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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6160 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5201 7ze8:J (3.6) BS03 BCL ? GO:0005886 ... P35107 36251992
    5202 7ze8:J (3.6) BS04 BCL ? GO:0005886 ... P35107 36251992
    5203 7ze8:K (3.6) BS03 BCL ? GO:0005886 ... P35105 36251992
    5204 7ze8:K (3.6) BS04 BCL ? GO:0005886 ... P35105 36251992
    5205 7ze8:K (3.6) BS06 BCL ? GO:0005886 ... P35105 36251992
    5206 7ze8:L (3.6) BS02 BCL ? GO:0005886 ... P35107 36251992
    5207 7ze8:L (3.6) BS03 BCL ? GO:0005886 ... P35107 36251992
    5208 7ze8:L (3.6) BS04 BCL ? GO:0005886 ... P35107 36251992
    5209 7ze8:M (3.6) BS02 BCL ? GO:0005886 ... P35105 36251992
    5210 7ze8:M (3.6) BS03 BCL ? GO:0005886 ... P35105 36251992
    5211 7ze8:M (3.6) BS04 BCL ? GO:0005886 ... P35105 36251992
    5212 7ze8:M (3.6) BS05 BCL ? GO:0005886 ... P35105 36251992
    5213 7ze8:N (3.6) BS02 BCL ? GO:0005886 ... P35107 36251992
    5214 7ze8:N (3.6) BS03 BCL ? GO:0005886 ... P35107 36251992
    5215 7ze8:N (3.6) BS04 BCL ? GO:0005886 ... P35107 36251992
    5216 7ze8:O (3.6) BS03 BCL ? GO:0005886 ... P35105 36251992
    5217 7ze8:O (3.6) BS04 BCL ? GO:0005886 ... P35105 36251992
    5218 7ze8:O (3.6) BS05 BCL ? GO:0005886 ... P35105 36251992
    5219 7ze8:O (3.6) BS07 BCL ? GO:0005886 ... P35105 36251992
    5220 7ze8:O (3.6) BS08 BCL ? GO:0005886 ... P35105 36251992
    5221 7ze8:P (3.6) BS01 BCL ? GO:0005886 ... P35107 36251992
    5222 7ze8:P (3.6) BS02 BCL ? GO:0005886 ... P35107 36251992
    5223 7ze8:P (3.6) BS04 BCL ? GO:0005886 ... P35107 36251992
    5224 7ze8:Q (3.6) BS01 BCL ? GO:0005886 ... P35105 36251992
    5225 7ze8:Q (3.6) BS05 BCL ? GO:0005886 ... P35105 36251992
    5226 7ze8:Q (3.6) BS06 BCL ? GO:0005886 ... P35105 36251992
    5227 7ze8:Q (3.6) BS07 BCL ? GO:0005886 ... P35105 36251992
    5228 7ze8:R (3.6) BS02 BCL ? GO:0005886 ... P35107 36251992
    5229 7ze8:R (3.6) BS03 BCL ? GO:0005886 ... P35107 36251992
    5230 7ze8:S (3.6) BS01 BCL ? N/A Q6N9P5 36251992
    5231 7ze8:S (3.6) BS02 BCL ? N/A Q6N9P5 36251992
    5232 7ze8:S (3.6) BS03 BCL ? N/A Q6N9P5 36251992
    5233 7ze8:S (3.6) BS04 BCL ? N/A Q6N9P5 36251992
    5234 7ze8:S (3.6) BS05 BCL ? N/A Q6N9P5 36251992
    5235 7ze8:S (3.6) BS06 BCL ? N/A Q6N9P5 36251992
    5236 8b64:A (2.589) BS01 BCL ? GO:0005886 ... P02950 36738736
    5237 8b64:A (2.589) BS03 BCL ? GO:0005886 ... P02950 36738736
    5238 8b64:B (2.589) BS01 BCL ? GO:0005886 ... P02950 36738736
    5239 8b64:B (2.589) BS02 BCL ? GO:0005886 ... P02950 36738736
