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BioLiP
Download all results in tab-seperated text for 3964 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2601 6d5d:A (1.9) BS01 BGC 3.2.1.- GO:0004553 ... A0A4V8GZQ9 N/A
    2602 6d5d:A (1.9) BS02 BGC 3.2.1.- GO:0004553 ... A0A4V8GZQ9 N/A
    2603 6d5d:A (1.9) BS03 BGC 3.2.1.- GO:0004553 ... A0A4V8GZQ9 N/A
    2604 6d5d:A (1.9) BS04 BGC 3.2.1.- GO:0004553 ... A0A4V8GZQ9 N/A
    2605 6da0:A (2.2) BS01 BGC 2.7.1.2 GO:0004340 ... A0A384E136 30783001
    2606 6dmf:A (2.4) BS01 BGC N/A N/A N/A 31062073
    2607 6dmf:A (2.4) BS02 BGC N/A N/A N/A 31062073
    2608 6dmf:A (2.4) BS03 BGC N/A N/A N/A 31062073
    2609 6dmf:A (2.4) BS04 BGC N/A N/A N/A 31062073
    2610 6dmf:B (2.4) BS01 BGC N/A N/A N/A 31062073
    2611 6dmf:C (2.4) BS01 BGC N/A N/A N/A 31062073
    2612 6dmf:C (2.4) BS02 BGC N/A N/A N/A 31062073
    2613 6dmf:C (2.4) BS03 BGC N/A N/A N/A 31062073
    2614 6dmf:D (2.4) BS01 BGC N/A N/A N/A 31062073
    2615 6dmf:D (2.4) BS02 BGC N/A N/A N/A 31062073
    2616 6dmf:D (2.4) BS03 BGC N/A N/A N/A 31062073
    2617 6dmf:D (2.4) BS04 BGC N/A N/A N/A 31062073
    2618 6dmf:E (2.4) BS01 BGC N/A N/A N/A 31062073
    2619 6dmf:E (2.4) BS02 BGC N/A N/A N/A 31062073
    2620 6dmf:E (2.4) BS03 BGC N/A N/A N/A 31062073
    2621 6dmf:F (2.4) BS01 BGC N/A N/A N/A 31062073
    2622 6dmf:F (2.4) BS02 BGC N/A N/A N/A 31062073
    2623 6dmf:F (2.4) BS03 BGC N/A N/A N/A 31062073
    2624 6dmf:G (2.4) BS01 BGC N/A N/A N/A 31062073
    2625 6dmf:G (2.4) BS02 BGC N/A N/A N/A 31062073
    2626 6dmf:G (2.4) BS03 BGC N/A N/A N/A 31062073
    2627 6dmf:H (2.4) BS01 BGC N/A N/A N/A 31062073
    2628 6dmf:H (2.4) BS02 BGC N/A N/A N/A 31062073
    2629 6dmf:I (2.4) BS01 BGC N/A N/A N/A 31062073
    2630 6dmf:I (2.4) BS02 BGC N/A N/A N/A 31062073
    2631 6dmf:J (2.4) BS01 BGC N/A N/A N/A 31062073
    2632 6dmf:J (2.4) BS02 BGC N/A N/A N/A 31062073
    2633 6dru:A (2.7) BS05 BGC 3.2.1.177 GO:0003824 ... A2QTU5 32161692
    2634 6dru:A (2.7) BS06 BGC 3.2.1.177 GO:0003824 ... A2QTU5 32161692
    2635 6dru:B (2.7) BS05 BGC 3.2.1.177 GO:0003824 ... A2QTU5 32161692
    2636 6e0w:A (1.803) BS01 BGC ? N/A I7I026 N/A
    2637 6e0w:B (1.803) BS01 BGC ? N/A I7I026 N/A
    2638 6e61:A (2.51) BS01 BGC N/A N/A N/A 31062073
    2639 6e61:A (2.51) BS02 BGC N/A N/A N/A 31062073
    2640 6e61:A (2.51) BS03 BGC N/A N/A N/A 31062073
    2641 6e61:B (2.51) BS01 BGC N/A N/A N/A 31062073
    2642 6e61:B (2.51) BS02 BGC N/A N/A N/A 31062073
    2643 6e61:B (2.51) BS03 BGC N/A N/A N/A 31062073
    2644 6e9b:D (3.15) BS01 BGC N/A N/A N/A 31062073
    2645 6er4:A (1.3) BS01 BGC ? GO:0004308 ... A7B557 29259165 PDBbind: -logKd/Ki=2.77, Kd=1.70mM
