC ? N/A G2PXX7 31324716
    2876 6p2m:A (1.98) BS02 BGC ? N/A G2PXX7 31324716
    2877 6p2o:A (1.88) BS01 BGC ? GO:0000272 ... A0A0A0NH71 31324716
    2878 6p2o:A (1.88) BS04 BGC ? GO:0000272 ... A0A0A0NH71 31324716
    2879 6p2o:A (1.88) BS06 BGC ? GO:0000272 ... A0A0A0NH71 31324716
    2880 6p2o:B (1.88) BS01 BGC ? GO:0000272 ... A0A0A0NH71 31324716
    2881 6p2o:B (1.88) BS02 BGC ? GO:0000272 ... A0A0A0NH71 31324716
    2882 6p2o:B (1.88) BS05 BGC ? GO:0000272 ... A0A0A0NH71 31324716
    2883 6q67:A (2.249) BS02 BGC ? N/A Q6DUB6 31845156 MOAD: Kd=0.17uM
    2884 6q68:A (3.161) BS01 BGC ? N/A F1MRE5 31845156
    2885 6q68:A (3.161) BS02 BGC ? N/A F1MRE5 31845156
    2886 6qck:A (1.68) BS03 BGC 1.1.1.62 GO:0004303 ... Q9BPX1 30836176
    2887 6r2j:A (1.44) BS01 BGC ? GO:0000272 ... A4VME5 N/A
    2888 6r2j:A (1.44) BS02 BGC ? GO:0000272 ... A4VME5 N/A
    2889 6r2j:D (1.44) BS01 BGC ? GO:0000272 ... A4VME5 N/A
    2890 6r2j:D (1.44) BS02 BGC ? GO:0000272 ... A4VME5 N/A
    2891 6r2w:L (1.25) BS01 BGC 3.4.21.21 GO:0005509 ... P08709 31801825
    2892 6r31:A (2.6) BS01 BGC 3.2.1.4 GO:0008810 ... P16218 31794092
    2893 6r31:A (2.6) BS02 BGC 3.2.1.4 GO:0008810 ... P16218 31794092
    2894 6r31:A (2.6) BS03 BGC 3.2.1.4 GO:0008810 ... P16218 31794092
    2895 6r3m:A (1.45) BS01 BGC 3.2.1.4 GO:0008810 ... P16218 31794092
    2896 6r3m:A (1.45) BS02 BGC 3.2.1.4 GO:0008810 ... P16218 31794092
    2897 6r3m:A (1.45) BS03 BGC 3.2.1.4 GO:0008810 ... P16218 31794092
    2898 6r3m:A (1.45) BS04 BGC 3.2.1.4 GO:0008810 ... P16218 31794092
    2899 6r5o:A (2.4) BS01 BGC 3.2.1.21 GO:0004553 ... Q9I311 31877028
    2900 6r5o:B (2.4) BS01 BGC 3.2.1.21 GO:0004553 ... Q9I311 31877028
    2901 6r5p:A (2.85) BS01 BGC 3.2.1.21 GO:0004553 ... Q9I311 31877028
    2902 6r5p:B (2.85) BS01 BGC 3.2.1.21 GO:0004553 ... Q9I311 31877028
    2903 6r5r:A (1.65) BS01 BGC 3.2.1.21 GO:0004553 ... Q9I311 31877028
    2904 6r5r:A (1.65) BS02 BGC 3.2.1.21 GO:0004553 ... Q9I311 31877028
    2905 6r5r:B (1.65) BS01 BGC 3.2.1.21 GO:0004553 ... Q9I311 31877028
    2906 6r5r:B (1.65) BS02 BGC 3.2.1.21 GO:0004553 ... Q9I311 31877028
    2907 6r5t:A (1.6) BS01 BGC 3.2.1.21 GO:0004553 ... Q9I311 31877028
    2908 6r5t:B (1.6) BS01 BGC 3.2.1.21 GO:0004553 ... Q9I311 31877028
    2909 6r5u:A (2.15) BS01 BGC 3.2.1.21 GO:0004553 ... Q9I311 31877028
    2910 6r5u:B (2.15) BS01 BGC 3.2.1.21 GO:0004553 ... Q9I311 31877028
    2911 6rfh:A (0.969) BS02 BGC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    2912 6rfz:A (1.8) BS01 BGC ? N/A Q7N8I8 32559333 MOAD: Kd=3.56mM
    2913 6rfz:A (1.8) BS02 BGC ? N/A Q7N8I8 32559333 MOAD: Kd=3.56mM
    2914 6rfz:A (1.8) BS03 BGC ? N/A Q7N8I8 32559333 MOAD: Kd=3.56mM
    2915 6rfz:A (1.8) BS04 BGC ? N/A Q7N8I8 32559333 MOAD: Kd=3.56mM
    2916 6rgj:A (1.8) BS01 BGC ? GO:0046872 ... C7BLE4 32559333
    2917 6rgj:A (1.8) BS02 BGC ? GO:0046872 ... C7BLE4 32559333
    2918 6rgj:A (1.8) BS03 BGC ? GO:0046872 ... C7BLE4 32559333
    2919 6rgj:A (1.8) BS04 BGC ? GO:0046872 ... C7BLE4 32559333
