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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6160 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5401 8gwa:6 (2.9) BS08 BCL ? GO:0015979 ... Q46393 36125941
    5402 8gwa:6 (2.9) BS09 BCL ? GO:0015979 ... Q46393 36125941
    5403 8gwa:6 (2.9) BS10 BCL ? GO:0015979 ... Q46393 36125941
    5404 8gwa:A (2.9) BS03 BCL ? GO:0009579 ... Q8KAY0 36125941
    5405 8gwa:A (2.9) BS04 BCL ? GO:0009579 ... Q8KAY0 36125941
    5406 8gwa:A (2.9) BS05 BCL ? GO:0009579 ... Q8KAY0 36125941
    5407 8gwa:A (2.9) BS06 BCL ? GO:0009579 ... Q8KAY0 36125941
    5408 8gwa:A (2.9) BS07 BCL ? GO:0009579 ... Q8KAY0 36125941
    5409 8gwa:A (2.9) BS08 BCL ? GO:0009579 ... Q8KAY0 36125941
    5410 8gwa:A (2.9) BS09 BCL ? GO:0009579 ... Q8KAY0 36125941
    5411 8gwa:A (2.9) BS10 BCL ? GO:0009579 ... Q8KAY0 36125941
    5412 8gwa:A (2.9) BS11 BCL ? GO:0009579 ... Q8KAY0 36125941
    5413 8gwa:A (2.9) BS12 BCL ? GO:0009579 ... Q8KAY0 36125941
    5414 8gwa:A (2.9) BS13 BCL ? GO:0009579 ... Q8KAY0 36125941
    5415 8gwa:A (2.9) BS21 BCL ? GO:0009579 ... Q8KAY0 36125941
    5416 8gwa:A (2.9) BS23 BCL ? GO:0009579 ... Q8KAY0 36125941
    5417 8gwa:B (2.9) BS03 BCL ? GO:0046872 ... Q8KAY1 36125941
    5418 8gwa:C (2.9) BS01 BCL ? GO:0005886 ... O07091 36125941
    5419 8gwa:F (2.9) BS01 BCL ? GO:0016020 ... Q8KG87 36125941
    5420 8gwa:a (2.9) BS08 BCL ? GO:0009579 ... Q8KAY0 36125941
    5421 8gwa:a (2.9) BS09 BCL ? GO:0009579 ... Q8KAY0 36125941
    5422 8gwa:a (2.9) BS10 BCL ? GO:0009579 ... Q8KAY0 36125941
    5423 8gwa:a (2.9) BS11 BCL ? GO:0009579 ... Q8KAY0 36125941
    5424 8gwa:a (2.9) BS12 BCL ? GO:0009579 ... Q8KAY0 36125941
    5425 8gwa:a (2.9) BS13 BCL ? GO:0009579 ... Q8KAY0 36125941
    5426 8gwa:a (2.9) BS14 BCL ? GO:0009579 ... Q8KAY0 36125941
    5427 8gwa:a (2.9) BS15 BCL ? GO:0009579 ... Q8KAY0 36125941
    5428 8gwa:a (2.9) BS16 BCL ? GO:0009579 ... Q8KAY0 36125941
    5429 8gwa:a (2.9) BS17 BCL ? GO:0009579 ... Q8KAY0 36125941
    5430 8gwa:a (2.9) BS18 BCL ? GO:0009579 ... Q8KAY0 36125941
    5431 8gwa:a (2.9) BS22 BCL ? GO:0009579 ... Q8KAY0 36125941
    5432 8hju:0 (2.8) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5433 8hju:0 (2.8) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    5434 8hju:0 (2.8) BS05 BCL ? GO:0005886 ... A7NQE9 37737710
    5435 8hju:1 (2.8) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    5436 8hju:1 (2.8) BS03 BCL ? GO:0005886 ... Q83XD1 37737710
    5437 8hju:2 (2.8) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5438 8hju:2 (2.8) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    5439 8hju:2 (2.8) BS04 BCL ? GO:0005886 ... A7NQE9 37737710
    5440 8hju:2 (2.8) BS06 BCL ? GO:0005886 ... A7NQE9 37737710
    5441 8hju:3 (2.8) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    5442 8hju:3 (2.8) BS03 BCL ? GO:0005886 ... Q83XD1 37737710
    5443 8hju:4 (2.8) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5444 8hju:4 (2.8) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    5445 8hju:4 (2.8) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    5446 8hju:4 (2.8) BS05 BCL ? GO:0005886 ... A7NQE9 37737710
    5447 8hju:5 (2.8) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    5448 8hju:5 (2.8) BS02 BCL ? GO:0005886 ... Q83XD1 37737710
    5449 8hju:5 (2.8) BS04 BCL ? GO:0005886 ... Q83XD1 37737710
    5450 8hju:5 (2.8) BS05 BCL ? GO:0005886 ... Q83XD1 37737710
