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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 3964 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1au1:A (2.2) BS01 BGC ? GO:0002250 ... P01574 9342320
    2 1ax1:A (1.95) BS01 BGC ? GO:0030246 ... P16404 9545381
    3 1b1y:A (2.5) BS01 BGC 3.2.1.2 GO:0000272 ... P16098 9918723
    4 1b2y:A (3.2) BS01 BGC 3.2.1.1 GO:0003824 ... P04746 10657258
    5 1bag:A (2.5) BS01 BGC 3.2.1.1 GO:0003824 ... P00691 9514750
    6 1bg3:A (2.8) BS01 BGC 2.7.1.1 GO:0001666 ... P05708 9665168
    7 1bg3:A (2.8) BS03 BGC 2.7.1.1 GO:0001666 ... P05708 9665168
    8 1bg3:B (2.8) BS01 BGC 2.7.1.1 GO:0001666 ... P05708 9665168
    9 1bg3:B (2.8) BS03 BGC 2.7.1.1 GO:0001666 ... P05708 9665168
    10 1bg9:A (2.8) BS01 BGC 3.2.1.1 GO:0004556 ... P04063 9571044
    11 1byc:A (2.2) BS01 BGC 3.2.1.2 GO:0000272 ... P10538 8011643
    12 1byh:A (2.8) BS01 BGC 3.2.1.73 GO:0004553 ... P23904 8099449
    13 1byh:A (2.8) BS02 BGC 3.2.1.73 GO:0004553 ... P23904 8099449
    14 1c1l:A (1.5) BS01 BGC ? GO:0005615 ... P26788 10545323
    15 1cel:A (1.8) BS01 BGC 3.2.1.91 GO:0004553 ... P62694 8036495
    16 1cen:A (2.3) BS01 BGC 3.2.1.4 GO:0000272 ... P0C2S3 8632467
    17 1cen:A (2.3) BS02 BGC 3.2.1.4 GO:0000272 ... P0C2S3 8632467
    18 1cq1:A (1.9) BS01 BGC 1.1.5.2 GO:0008876 ... P13650 10508152
    19 1cq1:B (1.9) BS01 BGC 1.1.5.2 GO:0008876 ... P13650 10508152
    20 1dan:L (2.0) BS01 BGC 3.4.21.21 GO:0005509 ... P08709 8598903
    21 1dbn:A (2.75) BS01 BGC ? GO:0030246 ... P93248 10747930
    22 1dbn:B (2.75) BS01 BGC ? GO:0030246 ... P93248 10747930
    23 1ded:A (2.0) BS03 BGC 2.4.1.19 GO:0003824 ... P05618 10731709
    24 1dll:A (1.8) BS01 BGC 3.4.24.68 GO:0005576 ... P04958 10722735
    25 1dva:L (3.0) BS01 BGC 3.4.21.21 GO:0005509 ... P08709 10761907
    26 1e0v:A (1.7) BS02 BGC 3.2.1.8 GO:0004553 ... P26514 10930426
    27 1e4o:A (2.9) BS01 BGC 2.4.1.1 GO:0004645 ... P00490 10469642
    28 1e4o:B (2.9) BS01 BGC 2.4.1.1 GO:0004645 ... P00490 10469642
    29 1e55:A (2.0) BS01 BGC 3.2.1.182
    3.2.1.21
    GO:0004553 ... P49235 11106394 PDBbind: -logKd/Ki=4.12, Ki=76uM
    30 1e55:B (2.0) BS01 BGC 3.2.1.182
    3.2.1.21
    GO:0004553 ... P49235 11106394
    31 1e56:A (2.1) BS01 BGC 3.2.1.182
    3.2.1.21
    GO:0004553 ... P49235 11106394
    32 1e56:B (2.1) BS01 BGC 3.2.1.182
    3.2.1.21
    GO:0004553 ... P49235 11106394
    33 1ece:A (2.4) BS01 BGC 3.2.1.4 GO:0000272 ... P54583 8718854
    34 1ece:A (2.4) BS02 BGC 3.2.1.4 GO:0000272 ... P54583 8718854
    35 1ece:A (2.4) BS03 BGC 3.2.1.4 GO:0000272 ... P54583 8718854
    36 1ece:A (2.4) BS04 BGC 3.2.1.4 GO:0000272 ... P54583 8718854
    37 1ece:B (2.4) BS01 BGC 3.2.1.4 GO:0000272 ... P54583 8718854
    38 1ece:B (2.4) BS02 BGC 3.2.1.4 GO:0000272 ... P54583 8718854
    39 1ece:B (2.4) BS03 BGC 3.2.1.4 GO:0000272 ... P54583 8718854
    40 1ece:B (2.4) BS04 BGC 3.2.1.4 GO:0000272 ... P54583 8718854