    2646 6er4:B (1.3) BS01 BGC ? GO:0004308 ... A7B557 29259165 PDBbind: -logKd/Ki=2.77, Kd=1.70mM
    2647 6ev2:A (2.403) BS01 BGC N/A N/A N/A 30209318
    2648 6ev2:B (2.403) BS01 BGC N/A N/A N/A 30209318
    2649 6ev2:C (2.403) BS01 BGC N/A N/A N/A 30209318
    2650 6ev2:D (2.403) BS01 BGC N/A N/A N/A 30209318
    2651 6eym:A (1.1) BS01 BGC ? N/A P17931 29672051
    2652 6ffb:A (1.65) BS02 BGC 1.1.1.62 GO:0004303 ... Q9BPX1 30836176
    2653 6fof:A (2.2) BS01 BGC ? GO:0030246 ... P17931 29959397
    2654 6fof:B (2.2) BS02 BGC ? GO:0030246 ... P17931 29959397
    2655 6fof:C (2.2) BS01 BGC ? GO:0030246 ... P17931 29959397
    2656 6fof:D (2.2) BS02 BGC ? GO:0030246 ... P17931 29959397
    2657 6fof:E (2.2) BS01 BGC ? GO:0030246 ... P17931 29959397
    2658 6fof:F (2.2) BS01 BGC ? GO:0030246 ... P17931 29959397
    2659 6fof:G (2.2) BS02 BGC ? GO:0030246 ... P17931 29959397
    2660 6fof:H (2.2) BS01 BGC ? GO:0030246 ... P17931 29959397
    2661 6fof:H (2.2) BS03 BGC ? GO:0030246 ... P17931 29959397
    2662 6fof:I (2.2) BS01 BGC ? GO:0030246 ... P17931 29959397
    2663 6fof:J (2.2) BS02 BGC ? GO:0030246 ... P17931 29959397
    2664 6fof:K (2.2) BS01 BGC ? GO:0030246 ... P17931 29959397
    2665 6fof:L (2.2) BS02 BGC ? GO:0030246 ... P17931 29959397
    2666 6g1g:A (1.04) BS01 BGC ? N/A A3DCJ4 30084399
    2667 6g1g:A (1.04) BS02 BGC ? N/A A3DCJ4 30084399
    2668 6g1g:A (1.04) BS03 BGC ? N/A A3DCJ4 30084399
    2669 6g1g:A (1.04) BS04 BGC ? N/A A3DCJ4 30084399
    2670 6g1g:A (1.04) BS05 BGC ? N/A A3DCJ4 30084399
    2671 6g1g:A (1.04) BS06 BGC ? N/A A3DCJ4 30084399
    2672 6g1i:A (0.99) BS02 BGC ? N/A A3DCJ4 30084399
    2673 6g1i:A (0.99) BS03 BGC ? N/A A3DCJ4 30084399
    2674 6g1i:A (0.99) BS04 BGC ? N/A A3DCJ4 30084399
    2675 6g1i:A (0.99) BS05 BGC ? N/A A3DCJ4 30084399
    2676 6g1i:A (0.99) BS06 BGC ? N/A A3DCJ4 30084399
    2677 6g1i:A (0.99) BS07 BGC ? N/A A3DCJ4 30084399
    2678 6g1i:B (0.99) BS01 BGC ? N/A A3DCJ4 30084399
    2679 6g1i:B (0.99) BS03 BGC ? N/A A3DCJ4 30084399
    2680 6g1i:B (0.99) BS04 BGC ? N/A A3DCJ4 30084399
    2681 6g1i:B (0.99) BS05 BGC ? N/A A3DCJ4 30084399
    2682 6g1i:B (0.99) BS06 BGC ? N/A A3DCJ4 30084399
    2683 6g1i:B (0.99) BS07 BGC ? N/A A3DCJ4 30084399
    2684 6g1i:B (0.99) BS08 BGC ? N/A A3DCJ4 30084399
    2685 6g1i:B (0.99) BS09 BGC ? N/A A3DCJ4 30084399
    2686 6g4l:A (1.444) BS02 BGC 1.1.1.62 GO:0004303 ... Q9BPX1 N/A
    2687 6gdc:A (1.079) BS02 BGC 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32027480
    2688 6gl0:A (2.2) BS02 BGC 3.2.1.4 GO:0000272 ... G0L8Z3 30341165