    2920 6rh4:A (0.948) BS02 BGC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32230853
    2921 6rh4:A (0.948) BS03 BGC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32230853
    2922 6rig:A (0.999) BS03 BGC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    2923 6rit:A (1.007) BS01 BGC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32230853
    2924 6rit:A (1.007) BS02 BGC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32230853
    2925 6rjj:A (1.056) BS02 BGC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32230853
    2926 6rkn:A (0.959) BS03 BGC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32230853
    2927 6rkn:A (0.959) BS04 BGC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32230853
    2928 6rl9:A (1.0) BS05 BGC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32230853
    2929 6rl9:A (1.0) BS06 BGC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32230853
    2930 6rnp:A (1.07) BS04 BGC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32230853
    2931 6rnp:A (1.07) BS05 BGC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32230853
    2932 6rob:A (0.929) BS01 BGC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32230853
    2933 6rob:A (0.929) BS02 BGC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32230853
    2934 6roe:A (0.939) BS01 BGC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32230853
    2935 6roe:A (0.939) BS02 BGC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32230853
    2936 6rqi:A (0.95) BS02 BGC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32230853
    2937 6rqi:A (0.95) BS03 BGC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32230853
    2938 6rrg:A (1.127) BS02 BGC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32230853
    2939 6rrg:A (1.127) BS03 BGC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32230853
    2940 6rri:A (1.097) BS05 BGC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32230853
    2941 6rs5:A (1.07) BS02 BGC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32230853
    2942 6rsz:A (1.089) BS02 BGC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32230853
    2943 6rur:V (6.0) BS01 BGC ? N/A P27918 31507604
    2944 6rur:Y (6.0) BS01 BGC ? N/A P27918 31507604
    2945 6rus:A (2.8) BS01 BGC ? N/A P27918 31507604
    2946 6rus:A (2.8) BS02 BGC ? N/A P27918 31507604
    2947 6rus:B (2.8) BS02 BGC ? N/A P27918 31507604
    2948 6ruv:V (6.15) BS01 BGC ? N/A P27918 31507604
    2949 6ruv:Y (6.15) BS02 BGC ? N/A P27918 31507604
    2950 6rv6:B (3.507) BS02 BGC ? N/A P27918 31507604
    2951 6rw3:A (3.65) BS02 BGC ? GO:0005886 ... O97467 31996846
    2952 6rw3:B (3.65) BS02 BGC ? GO:0005886 ... O97467 31996846
    2953 6rw3:C (3.65) BS02 BGC ? GO:0005886 ... O97467 31996846
    2954 6rw3:D (3.65) BS02 BGC ? GO:0005886 ... O97467 31996846
    2955 6ry7:A (1.3) BS01 BGC 3.2.1.101 GO:0005975 ... G0S3F2 32839341
    2956 6s2i:E (2.285) BS01 BGC N/A N/A N/A 34735569