    5240 8b64:D (2.589) BS01 BCL ? GO:0005886 ... P02950 36738736
    5241 8b64:D (2.589) BS02 BCL ? GO:0005886 ... P02950 36738736
    5242 8b64:D (2.589) BS04 BCL ? GO:0005886 ... P02950 36738736
    5243 8b64:E (2.589) BS01 BCL ? GO:0005886 ... P02950 36738736
    5244 8b64:E (2.589) BS02 BCL ? GO:0005886 ... P02950 36738736
    5245 8b64:F (2.589) BS02 BCL ? GO:0005886 ... P02950 36738736
    5246 8b64:F (2.589) BS03 BCL ? GO:0005886 ... P02950 36738736
    5247 8b64:G (2.589) BS01 BCL ? GO:0005886 ... P02950 36738736
    5248 8b64:G (2.589) BS02 BCL ? GO:0005886 ... P02950 36738736
    5249 8b64:I (2.589) BS01 BCL ? GO:0005886 ... P02950 36738736
    5250 8b64:I (2.589) BS02 BCL ? GO:0005886 ... P02950 36738736
    5251 8b64:I (2.589) BS04 BCL ? GO:0005886 ... P02950 36738736
    5252 8b64:J (2.589) BS01 BCL ? GO:0005886 ... P02950 36738736
    5253 8b64:J (2.589) BS04 BCL ? GO:0005886 ... P02950 36738736
    5254 8b64:K (2.589) BS01 BCL ? GO:0005886 ... P02950 36738736
    5255 8b64:K (2.589) BS03 BCL ? GO:0005886 ... P02950 36738736
    5256 8b64:L (2.589) BS01 BCL ? GO:0009772 ... P19057 36738736
    5257 8b64:L (2.589) BS05 BCL ? GO:0009772 ... P19057 36738736
    5258 8b64:L (2.589) BS08 BCL ? GO:0009772 ... P19057 36738736
    5259 8b64:M (2.589) BS03 BCL ? GO:0009772 ... P11847 36738736
    5260 8b64:M (2.589) BS07 BCL ? GO:0009772 ... P11847 36738736
    5261 8b64:M (2.589) BS08 BCL ? GO:0009772 ... P11847 36738736
    5262 8b64:N (2.589) BS01 BCL ? GO:0005886 ... P02950 36738736
    5263 8b64:N (2.589) BS02 BCL ? GO:0005886 ... P02950 36738736
    5264 8b64:O (2.589) BS01 BCL ? GO:0005886 ... P02950 36738736
    5265 8b64:O (2.589) BS03 BCL ? GO:0005886 ... P02950 36738736
    5266 8b64:R (2.589) BS01 BCL ? GO:0005886 ... P02950 36738736
    5267 8b64:R (2.589) BS03 BCL ? GO:0005886 ... P02950 36738736
    5268 8b64:S (2.589) BS03 BCL ? GO:0005886 ... P02950 36738736
    5269 8b64:S (2.589) BS04 BCL ? GO:0005886 ... P02950 36738736
    5270 8b64:T (2.589) BS01 BCL ? GO:0005886 ... P02950 36738736
    5271 8b64:T (2.589) BS03 BCL ? GO:0005886 ... P02950 36738736
    5272 8b64:a (2.589) BS01 BCL ? GO:0005886 ... P02948 36738736
    5273 8b64:a (2.589) BS02 BCL ? GO:0005886 ... P02948 36738736
    5274 8b64:a (2.589) BS04 BCL ? GO:0005886 ... P02948 36738736
    5275 8b64:b (2.589) BS01 BCL ? GO:0005886 ... P02948 36738736
    5276 8b64:b (2.589) BS02 BCL ? GO:0005886 ... P02948 36738736
    5277 8b64:d (2.589) BS01 BCL ? GO:0005886 ... P02948 36738736
    5278 8b64:d (2.589) BS03 BCL ? GO:0005886 ... P02948 36738736
    5279 8b64:e (2.589) BS01 BCL ? GO:0005886 ... P02948 36738736