    2689 6gl0:B (2.2) BS02 BGC 3.2.1.4 GO:0000272 ... G0L8Z3 30341165
    2690 6gl0:C (2.2) BS02 BGC 3.2.1.4 GO:0000272 ... G0L8Z3 30341165
    2691 6gm9:A (1.089) BS02 BGC 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32027480
    2692 6gm9:A (1.089) BS03 BGC 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32027480
    2693 6gnf:A (2.2) BS01 BGC 2.4.1.21
    2.4.1.242
    GO:0000166 ... V5SNJ5 30123236
    2694 6gnf:C (2.2) BS01 BGC 2.4.1.21
    2.4.1.242
    GO:0000166 ... V5SNJ5 30123236
    2695 6gng:A (2.95) BS01 BGC ? GO:0000166 ... A8V967 30123236
    2696 6gng:B (2.95) BS01 BGC ? GO:0000166 ... A8V967 30123236
    2697 6gsz:A (1.38) BS06 BGC 3.2.1.40 GO:0005975 ... I0AZ41 30387766
    2698 6gtb:A (1.619) BS02 BGC 1.1.1.62 GO:0004303 ... Q9BPX1 N/A
    2699 6guq:A (2.385) BS01 BGC ? GO:0030246 ... W8QN64 N/A
    2700 6gxv:A (2.07) BS12 BGC ? GO:0004553 ... A0A3P8MUS3 30644839
    2701 6gxv:A (2.07) BS14 BGC ? GO:0004553 ... A0A3P8MUS3 30644839
    2702 6gxv:B (2.07) BS08 BGC ? GO:0004553 ... A0A3P8MUS3 30644839
    2703 6gxv:B (2.07) BS10 BGC ? GO:0004553 ... A0A3P8MUS3 30644839
    2704 6gya:B (2.95) BS07 BGC ? GO:0004553 ... A0A3P8MUS3 30644839
    2705 6gya:D (2.95) BS07 BGC ? GO:0004553 ... A0A3P8MUS3 30644839
    2706 6h0m:A (1.25) BS02 BGC 1.1.1.62 GO:0004303 ... Q9BPX1 N/A
    2707 6h7d:A (2.4) BS01 BGC ? GO:0005354 ... Q9LT15 30679446 MOAD: Kd=3.2uM
    PDBbind: -logKd/Ki=5.49, Ki=3.2uM
    2708 6ha9:A (2.0) BS02 BGC 3.2.1.4 GO:0000272 ... B3PD52 30387796
    2709 6ha9:A (2.0) BS03 BGC 3.2.1.4 GO:0000272 ... B3PD52 30387796
    2710 6ha9:B (2.0) BS02 BGC 3.2.1.4 GO:0000272 ... B3PD52 30387796
    2711 6ha9:B (2.0) BS03 BGC 3.2.1.4 GO:0000272 ... B3PD52 30387796
    2712 6haa:A (1.7) BS02 BGC 3.2.1.4 GO:0000272 ... B3PD52 30387796
    2713 6haa:A (1.7) BS03 BGC 3.2.1.4 GO:0000272 ... B3PD52 30387796
    2714 6haa:B (1.7) BS02 BGC 3.2.1.4 GO:0000272 ... B3PD52 30387796
    2715 6haa:B (1.7) BS03 BGC 3.2.1.4 GO:0000272 ... B3PD52 30387796
    2716 6hq8:A (2.25) BS01 BGC N/A N/A N/A 31134667
    2717 6hq8:A (2.25) BS02 BGC N/A N/A N/A 31134667
    2718 6hq8:A (2.25) BS03 BGC N/A N/A N/A 31134667
    2719 6hq8:A (2.25) BS04 BGC N/A N/A N/A 31134667
    2720 6hq8:A (2.25) BS05 BGC N/A N/A N/A 31134667
    2721 6hq8:B (2.25) BS01 BGC N/A N/A N/A 31134667
    2722 6hq8:B (2.25) BS02 BGC N/A N/A N/A 31134667
    2723 6hq8:B (2.25) BS03 BGC N/A N/A N/A 31134667
    2724 6hq8:B (2.25) BS04 BGC N/A N/A N/A 31134667
    2725 6hq8:B (2.25) BS05 BGC N/A N/A N/A 31134667
    2726 6hqx:A (1.097) BS02 BGC 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32027480
    2727 6hr3:A (1.02) BS02 BGC 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32027480
