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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 3964 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2001 5eiy:A (2.95) BS01 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2002 5eiy:A (2.95) BS02 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2003 5eiy:A (2.95) BS03 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2004 5eiy:A (2.95) BS04 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2005 5eiy:A (2.95) BS05 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2006 5eiy:A (2.95) BS06 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2007 5eiy:A (2.95) BS07 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2008 5eiy:A (2.95) BS08 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2009 5eiy:A (2.95) BS09 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2010 5eiy:A (2.95) BS10 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2011 5eiy:B (2.95) BS01 BGC ? GO:0005515 ... Q3J126 26958837
    2012 5eiy:B (2.95) BS02 BGC ? GO:0005515 ... Q3J126 26958837
    2013 5ej1:A (3.4) BS01 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2014 5ej1:A (3.4) BS02 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2015 5ej1:A (3.4) BS03 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2016 5ej1:A (3.4) BS04 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2017 5ej1:A (3.4) BS05 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2018 5ej1:A (3.4) BS06 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2019 5ej1:A (3.4) BS07 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2020 5ej1:A (3.4) BS08 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2021 5ej1:A (3.4) BS09 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2022 5ej1:A (3.4) BS10 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2023 5ej1:A (3.4) BS11 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2024 5ej1:A (3.4) BS12 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2025 5ej1:B (3.4) BS02 BGC ? GO:0005515 ... Q3J126 26958837
    2026 5ejz:A (2.94) BS01 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2027 5ejz:A (2.94) BS02 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2028 5ejz:A (2.94) BS03 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2029 5ejz:A (2.94) BS04 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2030 5ejz:A (2.94) BS05 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2031 5ejz:A (2.94) BS06 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2032 5ejz:A (2.94) BS07 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2033 5ejz:A (2.94) BS08 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2034 5ejz:A (2.94) BS09 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2035 5ejz:A (2.94) BS10 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2036 5ejz:A (2.94) BS11 BGC 2.4.1.12 GO:0000166 ... Q3J125 26958837
    2037 5ejz:B (2.94) BS02 BGC ? GO:0006011 ... Q3J126 26958837
    2038 5eqc:A (2.2) BS02 BGC 2.6.1.13 GO:0004587 ... S8EY38 N/A
    2039 5eqc:B (2.2) BS01 BGC 2.6.1.13 GO:0004587 ... S8EY38 N/A
    2040 5eqc:B (2.2) BS02 BGC 2.6.1.13 GO:0004587 ... S8EY38 N/A
    2041 5eqc:B (2.2) BS03 BGC 2.6.1.13 GO:0004587 ... S8EY38 N/A
    2042 5ews:C (2.0) BS01 BGC ? GO:0005515 ... P05162 27563008
    2043 5ews:D (2.0) BS01 BGC ? GO:0005515 ... P05162 27563008
    2044 5ews:G (2.0) BS01 BGC ? GO:0005515 ... P05162 27563008
    2045 5ews:H (2.0) BS01 BGC ? GO:0005515 ... P05162 27563008
    2046 5ews:I (2.0) BS01 BGC ? GO:0005515 ... P05162 27563008
    2047 5ews:J (2.0) BS01 BGC ? GO:0005515 ... P05162 27563008