    2957 6s9g:A (1.14) BS02 BGC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32230853
    2958 6sao:A (1.2) BS01 BGC N/A GO:0004556 ... N/A 31623309
    2959 6sau:A (1.35) BS01 BGC N/A GO:0004556 ... N/A 31623309
    2960 6sau:B (1.35) BS01 BGC N/A GO:0004556 ... N/A 31623309
    2961 6sbh:A (0.95) BS03 BGC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32027480
    2962 6sbh:A (0.95) BS04 BGC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32027480
    2963 6sd7:A (1.05) BS04 BGC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32230853
    2964 6sdu:A (2.2) BS01 BGC ? GO:0000272 ... M4PUR5 32555346
    2965 6sdu:D (2.2) BS01 BGC ? GO:0000272 ... M4PUR5 32555346
    2966 6sea:A (1.869) BS01 BGC 3.2.1.23 GO:0003824 ... A0A023UGN9 31484304
    2967 6sej:B (3.501) BS02 BGC ? N/A P27918 31507604
    2968 6sey:A (1.23) BS02 BGC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    2969 6sey:A (1.23) BS03 BGC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    2970 6sz6:A (2.988) BS05 BGC 3.2.1.21 GO:0000272 ... A6YRT4 31783503
    2971 6uar:A (1.4) BS01 BGC N/A N/A N/A 32451508
    2972 6uar:A (1.4) BS02 BGC N/A N/A N/A 32451508
    2973 6uas:A (1.91) BS02 BGC N/A N/A N/A 32451508
    2974 6uat:A (1.9) BS01 BGC N/A N/A N/A 32451508
    2975 6uat:A (1.9) BS02 BGC N/A N/A N/A 32451508
    2976 6uau:A (1.9) BS01 BGC N/A N/A N/A 32451508
    2977 6uau:A (1.9) BS02 BGC N/A N/A N/A 32451508
    2978 6uaw:A (1.5) BS01 BGC ? GO:0009277 ... A0A1Y6JJH6 32451508
    2979 6uaw:A (1.5) BS02 BGC ? GO:0009277 ... A0A1Y6JJH6 32451508
    2980 6uaz:A (1.85) BS01 BGC ? GO:0009277 ... A0A179UGT5 32451508
    2981 6uaz:B (1.85) BS01 BGC ? GO:0009277 ... A0A179UGT5 32451508
    2982 6ub0:A (1.75) BS02 BGC ? GO:0009277 ... A0A179UGT5 32451508
    2983 6ub1:A (1.6) BS01 BGC ? GO:0009277 ... A0A179UGT5 32451508
    2984 6ub1:A (1.6) BS02 BGC ? GO:0009277 ... A0A179UGT5 32451508
    2985 6ub1:B (1.6) BS01 BGC ? GO:0009277 ... A0A179UGT5 32451508
    2986 6ub1:C (1.6) BS01 BGC ? GO:0009277 ... A0A179UGT5 32451508
    2987 6ub1:C (1.6) BS02 BGC ? GO:0009277 ... A0A179UGT5 32451508
    2988 6ub1:D (1.6) BS01 BGC ? GO:0009277 ... A0A179UGT5 32451508
    2989 6ub1:D (1.6) BS02 BGC ? GO:0009277 ... A0A179UGT5 32451508
    2990 6ub3:A (1.85) BS01 BGC ? GO:0009277 ... G9M5R4 32451508
    2991 6ub3:A (1.85) BS02 BGC ? GO:0009277 ... G9M5R4 32451508
    2992 6ub3:B (1.85) BS01 BGC ? GO:0009277 ... G9M5R4 32451508
    2993 6ub3:B (1.85) BS02 BGC ? GO:0009277 ... G9M5R4 32451508
    2994 6ub4:A (1.6) BS01 BGC ? GO:0009277 ... G9M5R4 32451508
    2995 6ub4:A (1.6) BS02 BGC ? GO:0009277 ... G9M5R4 32451508
    2996 6ub4:A (1.6) BS03 BGC ? GO:0009277 ... G9M5R4 32451508
    2997 6ub4:A (1.6) BS04 BGC ? GO:0009277 ... G9M5R4 32451508
    2998 6ub4:A (1.6) BS05 BGC ? GO:0009277 ... G9M5R4 32451508
    2999 6ub4:B (1.6) BS01 BGC ? GO:0009277 ... G9M5R4 32451508
    3000 6ub4:B (1.6) BS02 BGC ? GO:0009277 ... G9M5R4 32451508
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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