    2728 6hus:A (1.409) BS03 BGC ? GO:0015768 ... A0A1S2VYK0 31489370
    2729 6hxd:A (1.119) BS02 BGC 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32027480
    2730 6i0w:A (1.04) BS02 BGC 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32027480
    2731 6i0w:A (1.04) BS03 BGC 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32027480
    2732 6i1u:A (1.08) BS02 BGC 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32027480
    2733 6i2f:A (1.198) BS02 BGC 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32027480
    2734 6idw:A (2.78) BS01 BGC 3.2.1.- GO:0004553 ... A0A076U926 31793907
    2735 6idw:B (2.78) BS01 BGC 3.2.1.- GO:0004553 ... A0A076U926 31793907
    2736 6idw:C (2.78) BS01 BGC 3.2.1.- GO:0004553 ... A0A076U926 31793907
    2737 6idw:C (2.78) BS02 BGC 3.2.1.- GO:0004553 ... A0A076U926 31793907
    2738 6idw:D (2.78) BS01 BGC 3.2.1.- GO:0004553 ... A0A076U926 31793907
    2739 6idw:D (2.78) BS02 BGC 3.2.1.- GO:0004553 ... A0A076U926 31793907
    2740 6imv:A (2.0) BS02 BGC 3.2.1.71 GO:0033913 ... A0A4V8H012 30926603
    2741 6imv:A (2.0) BS03 BGC 3.2.1.71 GO:0033913 ... A0A4V8H012 30926603
    2742 6imv:B (2.0) BS02 BGC 3.2.1.71 GO:0033913 ... A0A4V8H012 30926603
    2743 6imv:B (2.0) BS03 BGC 3.2.1.71 GO:0033913 ... A0A4V8H012 30926603
    2744 6imw:A (2.1) BS01 BGC 3.2.1.71 GO:0033913 ... A0A4V8H013 30926603
    2745 6imw:A (2.1) BS02 BGC 3.2.1.71 GO:0033913 ... A0A4V8H013 30926603
    2746 6imw:A (2.1) BS03 BGC 3.2.1.71 GO:0033913 ... A0A4V8H013 30926603
    2747 6imw:A (2.1) BS04 BGC 3.2.1.71 GO:0033913 ... A0A4V8H013 30926603
    2748 6imw:A (2.1) BS05 BGC 3.2.1.71 GO:0033913 ... A0A4V8H013 30926603
    2749 6imw:B (2.1) BS01 BGC 3.2.1.71 GO:0033913 ... A0A4V8H013 30926603
    2750 6imw:B (2.1) BS02 BGC 3.2.1.71 GO:0033913 ... A0A4V8H013 30926603
    2751 6imw:B (2.1) BS03 BGC 3.2.1.71 GO:0033913 ... A0A4V8H013 30926603
    2752 6imw:B (2.1) BS04 BGC 3.2.1.71 GO:0033913 ... A0A4V8H013 30926603
    2753 6imw:B (2.1) BS05 BGC 3.2.1.71 GO:0033913 ... A0A4V8H013 30926603
    2754 6jfp:A (2.7) BS01 BGC 3.2.1.21 GO:0004553 ... A0A5B9BHU3 32338906
    2755 6jg1:A (1.78) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    2756 6jg6:A (1.55) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    2757 6jg7:A (2.16) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    2758 6jgb:A (1.47) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    2759 6jgd:A (2.13) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    2760 6jge:A (1.92) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    2761 6jgg:A (1.9) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    