    2048 5ews:K (2.0) BS01 BGC ? GO:0005515 ... P05162 27563008
    2049 5ews:M (2.0) BS01 BGC ? GO:0005515 ... P05162 27563008
    2050 5f7w:A (2.81) BS01 BGC ? N/A O52269 26764597
    2051 5f84:A (2.5) BS02 BGC 2.4.1.- GO:0005783 ... Q8T045 27428513
    2052 5fih:A (1.8) BS02 BGC 2.4.1.- N/A Q06135 26859322
    2053 5fih:A (1.8) BS03 BGC 2.4.1.- N/A Q06135 26859322
    2054 5fih:A (1.8) BS04 BGC 2.4.1.- N/A Q06135 26859322
    2055 5fih:A (1.8) BS05 BGC 2.4.1.- N/A Q06135 26859322
    2056 5fih:A (1.8) BS07 BGC 2.4.1.- N/A Q06135 26859322
    2057 5fih:A (1.8) BS08 BGC 2.4.1.- N/A Q06135 26859322
    2058 5fks:A (1.99) BS01 BGC 3.2.1.- N/A B3PKK9 26929175
    2059 5fks:A (1.99) BS04 BGC 3.2.1.- N/A B3PKK9 26929175
    2060 5fks:A (1.99) BS05 BGC 3.2.1.- N/A B3PKK9 26929175
    2061 5fr2:B (3.35) BS02 BGC ? GO:0001772 ... P19803 26719334
    2062 5fu3:A (1.61) BS01 BGC ? GO:0046872 ... A0A1A9TAF4 27298375
    2063 5fu3:A (1.61) BS02 BGC ? GO:0046872 ... A0A1A9TAF4 27298375
    2064 5fu3:B (1.61) BS01 BGC ? GO:0046872 ... A0A1A9TAF4 27298375
    2065 5fu3:B (1.61) BS02 BGC ? GO:0046872 ... A0A1A9TAF4 27298375
    2066 5gly:A (1.58) BS01 BGC 3.2.1.4 GO:0005975 ... G2QVH7 28193329
    2067 5gly:A (1.58) BS02 BGC 3.2.1.4 GO:0005975 ... G2QVH7 28193329
    2068 5gly:A (1.58) BS03 BGC 3.2.1.4 GO:0005975 ... G2QVH7 28193329
    2069 5gly:A (1.58) BS04 BGC 3.2.1.4 GO:0005975 ... G2QVH7 28193329
    2070 5gly:A (1.58) BS05 BGC 3.2.1.4 GO:0005975 ... G2QVH7 28193329
    2071 5glz:A (2.0) BS01 BGC ? GO:0005886 ... A0A1L1QJZ7 27742836 MOAD: Kd=78uM
    2072 5glz:B (2.0) BS01 BGC ? GO:0005886 ... A0A1L1QJZ7 27742836 MOAD: Kd=78uM
    2073 5glz:C (2.0) BS01 BGC ? GO:0005886 ... A0A1L1QJZ7 27742836 MOAD: Kd=78uM
    2074 5gm0:A (1.7) BS01 BGC ? GO:0005886 ... A0A1L1QJZ7 27742836
    2075 5gm0:B (1.7) BS01 BGC ? GO:0005886 ... A0A1L1QJZ7 27742836
    2076 5gm4:A (1.92) BS01 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2077 5gm4:A (1.92) BS02 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2078 5gm4:A (1.92) BS03 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2079 5gm4:A (1.92) BS04 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2080 5gm4:A (1.92) BS05 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2081 5gm4:B (1.92) BS01 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2082 5gm4:B (1.92) BS02 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2083 5gm4:B (1.92) BS03 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2084 5gm4:B (1.92) BS04 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2085 5gm4:C (1.92) BS01 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2086 5gm4:C (1.92) BS02 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2087 5gm4:C (1.92) BS03 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2088 5gm4:C (1.92) BS04 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2089 5gm4:D (1.92) BS01 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2090 5gm4:D (1.92) BS02 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2091 5gm4:D (1.92) BS03 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2092 5gm4:D (1.92) BS04 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2093 5gm4:E (1.92) BS01 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2094 5gm4:E (1.92) BS02 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2095 5gm4:E (1.92) BS03 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2096 5gm4:E (1.92) BS04 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2097 5gm4:F (1.92) BS01 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2098 5gm4:F (1.92) BS02 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2099 5gm4:F (1.92) BS03 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2100 5gm4:G (1.92) BS01 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2101 5gm4:G (1.92) BS02 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2102 5gm4:G (1.92) BS03 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2103 5gm4:G (1.92) BS04 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2104 5gm5:A (1.73) BS01 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2105 5gm5:A (1.73) BS02 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2106 5gm5:D (1.73) BS01 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2107 5gm5:D (1.73) BS02 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2108 5gm5:F (1.73) BS01 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2109 5gm5:F (1.73) BS02 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2110 5gm5:G (1.73) BS01 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2111 5gm5:G (1.73) BS02 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    2112 5gm9:A (1.36) BS02 BGC 3.2.1.4 GO:0005975 ... G2QVH7 28193329
    2113 5gm9:A (1.36) BS03 BGC 3.2.1.4 GO:0005975 ... G2QVH7 28193329
    2114 5gm9:A (1.36) BS04 BGC 3.2.1.4 GO:0005975 ... G2QVH7 28193329
    2115 5gnx:A (1.8) BS01 BGC N/A GO:0004553 ... N/A 28189793
    2116 5gnx:B (1.8) BS01 BGC N/A GO:0004553 ... N/A 28189793
    2117 5gny:A (2.105) BS01 BGC N/A GO:0004553 ... N/A 28189793
    2118 5gny:B (2.105) BS01 BGC N/A GO:0004553 ... N/A 28189793
    2119 5gny:C (2.105) BS01 BGC N/A GO:0004553 ... N/A 28189793
    2120 5gny:D (2.105) BS01 BGC N/A GO:0004553 ... N/A 28189793
    2121 5gnz:A (2.2) BS01 BGC N/A GO:0004553 ... N/A 28189793
    2122 5gnz:B (2.2) BS01 BGC N/A GO:0004553 ... N/A 28189793
    2123 5gnz:C (2.2) BS01 BGC N/A GO:0004553 ... N/A 28189793
    2124 5gnz:D (2.2) BS01 BGC N/A GO:0004553 ... N/A 28189793
    2125 5gnz:H (2.2) BS01 BGC N/A GO:0004553 ... N/A 28189793
    2126 5gnz:I (2.2) BS01 BGC N/A GO:0004553 ... N/A 28189793
    2127 5gnz:J (2.2) BS01 BGC N/A GO:0004553 ... N/A 28189793
    2128 5gnz:K (2.2) BS01 BGC N/A GO:0004553 ... N/A 28189793
    2129 5gw7:A (2.2) BS04 BGC 3.2.1.- GO:0004555 ... P42592 27688023
    2130 5gw7:B (2.2) BS04 BGC 3.2.1.- GO:0004555 ... P42592 27688023
    2131 5gxy:A (1.7) BS01 BGC 3.2.1.- GO:0004553 ... Q9AJF8 30609216
    2132 5gxy:A (1.7) BS02 BGC 3.2.1.- GO:0004553 ... Q9AJF8 30609216
    2133 5gxy:B (1.7) BS01 BGC 3.2.1.- GO:0004553 ... Q9AJF8 30609216
    2134 5gxy:B (1.7) BS02 BGC 3.2.1.- GO:0004553 ... Q9AJF8 30609216
    2135 5gxz:A (2.05) BS01 BGC 3.2.1.- GO:0004553 ... Q9AJF8 30609216
    2136 5gxz:A (2.05) BS02 BGC 3.2.1.- GO:0004553 ... Q9AJF8 30609216
    2137 5gxz:A (2.05) BS03 BGC 3.2.1.- GO:0004553 ... Q9AJF8 30609216
    2138 5gxz:A (2.05) BS04 BGC 3.2.1.- GO:0004553 ... Q9AJF8 30609216
    2139 5gxz:A (2.05) BS05 BGC 3.2.1.- GO:0004553 ... Q9AJF8 30609216
    2140 5gxz:B (2.05) BS01 BGC 3.2.1.- GO:0004553 ... Q9AJF8 30609216
    2141 5gxz:B (2.05) BS02 BGC 3.2.1.- GO:0004553 ... Q9AJF8 30609216
    2142 5gxz:B (2.05) BS03 BGC 3.2.1.- GO:0004553 ... Q9AJF8 30609216
    2143 5gxz:B (2.05) BS04 BGC 3.2.1.- GO:0004553 ... Q9AJF8 30609216
    2144 5gxz:B (2.05) BS05 BGC 3.2.1.- GO:0004553 ... Q9AJF8 30609216
    2145 5gy0:A (1.74) BS01 BGC 3.2.1.- GO:0004553 ... Q9AJF8 30609216
    2146 5gy0:A (1.74) BS02 BGC 3.2.1.- GO:0004553 ... Q9AJF8 30609216
    2147 5gy0:A (1.74) BS03 BGC 3.2.1.- GO:0004553 ... Q9AJF8 30609216
    2148 5gy0:A (1.74) BS04 BGC 3.2.1.- GO:0004553 ... Q9AJF8 30609216