    41 1eo5:A (2.0) BS01 BGC 2.4.1.19 GO:0003824 ... P43379 10869182
    42 1exp:A (1.8) BS02 BGC 3.2.1.8
    3.2.1.91
    GO:0004553 ... P07986 8564541
    43 1f9o:A (2.5) BS02 BGC 3.2.1.4 GO:0004553 ... P37698 10985769
    44 1f9o:A (2.5) BS03 BGC 3.2.1.4 GO:0004553 ... P37698 10985769
    45 1f9o:A (2.5) BS04 BGC 3.2.1.4 GO:0004553 ... P37698 10985769
    46 1f9o:A (2.5) BS05 BGC 3.2.1.4 GO:0004553 ... P37698 10985769
    47 1fce:A (2.0) BS03 BGC 3.2.1.4 GO:0004553 ... P37698 9755156
    48 1fce:A (2.0) BS05 BGC 3.2.1.4 GO:0004553 ... P37698 9755156
    49 1fce:A (2.0) BS06 BGC 3.2.1.4 GO:0004553 ... P37698 9755156
    50 1g0c:A (1.9) BS01 BGC 3.2.1.4 GO:0000272 ... P19424 11501997
    51 1g0c:A (1.9) BS02 BGC 3.2.1.4 GO:0000272 ... P19424 11501997
    52 1g9h:A (1.8) BS01 BGC 3.2.1.1 GO:0003824 ... P29957 11914073
    53 1g9j:A (1.9) BS02 BGC 3.2.1.4 GO:0004553 ... P37698 18035374
    54 1g9j:A (1.9) BS04 BGC 3.2.1.4 GO:0004553 ... P37698 18035374
    55 1g9j:A (1.9) BS06 BGC 3.2.1.4 GO:0004553 ... P37698 18035374
    56 1ga2:A (1.7) BS01 BGC 3.2.1.4 GO:0004553 ... P37700 12837787
    57 1ga2:A (1.7) BS02 BGC 3.2.1.4 GO:0004553 ... P37700 12837787
    58 1ga2:A (1.7) BS03 BGC 3.2.1.4 GO:0004553 ... P37700 12837787
    59 1ga2:A (1.7) BS04 BGC 3.2.1.4 GO:0004553 ... P37700 12837787
    60 1ga2:B (1.7) BS01 BGC 3.2.1.4 GO:0004553 ... P37700 12837787
    61 1ga2:B (1.7) BS02 BGC 3.2.1.4 GO:0004553 ... P37700 12837787
    62 1gu3:A (2.3) BS01 BGC 3.2.1.4 GO:0016798 ... P14090 12079353
    63 1gu3:A (2.3) BS02 BGC 3.2.1.4 GO:0016798 ... P14090 12079353
    64 1gu3:A (2.3) BS03 BGC 3.2.1.4 GO:0016798 ... P14090 12079353
    65 1gui:A (1.9) BS01 BGC ? GO:0016798 ... Q9WXN1 12079353
    66 1gui:A (1.9) BS02 BGC ? GO:0016798 ... Q9WXN1 12079353
    67 1gui:A (1.9) BS03 BGC ? GO:0016798 ... Q9WXN1 12079353
    68 1gwm:A (1.15) BS01 BGC ? N/A Q9C171 12391332
    69 1gwm:A (1.15) BS02 BGC ? N/A Q9C171 12391332
    70 1gwm:A (1.15) BS03 BGC ? N/A Q9C171 12391332
    71 1gwv:A (2.5) BS01 BGC 2.4.1.87 GO:0005975 ... P14769 12011052
    72 1gwv:B (2.5) BS01 BGC 2.4.1.87 GO:0005975 ... P14769 12011052
    73 1gz1:A (1.9) BS03 BGC 3.2.1.91 GO:0004553 ... Q9C1S9 12454501
    74 1gz1:A (1.9) BS04 BGC 3.2.1.91 GO:0004553 ... Q9C1S9 12454501
    75 1gz9:A (1.7) BS01 BGC ? GO:0030246 ... P83410 12139934
    76 1gzc:A (1.58) BS01 BGC ? GO:0030246 ... P83410 12139934
    77 1gzw:A (1.7) BS01 BGC ? GO:0002317 ... P09382 15476813
    78 1gzw:B (1.7) BS01 BGC ? GO:0002317 ... P09382 15476813
    79 1h11:A (1.08) BS02 BGC 3.2.1.4 GO:0000272 ... O85465 12595701
    80 1h11:A (1.08) BS03 BGC 3.2.1.4 GO:0000272 ... O85465 12595701
    81 1h49:A (1.9) BS01 BGC 3.2.1.182
    3.2.1.21
    GO:0004553 ... P49235 12684498
    82 1h49:B (1.9) BS03 BGC 3.2.1.182
    3.2.1.21
    GO:0004553 ... P49235 12684498
    83 1hf6:A (1.15) BS02 BGC 3.2.1.4 GO:0000272 ... O85465 12595701