2762 6jgk:A (1.66) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    2763 6jgl:A (1.92) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    2764 6jgo:A (1.95) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    2765 6jgp:A (1.99) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    2766 6jgq:A (2.01) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    2767 6jgs:A (2.03) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    2768 6jgt:A (1.82) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    2769 6jia:A (1.9) BS02 BGC N/A GO:0004553 ... N/A 32917756
    2770 6jia:A (1.9) BS03 BGC N/A GO:0004553 ... N/A 32917756
    2771 6jj7:A (2.9) BS01 BGC 2.7.1.1 GO:0001678 ... Q8LQ68 N/A
    2772 6jj7:C (2.9) BS01 BGC 2.7.1.1 GO:0001678 ... Q8LQ68 N/A
    2773 6jj7:E (2.9) BS01 BGC 2.7.1.1 GO:0001678 ... Q8LQ68 N/A
    2774 6jj9:A (3.0) BS02 BGC 2.7.1.1 GO:0001678 ... Q8LQ68 N/A
    2775 6jj9:C (3.0) BS02 BGC 2.7.1.1 GO:0001678 ... Q8LQ68 N/A
    2776 6jj9:E (3.0) BS02 BGC 2.7.1.1 GO:0001678 ... Q8LQ68 N/A
    2777 6jjm:A (2.049) BS01 BGC ? GO:0004308 ... Q9WAF5 31118251
    2778 6jjm:B (2.049) BS01 BGC ? GO:0004308 ... Q9WAF5 31118251
    2779 6k0q:A (1.564) BS05 BGC ? N/A A0A068PS59 31788942
    2780 6k0s:A (1.534) BS05 BGC ? N/A A0A068PS59 31788942
    2781 6k0v:B (2.504) BS01 BGC ? N/A A0A068PS59 31788942
    2782 6k54:A (1.905) BS02 BGC N/A GO:0004553 ... N/A N/A
    2783 6k54:A (1.905) BS03 BGC N/A GO:0004553 ... N/A N/A
    2784 6k54:A (1.905) BS04 BGC N/A GO:0004553 ... N/A N/A
    2785 6k54:A (1.905) BS05 BGC N/A GO:0004553 ... N/A N/A
    2786 6k54:A (1.905) BS06 BGC N/A GO:0004553 ... N/A N/A
    2787 6k54:B (1.905) BS01 BGC N/A GO:0004553 ... N/A N/A
    2788 6k54:B (1.905) BS02 BGC N/A GO:0004553 ... N/A N/A
    2789 6k54:B (1.905) BS03 BGC N/A GO:0004553 ... N/A N/A
    2790 6k54:C (1.905) BS01 BGC N/A GO:0004553 ... N/A N/A
    2791 6k54:C (1.905) BS02 BGC N/A GO:0004553 ... N/A N/A
    2792 6k54:C (1.905) BS03 BGC N/A GO:0004553 ... N/A N/A
    2793 6k55:A (2.883) BS01 BGC 3.2.1.- GO:0004553 ... A0A4Y1YS11 N/A
    2794 6k55:A (2.883) BS02 BGC 3.2.1.- GO:0004553 ... A0A4Y1YS11 N/A
    2795 6k55:A (2.883) BS03 BGC 3.2.1.- GO:0004553 ... A0A4Y1YS11 N/A
    2796 6k55:A (2.883) BS04 BGC 3.2.1.- GO:0004553 ... A0A4Y1YS11 N/A
    2797 6k55:A (2.883) BS05 BGC 3.2.1.- GO:0004553 ... A0A4Y1YS11 N/A
    2798 6k55:A (2.883) BS06 BGC 3.2.1.- GO:0004553 ... A0A4Y1YS11 N/A
    2799 6k55:A (2.883) BS07 BGC 3.2.1.- GO:0004553 ... A0A4Y1YS11 N/A
    2800 6k55:B (2.883) BS01 BGC 3.2.1.- GO:0004553 ... A0A4Y1YS11 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417