    5451 8hju:6 (2.8) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5452 8hju:6 (2.8) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    5453 8hju:6 (2.8) BS04 BCL ? GO:0005886 ... A7NQE9 37737710
    5454 8hju:7 (2.8) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    5455 8hju:7 (2.8) BS02 BCL ? GO:0005886 ... Q83XD1 37737710
    5456 8hju:7 (2.8) BS03 BCL ? GO:0005886 ... Q83XD1 37737710
    5457 8hju:8 (2.8) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5458 8hju:8 (2.8) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    5459 8hju:8 (2.8) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    5460 8hju:9 (2.8) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    5461 8hju:9 (2.8) BS02 BCL ? GO:0005886 ... Q83XD1 37737710
    5462 8hju:9 (2.8) BS04 BCL ? GO:0005886 ... Q83XD1 37737710
    5463 8hju:9 (2.8) BS05 BCL ? GO:0005886 ... Q83XD1 37737710
    5464 8hju:A (2.8) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    5465 8hju:A (2.8) BS02 BCL ? GO:0005886 ... Q83XD1 37737710
    5466 8hju:A (2.8) BS03 BCL ? GO:0005886 ... Q83XD1 37737710
    5467 8hju:A (2.8) BS06 BCL ? GO:0005886 ... Q83XD1 37737710
    5468 8hju:B (2.8) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5469 8hju:B (2.8) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    5470 8hju:B (2.8) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    5471 8hju:B (2.8) BS05 BCL ? GO:0005886 ... A7NQE9 37737710
    5472 8hju:C (2.8) BS02 BCL ? GO:0005506 ... A7NQE7 37737710
    5473 8hju:D (2.8) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    5474 8hju:D (2.8) BS03 BCL ? GO:0005886 ... Q83XD1 37737710
    5475 8hju:D (2.8) BS04 BCL ? GO:0005886 ... Q83XD1 37737710
    5476 8hju:D (2.8) BS05 BCL ? GO:0005886 ... Q83XD1 37737710
    5477 8hju:E (2.8) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    5478 8hju:E (2.8) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    5479 8hju:E (2.8) BS04 BCL ? GO:0005886 ... A7NQE9 37737710
    5480 8hju:E (2.8) BS06 BCL ? GO:0005886 ... A7NQE9 37737710
    5481 8hju:F (2.8) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    5482 8hju:F (2.8) BS02 BCL ? GO:0005886 ... Q83XD1 37737710
    5483 8hju:F (2.8) BS03 BCL ? GO:0005886 ... Q83XD1 37737710
    5484 8hju:F (2.8) BS05 BCL ? GO:0005886 ... Q83XD1 37737710
    5485 8hju:G (2.8) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5486 8hju:G (2.8) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    5487 8hju:G (2.8) BS04 BCL ? GO:0005886 ... A7NQE9 37737710
    5488 8hju:G (2.8) BS06 BCL ? GO:0005886 ... A7NQE9 37737710
    5489 8hju:H (2.8) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    5490 8hju:H (2.8) BS02 BCL ? GO:0005886 ... Q83XD1 37737710
    5491 8hju:H (2.8) BS03 BCL ? GO:0005886 ... Q83XD1 37737710
    5492 8hju:H (2.8) BS05 BCL ? GO:0005886 ... Q83XD1 37737710
    5493 8hju:I (2.8) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5494 8hju:I (2.8) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    5495 8hju:I (2.8) BS04 BCL ? GO:0005886 ... A7NQE9 37737710
    5496 8hju:I (2.8) BS06 BCL ? GO:0005886 ... A7NQE9 37737710
    5497 8hju:J (2.8) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    5498 8hju:J (2.8) BS02 BCL ? GO:0005886 ... Q83XD1 37737710
    5499 8hju:J (2.8) BS03 BCL ? GO:0005886 ... Q83XD1 37737710
    5500 8hju:K (2.8) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5501 8hju:K (2.8) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    5502 8hju:K (2.8) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    5503 8hju:L (2.8) BS01 BCL ? GO:0009772 ... A7NQE8 37737710