    5280 8b64:e (2.589) BS02 BCL ? GO:0005886 ... P02948 36738736
    5281 8b64:f (2.589) BS02 BCL ? GO:0005886 ... P02948 36738736
    5282 8b64:f (2.589) BS04 BCL ? GO:0005886 ... P02948 36738736
    5283 8b64:g (2.589) BS02 BCL ? GO:0005886 ... P02948 36738736
    5284 8b64:g (2.589) BS03 BCL ? GO:0005886 ... P02948 36738736
    5285 8b64:i (2.589) BS01 BCL ? GO:0005886 ... P02948 36738736
    5286 8b64:i (2.589) BS02 BCL ? GO:0005886 ... P02948 36738736
    5287 8b64:j (2.589) BS01 BCL ? GO:0005886 ... P02948 36738736
    5288 8b64:j (2.589) BS03 BCL ? GO:0005886 ... P02948 36738736
    5289 8b64:k (2.589) BS01 BCL ? GO:0005886 ... P02948 36738736
    5290 8b64:k (2.589) BS03 BCL ? GO:0005886 ... P02948 36738736
    5291 8b64:n (2.589) BS02 BCL ? GO:0005886 ... P02948 36738736
    5292 8b64:n (2.589) BS03 BCL ? GO:0005886 ... P02948 36738736
    5293 8b64:o (2.589) BS01 BCL ? GO:0005886 ... P02948 36738736
    5294 8b64:o (2.589) BS02 BCL ? GO:0005886 ... P02948 36738736
    5295 8b64:r (2.589) BS01 BCL ? GO:0005886 ... P02948 36738736
    5296 8b64:r (2.589) BS03 BCL ? GO:0005886 ... P02948 36738736
    5297 8b64:s (2.589) BS02 BCL ? GO:0005886 ... P02948 36738736
    5298 8b64:s (2.589) BS03 BCL ? GO:0005886 ... P02948 36738736
    5299 8b64:t (2.589) BS01 BCL ? GO:0005886 ... P02948 36738736
    5300 8b64:t (2.589) BS04 BCL ? GO:0005886 ... P02948 36738736
    5301 8b64:u (2.589) BS02 BCL ? GO:0005886 ... P02948 36738736
    5302 8b64:u (2.589) BS03 BCL ? GO:0005886 ... P02948 36738736
    5303 8c3f:L (2.6) BS01 BCL ? GO:0009772 ... Q3J1A5 36837660
    5304 8c3f:L (2.6) BS04 BCL ? GO:0009772 ... Q3J1A5 36837660
    5305 8c3f:L (2.6) BS05 BCL ? GO:0009772 ... Q3J1A5 36837660
    5306 8c3f:M (2.6) BS02 BCL ? GO:0009772 ... Q3J1A6 36837660
    5307 8c3f:M (2.6) BS03 BCL ? GO:0009772 ... Q3J1A6 36837660
    5308 8c3f:M (2.6) BS04 BCL ? GO:0009772 ... Q3J1A6 36837660
    5309 8c5x:L (2.6) BS01 BCL ? GO:0009772 ... Q3J1A5 36837657
    5310 8c5x:L (2.6) BS02 BCL ? GO:0009772 ... Q3J1A5 36837657
    5311 8c5x:L (2.6) BS05 BCL ? GO:0009772 ... Q3J1A5 36837657
    5312 8c5x:M (2.6) BS01 BCL ? GO:0009772 ... Q3J1A6 36837657
    5313 8c5x:M (2.6) BS03 BCL ? GO:0009772 ... Q3J1A6 36837657
    5314 8c5x:M (2.6) BS04 BCL ? GO:0009772 ... Q3J1A6 36837657
    5315 8c6k:L (2.86) BS01 BCL ? GO:0009772 ... Q3J1A5 36837657
    5316 8c6k:L (2.86) BS02 BCL ? GO:0009772 ... Q3J1A5 36837657
    5317 8c6k:L (2.86) BS05 BCL ? GO:0009772 ... Q3J1A5 36837657
    5318 8c6k:M (2.86) BS01 BCL ? GO:0009772 ... Q3J1A6 36837657
    5319 8c6k:M (2.86) BS03 BCL ? GO:0009772 ... Q3J1A6 36837657
    5320 8c6k:M (2.86) BS04 BCL ? GO:0009772 ... Q3J1A6 36837657