    84 1hf6:A (1.15) BS03 BGC 3.2.1.4 GO:0000272 ... O85465 12595701
    85 1hgg:A (2.9) BS03 BGC ? GO:0019031 ... P03437 1327122
    86 1hgg:C (2.9) BS03 BGC ? GO:0019031 ... P03437 1327122
    87 1hgg:E (2.9) BS03 BGC ? GO:0019031 ... P03437 1327122
    88 1hkb:A (2.8) BS01 BGC 2.7.1.1 GO:0001678 ... P19367 9493266
    89 1hkb:A (2.8) BS03 BGC 2.7.1.1 GO:0001678 ... P19367 9493266
    90 1hkb:B (2.8) BS01 BGC 2.7.1.1 GO:0001678 ... P19367 9493266
    91 1hkb:B (2.8) BS03 BGC 2.7.1.1 GO:0001678 ... P19367 9493266
    92 1hkc:A (2.8) BS01 BGC 2.7.1.1 GO:0001678 ... P19367 9735292
    93 1hlc:A (2.9) BS01 BGC ? GO:0005515 ... P05162 8262940
    94 1hlc:B (2.9) BS01 BGC ? GO:0005515 ... P05162 8262940
    95 1hwp:B (3.1) BS01 BGC 3.2.2.22 N/A Q9AVR2 11288182
    96 1i82:A (1.9) BS01 BGC 3.2.1.8 GO:0004553 ... Q60037 11371186
    97 1i82:A (1.9) BS02 BGC 3.2.1.8 GO:0004553 ... Q60037 11371186
    98 1i8a:A (1.9) BS01 BGC 3.2.1.8 GO:0004553 ... Q60037 11371186
    99 1ia7:A (2.0) BS01 BGC 3.2.1.-
    3.2.1.4
    GO:0004553 ... Q9EYQ2 12220178
    100 1ia7:A (2.0) BS02 BGC 3.2.1.-
    3.2.1.4
    GO:0004553 ... Q9EYQ2 12220178
    101 1ieq:A (2.7) BS01 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 11709165
    102 1iex:A (2.2) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 11709165
    103 1igx:A (3.1) BS01 BGC 1.14.99.1 GO:0001516 ... P05979 11477109
    104 1igz:A (2.9) BS01 BGC 1.14.99.1 GO:0001516 ... P05979 11477109
    105 1is3:A (1.45) BS01 BGC ? GO:0005615 ... Q9YIC2 12206768
    106 1is4:A (1.9) BS01 BGC ? GO:0005615 ... Q9YIC2 12206768
    107 1isy:A (2.1) BS01 BGC 3.2.1.8 GO:0000272 ... Q7SI98 11829503
    108 1isy:A (2.1) BS02 BGC 3.2.1.8 GO:0000272 ... Q7SI98 11829503
    109 1isy:B (2.1) BS01 BGC 3.2.1.8 GO:0000272 ... Q7SI98 11829503
    110 1isy:B (2.1) BS02 BGC 3.2.1.8 GO:0000272 ... Q7SI98 11829503
    111 1j0y:A (2.1) BS01 BGC 3.2.1.2 GO:0000272 ... P36924 12761294
    112 1j0y:B (2.1) BS01 BGC 3.2.1.2 GO:0000272 ... P36924 12761294
    113 1j0y:C (2.1) BS01 BGC 3.2.1.2 GO:0000272 ... P36924 12761294
    114 1j0y:D (2.1) BS01 BGC 3.2.1.2 GO:0000272 ... P36924 12761294
    115 1j0z:A (2.2) BS01 BGC 3.2.1.2 GO:0000272 ... P36924 12761294
    116 1j0z:A (2.2) BS03 BGC 3.2.1.2 GO:0000272 ... P36924 12761294
    117 1j0z:B (2.2) BS01 BGC 3.2.1.2 GO:0000272 ... P36924 12761294
    118 1j0z:B (2.2) BS03 BGC 3.2.1.2 GO:0000272 ... P36924 12761294
    119 1j0z:C (2.2) BS03 BGC 3.2.1.2 GO:0000272 ... P36924 12761294
    120 1j0z:D (2.2) BS03 BGC 3.2.1.2 GO:0000272 ... P36924 12761294
    121 1j18:A (2.0) BS05 BGC 3.2.1.2 GO:0000272 ... P36924 12741813
    122 1j18:A (2.0) BS07 BGC 3.2.1.2 GO:0000272 ... P36924 12741813
    123 1j84:A (2.02) BS01 BGC 3.2.1.4 GO:0008810 ... P94622 11733998
    124 1j84:A (2.02) BS02 BGC 3.2.1.4 GO:0008810 ... P94622 11733998
    125 1j84:A (2.02) BS03 BGC 3.2.1.4 GO:0008810 ... P94622 11733998