    5504 8hju:L (2.8) BS02 BCL ? GO:0009772 ... A7NQE8 37737710
    5505 8hju:M (2.8) BS01 BCL ? GO:0009772 ... A7NQE8 37737710
    5506 8hju:M (2.8) BS06 BCL ? GO:0009772 ... A7NQE8 37737710
    5507 8hju:N (2.8) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    5508 8hju:N (2.8) BS02 BCL ? GO:0005886 ... Q83XD1 37737710
    5509 8hju:N (2.8) BS03 BCL ? GO:0005886 ... Q83XD1 37737710
    5510 8hju:O (2.8) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5511 8hju:O (2.8) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    5512 8hju:O (2.8) BS04 BCL ? GO:0005886 ... A7NQE9 37737710
    5513 8hju:O (2.8) BS06 BCL ? GO:0005886 ... A7NQE9 37737710
    5514 8hju:P (2.8) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    5515 8hju:P (2.8) BS02 BCL ? GO:0005886 ... Q83XD1 37737710
    5516 8hju:P (2.8) BS04 BCL ? GO:0005886 ... Q83XD1 37737710
    5517 8hju:Q (2.8) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5518 8hju:Q (2.8) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    5519 8hju:Q (2.8) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    5520 8hju:Q (2.8) BS05 BCL ? GO:0005886 ... A7NQE9 37737710
    5521 8hju:R (2.8) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    5522 8hju:R (2.8) BS03 BCL ? GO:0005886 ... Q83XD1 37737710
    5523 8hju:R (2.8) BS04 BCL ? GO:0005886 ... Q83XD1 37737710
    5524 8hju:S (2.8) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5525 8hju:S (2.8) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    5526 8hju:S (2.8) BS04 BCL ? GO:0005886 ... A7NQE9 37737710
    5527 8hju:T (2.8) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    5528 8hju:T (2.8) BS03 BCL ? GO:0005886 ... Q83XD1 37737710
    5529 8hju:T (2.8) BS05 BCL ? GO:0005886 ... Q83XD1 37737710
    5530 8hju:T (2.8) BS06 BCL ? GO:0005886 ... Q83XD1 37737710
    5531 8hju:U (2.8) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5532 8hju:U (2.8) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    5533 8hju:U (2.8) BS04 BCL ? GO:0005886 ... A7NQE9 37737710
    5534 8hju:U (2.8) BS06 BCL ? GO:0005886 ... A7NQE9 37737710
    5535 8hju:V (2.8) BS02 BCL ? GO:0005886 ... Q83XD1 37737710
    5536 8hju:V (2.8) BS03 BCL ? GO:0005886 ... Q83XD1 37737710
    5537 8hju:W (2.8) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    5538 8hju:W (2.8) BS04 BCL ? GO:0005886 ... A7NQE9 37737710
    5539 8hju:W (2.8) BS05 BCL ? GO:0005886 ... A7NQE9 37737710
    5540 8hjv:0 (3.1) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5541 8hjv:0 (3.1) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    5542 8hjv:1 (3.1) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    5543 8hjv:2 (3.1) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5544 8hjv:2 (3.1) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    5545 8hjv:2 (3.1) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    5546 8hjv:3 (3.1) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    5547 8hjv:3 (3.1) BS02 BCL ? GO:0005886 ... Q83XD1 37737710
    5548 8hjv:4 (3.1) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5549 8hjv:4 (3.1) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    5550 8hjv:5 (3.1) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    5551 8hjv:5 (3.1) BS02 BCL ? GO:0005886 ... Q83XD1 37737710