    2149 5gy0:B (1.74) BS01 BGC 3.2.1.- GO:0004553 ... Q9AJF8 30609216
    2150 5gy0:B (1.74) BS02 BGC 3.2.1.- GO:0004553 ... Q9AJF8 30609216
    2151 5gy0:B (1.74) BS03 BGC 3.2.1.- GO:0004553 ... Q9AJF8 30609216
    2152 5gy0:B (1.74) BS04 BGC 3.2.1.- GO:0004553 ... Q9AJF8 30609216
    2153 5gy1:A (1.99) BS01 BGC 3.2.1.- GO:0004553 ... Q9AJF8 30609216
    2154 5gy1:A (1.99) BS02 BGC 3.2.1.- GO:0004553 ... Q9AJF8 30609216
    2155 5gy1:A (1.99) BS03 BGC 3.2.1.- GO:0004553 ... Q9AJF8 30609216
    2156 5gy1:B (1.99) BS01 BGC 3.2.1.- GO:0004553 ... Q9AJF8 30609216
    2157 5gy1:B (1.99) BS02 BGC 3.2.1.- GO:0004553 ... Q9AJF8 30609216
    2158 5gy1:B (1.99) BS03 BGC 3.2.1.- GO:0004553 ... Q9AJF8 30609216
    2159 5gzd:A (1.19) BS01 BGC ? GO:0030246 ... O00214 27973456
    2160 5gze:A (1.32) BS01 BGC ? GO:0030246 ... O00214 27973456
    2161 5gzf:A (2.002) BS01 BGC ? GO:0030246 ... O00214 27973456
    2162 5gzg:A (1.997) BS01 BGC ? GO:0030246 ... O00214 27973456
    2163 5gzk:A (1.7) BS01 BGC N/A N/A N/A 28270506
    2164 5gzk:A (1.7) BS02 BGC N/A N/A N/A 28270506
    2165 5gzk:A (1.7) BS03 BGC N/A N/A N/A 28270506
    2166 5gzk:B (1.7) BS01 BGC N/A N/A N/A 28270506
    2167 5gzk:B (1.7) BS02 BGC N/A N/A N/A 28270506
    2168 5gzk:B (1.7) BS03 BGC N/A N/A N/A 28270506
    2169 5h40:A (2.2) BS01 BGC 2.4.1.333 GO:0005975 ... A9KJS6 28198470
    2170 5h40:A (2.2) BS02 BGC 2.4.1.333 GO:0005975 ... A9KJS6 28198470
    2171 5h40:B (2.2) BS01 BGC 2.4.1.333 GO:0005975 ... A9KJS6 28198470
    2172 5h40:B (2.2) BS02 BGC 2.4.1.333 GO:0005975 ... A9KJS6 28198470
    2173 5h41:A (2.0) BS02 BGC 2.4.1.333 GO:0005975 ... A9KJS6 28198470
    2174 5h41:B (2.0) BS02 BGC 2.4.1.333 GO:0005975 ... A9KJS6 28198470
    2175 5h4r:A (1.7031) BS01 BGC 3.2.1.4 GO:0000272 ... R9RX81 28838949
    2176 5h4r:A (1.7031) BS02 BGC 3.2.1.4 GO:0000272 ... R9RX81 28838949
    2177 5h4r:A (1.7031) BS03 BGC 3.2.1.4 GO:0000272 ... R9RX81 28838949
    2178 5h9y:A (1.969) BS01 BGC 3.2.1.39 GO:0030246 ... A0A1S4NYE2 28787048
    2179 5h9y:A (1.969) BS02 BGC 3.2.1.39 GO:0030246 ... A0A1S4NYE2 28787048
    2180 5h9y:A (1.969) BS03 BGC 3.2.1.39 GO:0030246 ... A0A1S4NYE2 28787048
    2181 5h9y:A (1.969) BS04 BGC 3.2.1.39 GO:0030246 ... A0A1S4NYE2 28787048
    2182 5h9y:A (1.969) BS05 BGC 3.2.1.39 GO:0030246 ... A0A1S4NYE2 28787048
    2183 5h9y:A (1.969) BS06 BGC 3.2.1.39 GO:0030246 ... A0A1S4NYE2 28787048
    2184 5hca:A (2.15) BS02 BGC ? GO:0005509 ... P83003 27840680
    2185 5hcf:B (2.451) BS01 BGC ? GO:0005509 ... Q4CPZ0 27840680
    2186 5hcf:F (2.451) BS01 BGC ? GO:0005509 ... Q4CPZ0 27840680
    2187 5hz7:A (1.43) BS04 BGC ? GO:0005515 ... P0AEX9 27161979
    2188 5i0f:B (1.85) BS03 BGC N/A GO:0003824 ... N/A 28089449
    2189 5i79:A (2.35) BS01 BGC 3.2.1.4 GO:0000272 ... O74706 27154222
    2190 5i79:A (2.35) BS02 BGC 3.2.1.4 GO:0000272 ... O74706 27154222
    2191 5i79:B (2.35) BS01 BGC 3.2.1.4 GO:0000272 ... O74706 27154222
    2192 5i79:B (2.35) BS02 BGC 3.2.1.4 GO:0000272 ... O74706 27154222
    2193 5i79:B (2.35) BS03 BGC 3.2.1.4 GO:0000272 ... O74706 27154222
    2194 5j14:A (1.915) BS01 BGC N/A GO:0000272 ... N/A 28179425
    2195 5j14:B (1.915) BS01 BGC N/A GO:0000272 ... N/A 28179425
    2196 5j6y:A (1.03) BS08 BGC ? N/A A1YIY3 28808685
    2197 5j7z:A (2.15) BS01 BGC N/A GO:0000272 ... N/A 28179425
    2198 5jop:D (1.75) BS01 BGC N/A N/A N/A 28287405
    2199 5jp0:A (2.3) BS01 BGC 3.2.1.21 GO:0000272 ... A7LXU3 27466444
    2200 5jp0:B (2.3) BS01 BGC 3.2.1.21 GO:0000272 ... A7LXU3 27466444

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218