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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6160 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5001 7zcu:N (2.7) BS03 BCL ? GO:0005886 ... P35106 36251992
    5002 7zcu:N (2.7) BS04 BCL ? GO:0005886 ... P35106 36251992
    5003 7zcu:O (2.7) BS01 BCL ? GO:0005886 ... P35101 36251992
    5004 7zcu:O (2.7) BS03 BCL ? GO:0005886 ... P35101 36251992
    5005 7zcu:O (2.7) BS04 BCL ? GO:0005886 ... P35101 36251992
    5006 7zcu:O (2.7) BS06 BCL ? GO:0005886 ... P35101 36251992
    5007 7zcu:P (2.7) BS01 BCL ? GO:0005886 ... P35106 36251992
    5008 7zcu:P (2.7) BS02 BCL ? GO:0005886 ... P35106 36251992
    5009 7zcu:P (2.7) BS03 BCL ? GO:0005886 ... P35106 36251992
    5010 7zcu:P (2.7) BS04 BCL ? GO:0005886 ... P35106 36251992
    5011 7zcu:P (2.7) BS06 BCL ? GO:0005886 ... P35106 36251992
    5012 7zcu:Q (2.7) BS01 BCL ? GO:0005886 ... P35101 36251992
    5013 7zcu:Q (2.7) BS03 BCL ? GO:0005886 ... P35101 36251992
    5014 7zcu:Q (2.7) BS05 BCL ? GO:0005886 ... P35101 36251992
    5015 7zcu:Q (2.7) BS06 BCL ? GO:0005886 ... P35101 36251992
    5016 7zcu:R (2.7) BS01 BCL ? GO:0005886 ... P35106 36251992
    5017 7zcu:R (2.7) BS02 BCL ? GO:0005886 ... P35106 36251992
    5018 7zcu:R (2.7) BS03 BCL ? GO:0005886 ... P35106 36251992
    5019 7zcu:R (2.7) BS04 BCL ? GO:0005886 ... P35106 36251992
    5020 7zcu:S (2.7) BS01 BCL ? N/A Q6N9P5 36251992
    5021 7zcu:S (2.7) BS02 BCL ? N/A Q6N9P5 36251992
    5022 7zcu:S (2.7) BS03 BCL ? N/A Q6N9P5 36251992
    5023 7zcu:S (2.7) BS04 BCL ? N/A Q6N9P5 36251992
    5024 7zcu:S (2.7) BS05 BCL ? N/A Q6N9P5 36251992
    5025 7zcu:S (2.7) BS06 BCL ? N/A Q6N9P5 36251992
    5026 7zdi:A (2.9) BS01 BCL ? GO:0005886 ... P35102 36251992
    5027 7zdi:A (2.9) BS04 BCL ? GO:0005886 ... P35102 36251992
    5028 7zdi:A (2.9) BS06 BCL ? GO:0005886 ... P35102 36251992
    5029 7zdi:B (2.9) BS01 BCL ? GO:0005886 ... P35107 36251992
    5030 7zdi:B (2.9) BS02 BCL ? GO:0005886 ... P35107 36251992
    5031 7zdi:B (2.9) BS04 BCL ? GO:0005886 ... P35107 36251992
    5032 7zdi:B (2.9) BS05 BCL ? GO:0005886 ... P35107 36251992
    5033 7zdi:C (2.9) BS03 BCL ? GO:0005886 ... P35102 36251992
    5034 7zdi:C (2.9) BS04 BCL ? GO:0005886 ... P35102 36251992
    5035 7zdi:C (2.9) BS05 BCL ? GO:0005886 ... P35102 36251992
    5036 7zdi:D (2.9) BS01 BCL ? GO:0005886 ... P35107 36251992
    5037 7zdi:D (2.9) BS03 BCL ? GO:0005886 ... P35107 36251992
    5038 7zdi:D (2.9) BS04 BCL ? GO:0005886 ... P35107 36251992
    5039 7zdi:D (2.9) BS05 BCL ? GO:0005886 ... P35107 36251992
    5040 7zdi:E (2.9) BS02 BCL ? GO:0005886 ... P35102 36251992
    5041 7zdi:E (2.9) BS03 BCL ? GO:0005886 ... P35102 36251992
    5042 7zdi:E (2.9) BS04 BCL ? GO:0005886 ... P35102 36251992
    5043 7zdi:F (2.9) BS01 BCL ? GO:0005886 ... P35107 36251992
    5044 7zdi:F (2.9) BS02 BCL ? GO:0005886 ... P35107 36251992
    5045 7zdi:F (2.9) BS03 BCL ? GO:0005886 ... P35107 36251992