    5552 8hjv:6 (3.1) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5553 8hjv:6 (3.1) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    5554 8hjv:7 (3.1) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    5555 8hjv:7 (3.1) BS02 BCL ? GO:0005886 ... Q83XD1 37737710
    5556 8hjv:8 (3.1) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5557 8hjv:8 (3.1) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    5558 8hjv:9 (3.1) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    5559 8hjv:9 (3.1) BS03 BCL ? GO:0005886 ... Q83XD1 37737710
    5560 8hjv:A (3.1) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    5561 8hjv:A (3.1) BS02 BCL ? GO:0005886 ... Q83XD1 37737710
    5562 8hjv:B (3.1) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5563 8hjv:B (3.1) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    5564 8hjv:B (3.1) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    5565 8hjv:D (3.1) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    5566 8hjv:D (3.1) BS03 BCL ? GO:0005886 ... Q83XD1 37737710
    5567 8hjv:D (3.1) BS04 BCL ? GO:0005886 ... Q83XD1 37737710
    5568 8hjv:E (3.1) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5569 8hjv:E (3.1) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    5570 8hjv:F (3.1) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    5571 8hjv:F (3.1) BS02 BCL ? GO:0005886 ... Q83XD1 37737710
    5572 8hjv:G (3.1) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5573 8hjv:G (3.1) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    5574 8hjv:G (3.1) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    5575 8hjv:H (3.1) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    5576 8hjv:H (3.1) BS02 BCL ? GO:0005886 ... Q83XD1 37737710
    5577 8hjv:I (3.1) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5578 8hjv:I (3.1) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    5579 8hjv:I (3.1) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    5580 8hjv:J (3.1) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    5581 8hjv:J (3.1) BS03 BCL ? GO:0005886 ... Q83XD1 37737710
    5582 8hjv:K (3.1) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5583 8hjv:K (3.1) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    5584 8hjv:K (3.1) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    5585 8hjv:L (3.1) BS01 BCL ? GO:0009772 ... A7NQE8 37737710
    5586 8hjv:L (3.1) BS06 BCL ? GO:0009772 ... A7NQE8 37737710
    5587 8hjv:M (3.1) BS04 BCL ? GO:0009772 ... A7NQE8 37737710
    5588 8hjv:M (3.1) BS08 BCL ? GO:0009772 ... A7NQE8 37737710
    5589 8hjv:N (3.1) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    5590 8hjv:N (3.1) BS03 BCL ? GO:0005886 ... Q83XD1 37737710
    5591 8hjv:O (3.1) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5592 8hjv:O (3.1) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    5593 8hjv:O (3.1) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    5594 8hjv:P (3.1) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    5595 8hjv:P (3.1) BS02 BCL ? GO:0005886 ... Q83XD1 37737710
    5596 8hjv:Q (3.1) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    5597 8hjv:Q (3.1) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    5598 8hjv:Q (3.1) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    5599 8hjv:R (3.1) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    5600 8hjv:R (3.1) BS02 BCL ? GO:0005886 ... Q83XD1 37737710
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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