    5321 8c7c:L (2.6) BS01 BCL ? GO:0009772 ... Q3J1A5 36837657
    5322 8c7c:L (2.6) BS02 BCL ? GO:0009772 ... Q3J1A5 36837657
    5323 8c7c:L (2.6) BS04 BCL ? GO:0009772 ... Q3J1A5 36837657
    5324 8c7c:M (2.6) BS01 BCL ? GO:0009772 ... Q3J1A6 36837657
    5325 8c7c:M (2.6) BS03 BCL ? GO:0009772 ... Q3J1A6 36837657
    5326 8c7c:M (2.6) BS04 BCL ? GO:0009772 ... Q3J1A6 36837657
    5327 8c87:L (2.45) BS01 BCL ? GO:0009772 ... Q3J1A5 36837657
    5328 8c87:L (2.45) BS02 BCL ? GO:0009772 ... Q3J1A5 36837657
    5329 8c87:L (2.45) BS03 BCL ? GO:0009772 ... Q3J1A5 36837657
    5330 8c87:M (2.45) BS01 BCL ? GO:0009772 ... Q3J1A6 36837657
    5331 8c87:M (2.45) BS02 BCL ? GO:0009772 ... Q3J1A6 36837657
    5332 8c87:M (2.45) BS03 BCL ? GO:0009772 ... Q3J1A6 36837657
    5333 8c87:M (2.45) BS05 BCL ? GO:0009772 ... Q3J1A6 36837657
    5334 8c88:L (2.75) BS01 BCL ? GO:0009772 ... Q3J1A5 36837657
    5335 8c88:L (2.75) BS02 BCL ? GO:0009772 ... Q3J1A5 36837657
    5336 8c88:L (2.75) BS04 BCL ? GO:0009772 ... Q3J1A5 36837657
    5337 8c88:M (2.75) BS01 BCL ? GO:0009772 ... Q3J1A6 36837657
    5338 8c88:M (2.75) BS04 BCL ? GO:0009772 ... Q3J1A6 36837657
    5339 8c88:M (2.75) BS05 BCL ? GO:0009772 ... Q3J1A6 36837657
    5340 8gwa:1 (2.9) BS01 BCL ? GO:0015979 ... Q46393 36125941
    5341 8gwa:1 (2.9) BS02 BCL ? GO:0015979 ... Q46393 36125941
    5342 8gwa:1 (2.9) BS03 BCL ? GO:0015979 ... Q46393 36125941
    5343 8gwa:1 (2.9) BS04 BCL ? GO:0015979 ... Q46393 36125941
    5344 8gwa:1 (2.9) BS05 BCL ? GO:0015979 ... Q46393 36125941
    5345 8gwa:1 (2.9) BS06 BCL ? GO:0015979 ... Q46393 36125941
    5346 8gwa:1 (2.9) BS07 BCL ? GO:0015979 ... Q46393 36125941
    5347 8gwa:1 (2.9) BS08 BCL ? GO:0015979 ... Q46393 36125941
    5348 8gwa:1 (2.9) BS09 BCL ? GO:0015979 ... Q46393 36125941
    5349 8gwa:1 (2.9) BS10 BCL ? GO:0015979 ... Q46393 36125941
    5350 8gwa:1 (2.9) BS11 BCL ? GO:0015979 ... Q46393 36125941
    5351 8gwa:2 (2.9) BS01 BCL ? GO:0015979 ... Q46393 36125941
    5352 8gwa:2 (2.9) BS02 BCL ? GO:0015979 ... Q46393 36125941
    5353 8gwa:2 (2.9) BS03 BCL ? GO:0015979 ... Q46393 36125941
    5354 8gwa:2 (2.9) BS04 BCL ? GO:0015979 ... Q46393 36125941
    5355 8gwa:2 (2.9) BS05 BCL ? GO:0015979 ... Q46393 36125941
    5356 8gwa:2 (2.9) BS06 BCL ? GO:0015979 ... Q46393 36125941
    5357 8gwa:2 (2.9) BS07 BCL ? GO:0015979 ... Q46393 36125941
    5358 8gwa:2 (2.9) BS08 BCL ? GO:0015979 ... Q46393 36125941
    5359 8gwa:2 (2.9) BS09 BCL ? GO:0015979 ... Q46393 36125941
    5360 8gwa:2 (2.9) BS10 BCL ? GO:0015979 ... Q46393 36125941
    5361 8gwa:2 (2.9) BS11 BCL ? GO:0015979 ... Q46393 36125941
