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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6160 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5601 8hjv:S (3.1) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5602 8hjv:S (3.1) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    5603 8hjv:S (3.1) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    5604 8hjv:T (3.1) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    5605 8hjv:T (3.1) BS02 BCL ? GO:0005886 ... Q83XD1 37737710
    5606 8hjv:U (3.1) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5607 8hjv:U (3.1) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    5608 8hjv:V (3.1) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    5609 8hjv:V (3.1) BS02 BCL ? GO:0005886 ... Q83XD1 37737710
    5610 8hjv:V (3.1) BS03 BCL ? GO:0005886 ... Q83XD1 37737710
    5611 8hjv:W (3.1) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5612 8hjv:W (3.1) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    5613 8hjv:W (3.1) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    5614 8iug:0 (2.86) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    5615 8iug:0 (2.86) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    5616 8iug:0 (2.86) BS04 BCL ? GO:0005886 ... A7NQE9 37468106
    5617 8iug:0 (2.86) BS05 BCL ? GO:0005886 ... A7NQE9 37468106
    5618 8iug:1 (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    5619 8iug:1 (2.86) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    5620 8iug:2 (2.86) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    5621 8iug:2 (2.86) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    5622 8iug:3 (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    5623 8iug:3 (2.86) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    5624 8iug:3 (2.86) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    5625 8iug:4 (2.86) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    5626 8iug:4 (2.86) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    5627 8iug:4 (2.86) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    5628 8iug:5 (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    5629 8iug:5 (2.86) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    5630 8iug:5 (2.86) BS04 BCL ? GO:0005886 ... Q83XD1 37468106
    5631 8iug:6 (2.86) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    5632 8iug:6 (2.86) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    5633 8iug:6 (2.86) BS04 BCL ? GO:0005886 ... A7NQE9 37468106
    5634 8iug:6 (2.86) BS05 BCL ? GO:0005886 ... A7NQE9 37468106
    5635 8iug:7 (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    5636 8iug:7 (2.86) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    5637 8iug:8 (2.86) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    5638 8iug:8 (2.86) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    5639 8iug:8 (2.86) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    5640 8iug:9 (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    5641 8iug:9 (2.86) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    5642 8iug:9 (2.86) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    5643 8iug:A (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    5644 8iug:A (2.86) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    5645 8iug:B (2.86) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    5646 8iug:B (2.86) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    5647 8iug:B (2.86) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    5648 8iug:C (2.86) BS01 BCL ? GO:0005506 ... Q83XC9 37468106
    5649 8iug:D (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    5650 8iug:D (2.86) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    5651 8iug:E (2.86) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    5652 8iug:E (2.86) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    5653 8iug:E (2.86) BS04 BCL ? GO:0005886 ... A7NQE9 37468106
    5654 8iug:F (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    5655 8iug:F (2.86) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    5656 8iug:G (2.86) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    5657 8iug:G (2.86) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    5658 8iug:H (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    5659 8iug:H (2.86) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    5660 8iug:I (2.86) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    5661 8iug:I (2.86) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    5662 8iug:I (2.86) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    5663 8iug:J (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    5664 8iug:J (2.86) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    5665 8iug:K (2.86) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    5666 8iug:K (2.86) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    5667 8iug:K (2.86) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    5668 8iug:K (2.86) BS04 BCL ? GO:0005886 ... A7NQE9 37468106
    5669 8iug:L (2.86) BS01 BCL ? GO:0009772 ... Q83XD0 37468106
    5670 8iug:L (2.86) BS02 BCL ? GO:0009772 ... Q83XD0 37468106
    5671 8iug:M (2.86) BS01 BCL ? GO:0009772 ... Q83XD0 37468106
    5672 8iug:M (2.86) BS04 BCL ? GO:0009772 ... Q83XD0 37468106
    5673 8iug:N (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    5674 8iug:N (2.86) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    5675 8iug:O (2.86) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    5676 8iug:O (2.86) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    5677 8iug:O (2.86) BS04 BCL ? GO:0005886 ... A7NQE9 37468106
    5678 8iug:P (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    5679 8iug:P (2.86) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    5680 8iug:Q (2.86) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    5681 8iug:Q (2.86) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    5682 8iug:Q (2.86) BS04 BCL ? GO:0005886 ... A7NQE9 37468106
    5683 8iug:R (2.86) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    5684 8iug:R (2.86) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    5685 8iug:S (2.86) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    5686 8iug:S (2.86) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    5687 8iug:S (2.86) BS04 BCL ? GO:0005886 ... A7NQE9 37468106
    5688 8iug:T (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    5689 8iug:T (2.86) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    5690 8iug:U (2.86) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    5691 8iug:U (2.86) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    5692 8iug:U (2.86) BS04 BCL ? GO:0005886 ... A7NQE9 37468106
    5693 8iug:U (2.86) BS05 BCL ? GO:0005886 ... A7NQE9 37468106
    5694 8iug:V (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    5695 8iug:V (2.86) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    5696 8iug:V (2.86) BS04 BCL ? GO:0005886 ... Q83XD1 37468106
    5697 8iug:W (2.86) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    5698 8iug:W (2.86) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    5699 8iug:W (2.86) BS04 BCL ? GO:0005886 ... A7NQE9 37468106
    5700 8iug:X (2.86) BS01 BCL N/A N/A N/A 37468106