    126 1j84:A (2.02) BS04 BGC 3.2.1.4 GO:0008810 ... P94622 11733998
    127 1js4:A (2.0) BS01 BGC 3.2.1.4 GO:0004553 ... P26221 9334746
    128 1js4:A (2.0) BS02 BGC 3.2.1.4 GO:0004553 ... P26221 9334746
    129 1js4:A (2.0) BS03 BGC 3.2.1.4 GO:0004553 ... P26221 9334746
    130 1js4:B (2.0) BS01 BGC 3.2.1.4 GO:0004553 ... P26221 9334746
    131 1js4:B (2.0) BS02 BGC 3.2.1.4 GO:0004553 ... P26221 9334746
    132 1js4:B (2.0) BS03 BGC 3.2.1.4 GO:0004553 ... P26221 9334746
    133 1jwy:A (2.3) BS01 BGC ? GO:0003774 ... P08799
    Q94464
    11689422
    134 1jx2:A (2.3) BS01 BGC ? GO:0003774 ... P08799
    Q94464
    11689422
    135 1jyn:A (1.8) BS01 BGC 3.2.1.23 GO:0000287 ... P00722 11732897
    136 1k72:A (1.8) BS01 BGC 3.2.1.4 GO:0004553 ... P37700 12837787
    137 1kcl:A (1.94) BS04 BGC 2.4.1.19 GO:0003824 ... P43379 11696539
    138 1kfg:A (1.9) BS03 BGC 3.2.1.4 GO:0004553 ... P37700 12837787
    139 1kfg:B (1.9) BS03 BGC 3.2.1.4 GO:0004553 ... P37700 12837787
    140 1kme:B (2.0) BS01 BGC ? GO:0005216 ... P02945 11829498
    141 1kwf:A (0.94) BS01 BGC 3.2.1.4 GO:0004553 ... A3DC29 11884144
    142 1kwf:A (0.94) BS02 BGC 3.2.1.4 GO:0004553 ... A3DC29 11884144
    143 1kwf:A (0.94) BS03 BGC 3.2.1.4 GO:0004553 ... A3DC29 11884144
    144 1kwf:A (0.94) BS04 BGC 3.2.1.4 GO:0004553 ... A3DC29 11884144
    145 1kwf:A (0.94) BS05 BGC 3.2.1.4 GO:0004553 ... A3DC29 11884144
    146 1kwf:A (0.94) BS06 BGC 3.2.1.4 GO:0004553 ... A3DC29 11884144
    147 1l1y:A (2.4) BS01 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    148 1l1y:A (2.4) BS02 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    149 1l1y:B (2.4) BS01 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    150 1l1y:B (2.4) BS02 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    151 1l1y:C (2.4) BS01 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    152 1l1y:C (2.4) BS02 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    153 1l1y:D (2.4) BS01 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    154 1l1y:D (2.4) BS02 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    155 1l1y:E (2.4) BS01 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    156 1l1y:E (2.4) BS02 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    157 1l1y:F (2.4) BS01 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    158 1l1y:F (2.4) BS02 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    159 1l2a:A (2.5) BS01 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    160 1l2a:A (2.5) BS02 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    161 1l2a:A (2.5) BS03 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    162 1l2a:A (2.5) BS04 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    163 1l2a:A (2.5) BS05 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    164 1l2a:A (2.5) BS06 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    165 1l2a:A (2.5) BS07 