    5362 8gwa:3 (2.9) BS01 BCL ? GO:0015979 ... Q46393 36125941
    5363 8gwa:3 (2.9) BS02 BCL ? GO:0015979 ... Q46393 36125941
    5364 8gwa:3 (2.9) BS03 BCL ? GO:0015979 ... Q46393 36125941
    5365 8gwa:3 (2.9) BS04 BCL ? GO:0015979 ... Q46393 36125941
    5366 8gwa:3 (2.9) BS05 BCL ? GO:0015979 ... Q46393 36125941
    5367 8gwa:3 (2.9) BS06 BCL ? GO:0015979 ... Q46393 36125941
    5368 8gwa:3 (2.9) BS07 BCL ? GO:0015979 ... Q46393 36125941
    5369 8gwa:3 (2.9) BS08 BCL ? GO:0015979 ... Q46393 36125941
    5370 8gwa:3 (2.9) BS09 BCL ? GO:0015979 ... Q46393 36125941
    5371 8gwa:3 (2.9) BS10 BCL ? GO:0015979 ... Q46393 36125941
    5372 8gwa:3 (2.9) BS11 BCL ? GO:0015979 ... Q46393 36125941
    5373 8gwa:4 (2.9) BS01 BCL ? GO:0015979 ... Q46393 36125941
    5374 8gwa:4 (2.9) BS02 BCL ? GO:0015979 ... Q46393 36125941
    5375 8gwa:4 (2.9) BS03 BCL ? GO:0015979 ... Q46393 36125941
    5376 8gwa:4 (2.9) BS04 BCL ? GO:0015979 ... Q46393 36125941
    5377 8gwa:4 (2.9) BS05 BCL ? GO:0015979 ... Q46393 36125941
    5378 8gwa:4 (2.9) BS06 BCL ? GO:0015979 ... Q46393 36125941
    5379 8gwa:4 (2.9) BS07 BCL ? GO:0015979 ... Q46393 36125941
    5380 8gwa:4 (2.9) BS08 BCL ? GO:0015979 ... Q46393 36125941
    5381 8gwa:4 (2.9) BS09 BCL ? GO:0015979 ... Q46393 36125941
    5382 8gwa:4 (2.9) BS10 BCL ? GO:0015979 ... Q46393 36125941
    5383 8gwa:4 (2.9) BS11 BCL ? GO:0015979 ... Q46393 36125941
    5384 8gwa:5 (2.9) BS01 BCL ? GO:0015979 ... Q46393 36125941
    5385 8gwa:5 (2.9) BS02 BCL ? GO:0015979 ... Q46393 36125941
    5386 8gwa:5 (2.9) BS03 BCL ? GO:0015979 ... Q46393 36125941
    5387 8gwa:5 (2.9) BS04 BCL ? GO:0015979 ... Q46393 36125941
    5388 8gwa:5 (2.9) BS05 BCL ? GO:0015979 ... Q46393 36125941
    5389 8gwa:5 (2.9) BS06 BCL ? GO:0015979 ... Q46393 36125941
    5390 8gwa:5 (2.9) BS07 BCL ? GO:0015979 ... Q46393 36125941
    5391 8gwa:5 (2.9) BS08 BCL ? GO:0015979 ... Q46393 36125941
    5392 8gwa:5 (2.9) BS09 BCL ? GO:0015979 ... Q46393 36125941
    5393 8gwa:5 (2.9) BS10 BCL ? GO:0015979 ... Q46393 36125941
    5394 8gwa:6 (2.9) BS01 BCL ? GO:0015979 ... Q46393 36125941
    5395 8gwa:6 (2.9) BS02 BCL ? GO:0015979 ... Q46393 36125941
    5396 8gwa:6 (2.9) BS03 BCL ? GO:0015979 ... Q46393 36125941
    5397 8gwa:6 (2.9) BS04 BCL ? GO:0015979 ... Q46393 36125941
    5398 8gwa:6 (2.9) BS05 BCL ? GO:0015979 ... Q46393 36125941
    5399 8gwa:6 (2.9) BS06 BCL ? GO:0015979 ... Q46393 36125941
    5400 8gwa:6 (2.9) BS07 BCL ? GO:0015979 ... Q46393 36125941
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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