    5701 8iun:0 (2.85) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    5702 8iun:0 (2.85) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    5703 8iun:0 (2.85) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    5704 8iun:0 (2.85) BS05 BCL ? GO:0005886 ... A7NQE9 37468106
    5705 8iun:1 (2.85) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    5706 8iun:1 (2.85) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    5707 8iun:1 (2.85) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    5708 8iun:2 (2.85) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    5709 8iun:2 (2.85) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    5710 8iun:3 (2.85) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    5711 8iun:3 (2.85) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    5712 8iun:4 (2.85) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    5713 8iun:4 (2.85) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    5714 8iun:5 (2.85) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    5715 8iun:5 (2.85) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    5716 8iun:6 (2.85) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    5717 8iun:6 (2.85) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    5718 8iun:6 (2.85) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    5719 8iun:6 (2.85) BS04 BCL ? GO:0005886 ... A7NQE9 37468106
    5720 8iun:7 (2.85) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    5721 8iun:7 (2.85) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    5722 8iun:7 (2.85) BS04 BCL ? GO:0005886 ... Q83XD1 37468106
    5723 8iun:8 (2.85) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    5724 8iun:8 (2.85) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    5725 8iun:8 (2.85) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    5726 8iun:9 (2.85) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    5727 8iun:9 (2.85) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    5728 8iun:A (2.85) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    5729 8iun:A (2.85) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    5730 8iun:A (2.85) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    5731 8iun:B (2.85) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    5732 8iun:B (2.85) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    5733 8iun:B (2.85) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    5734 8iun:D (2.85) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    5735 8iun:D (2.85) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    5736 8iun:D (2.85) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    5737 8iun:E (2.85) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    5738 8iun:E (2.85) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    5739 8iun:E (2.85) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    5740 8iun:F (2.85) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    5741 8iun:F (2.85) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    5742 8iun:F (2.85) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    5743 8iun:G (2.85) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    5744 8iun:G (2.85) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    5745 8iun:H (2.85) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    5746 8iun:H (2.85) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    5747 8iun:I (2.85) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    5748 8iun:I (2.85) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    5749 8iun:I (2.85) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    5750 8iun:J (2.85) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    5751 8iun:J (2.85) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    5752 8iun:J (2.85) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    5753 8iun:K (2.85) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    5754 8iun:K (2.85) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    5755 8iun:K (2.85) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    5756 8iun:L (2.85) BS05 BCL ? GO:0009772 ... A7NQE8 37468106
    5757 8iun:L (2.85) BS06 BCL ? GO:0009772 ... A7NQE8 37468106
    5758 8iun:M (2.85) BS01 BCL ? GO:0009772 ... A7NQE8 37468106
    5759 8iun:M (2.85) BS06 BCL ? GO:0009772 ... A7NQE8 37468106
    5760 8iun:N (2.85) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    5761 8iun:N (2.85) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    5762 8iun:O (2.85) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    5763 8iun:O (2.85) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    5764 8iun:O (2.85) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    5765 8iun:P (2.85) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    5766 8iun:P (2.85) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    5767 8iun:Q (2.85) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    5768 8iun:Q (2.85) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    5769 8iun:Q (2.85) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    5770 8iun:R (2.85) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    5771 8iun:R (2.85) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    5772 8iun:S (2.85) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    5773 8iun:S (2.85) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    5774 8iun:T (2.85) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    5775 8iun:T (2.85) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    5776 8iun:T (2.85) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    5777 8iun:U (2.85) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    5778 8iun:U (2.85) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    5779 8iun:U (2.85) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    5780 8iun:V (2.85) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    5781 8iun:V (2.85) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    5782 8iun:W (2.85) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    5783 8iun:W (2.85) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    5784 8iun:W (2.85) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    5785 8j5o:0 (2.9) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5786 8j5o:0 (2.9) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    5787 8j5o:0 (2.9) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    5788 8j5o:1 (2.9) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    5789 8j5o:1 (2.9) BS03 BCL ? GO:0005886 ... Q83XD1 37737710
    5790 8j5o:2 (2.9) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5791 8j5o:2 (2.9) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    5792 8j5o:2 (2.9) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    5793 8j5o:3 (2.9) BS02 BCL ? GO:0005886 ... Q83XD1 37737710
    5794 8j5o:3 (2.9) BS03 BCL ? GO:0005886 ... Q83XD1 37737710
    5795 8j5o:3 (2.9) BS04 BCL ? GO:0005886 ... Q83XD1 37737710
    5796 8j5o:4 (2.9) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5797 8j5o:4 (2.9) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    5798 8j5o:4 (2.9) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    5799 8j5o:4 (2.9) BS04 BCL ? GO:0005886 ... A7NQE9 37737710
    5800 8j5o:5 (2.9) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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