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    166 1l2a:A (2.5) BS08 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    167 1l2a:B (2.5) BS01 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    168 1l2a:B (2.5) BS02 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    169 1l2a:B (2.5) BS03 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    170 1l2a:B (2.5) BS04 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    171 1l2a:B (2.5) BS05 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    172 1l2a:B (2.5) BS06 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    173 1l2a:B (2.5) BS07 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    174 1l2a:C (2.5) BS01 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    175 1l2a:C (2.5) BS02 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    176 1l2a:C (2.5) BS03 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    177 1l2a:C (2.5) BS04 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    178 1l2a:C (2.5) BS05 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    179 1l2a:C (2.5) BS06 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    180 1l2a:C (2.5) BS07 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    181 1l2a:C (2.5) BS08 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    182 1l2a:D (2.5) BS01 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    183 1l2a:D (2.5) BS02 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    184 1l2a:D (2.5) BS03 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    185 1l2a:D (2.5) BS04 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    186 1l2a:D (2.5) BS05 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    187 1l2a:D (2.5) BS06 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    188 1l2a:D (2.5) BS07 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    189 1l2a:E (2.5) BS01 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    190 1l2a:E (2.5) BS02 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    191 1l2a:E (2.5) BS03 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    192 1l2a:E (2.5) BS04 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    193 1l2a:E (2.5) BS05 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    194 1l2a:E (2.5) BS06 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    195 1l2a:E (2.5) BS07 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    196 1l2a:E (2.5) BS08 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    197 1l2a:F (2.5) BS01 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    198 1l2a:F (2.5) BS02 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    199 1l2a:F (2.5) BS03 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911
    200 1l2a:F (2.5) BS04 BGC 3.2.1.176 GO:0004553 ... P0C2S5 12096911

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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