    5046 7zdi:G (2.9) BS01 BCL ? GO:0005886 ... P35102 36251992
    5047 7zdi:G (2.9) BS03 BCL ? GO:0005886 ... P35102 36251992
    5048 7zdi:G (2.9) BS04 BCL ? GO:0005886 ... P35102 36251992
    5049 7zdi:H (2.9) BS01 BCL ? GO:0005886 ... P35107 36251992
    5050 7zdi:H (2.9) BS02 BCL ? GO:0005886 ... P35107 36251992
    5051 7zdi:H (2.9) BS03 BCL ? GO:0005886 ... P35107 36251992
    5052 7zdi:I (2.9) BS01 BCL ? GO:0005886 ... P35102 36251992
    5053 7zdi:I (2.9) BS03 BCL ? GO:0005886 ... P35102 36251992
    5054 7zdi:I (2.9) BS06 BCL ? GO:0005886 ... P35102 36251992
    5055 7zdi:J (2.9) BS01 BCL ? GO:0005886 ... P35107 36251992
    5056 7zdi:J (2.9) BS02 BCL ? GO:0005886 ... P35107 36251992
    5057 7zdi:J (2.9) BS03 BCL ? GO:0005886 ... P35107 36251992
    5058 7zdi:J (2.9) BS05 BCL ? GO:0005886 ... P35107 36251992
    5059 7zdi:K (2.9) BS03 BCL ? GO:0005886 ... P35102 36251992
    5060 7zdi:K (2.9) BS04 BCL ? GO:0005886 ... P35102 36251992
    5061 7zdi:K (2.9) BS06 BCL ? GO:0005886 ... P35102 36251992
    5062 7zdi:L (2.9) BS01 BCL ? GO:0005886 ... P35107 36251992
    5063 7zdi:L (2.9) BS03 BCL ? GO:0005886 ... P35107 36251992
    5064 7zdi:L (2.9) BS04 BCL ? GO:0005886 ... P35107 36251992
    5065 7zdi:L (2.9) BS05 BCL ? GO:0005886 ... P35107 36251992
    5066 7zdi:M (2.9) BS03 BCL ? GO:0005886 ... P35102 36251992
    5067 7zdi:M (2.9) BS04 BCL ? GO:0005886 ... P35102 36251992
    5068 7zdi:M (2.9) BS06 BCL ? GO:0005886 ... P35102 36251992
    5069 7zdi:N (2.9) BS01 BCL ? GO:0005886 ... P35107 36251992
    5070 7zdi:N (2.9) BS03 BCL ? GO:0005886 ... P35107 36251992
    5071 7zdi:N (2.9) BS04 BCL ? GO:0005886 ... P35107 36251992
    5072 7zdi:N (2.9) BS05 BCL ? GO:0005886 ... P35107 36251992
    5073 7zdi:O (2.9) BS02 BCL ? GO:0005886 ... P35102 36251992
    5074 7zdi:O (2.9) BS03 BCL ? GO:0005886 ... P35102 36251992
    5075 7zdi:O (2.9) BS05 BCL ? GO:0005886 ... P35102 36251992
    5076 7zdi:P (2.9) BS01 BCL ? GO:0005886 ... P35107 36251992
    5077 7zdi:P (2.9) BS03 BCL ? GO:0005886 ... P35107 36251992
    5078 7zdi:P (2.9) BS04 BCL ? GO:0005886 ... P35107 36251992
    5079 7zdi:P (2.9) BS05 BCL ? GO:0005886 ... P35107 36251992
    5080 7zdi:Q (2.9) BS04 BCL ? GO:0005886 ... P35102 36251992
    5081 7zdi:Q (2.9) BS05 BCL ? GO:0005886 ... P35102 36251992
    5082 7zdi:Q (2.9) BS06 BCL ? GO:0005886 ... P35102 36251992
    5083 7zdi:R (2.9) BS01 BCL ? GO:0005886 ... P35107 36251992
    5084 7zdi:R (2.9) BS03 BCL ? GO:0005886 ... P35107 36251992
    5085 7zdi:R (2.9) BS04 BCL ? GO:0005886 ... P35107 36251992
    5086 7zdi:R (2.9) BS05 BCL ? GO:0005886 ... P35107 36251992
    5087 7zdi:S (2.9) BS01 BCL ? N/A Q6N9P5 36251992
    5088 7zdi:S (2.9) BS02 BCL ? N/A Q6N9P5 36251992
    5089 7zdi:S (2.9) BS03 BCL ? N/A Q6N9P5 36251992
    5090 7zdi:S (2.9) BS04 BCL ? N/A Q6N9P5 36251992
    5091 7zdi:S (2.9) BS05 BCL ? N/A Q6N9P5 36251992
    5092 7zdi:S (2.9) BS06 BCL ? N/A Q6N9P5 36251992
    5093 7ze3:A (2.7) BS01 BCL ? GO:0005886 ... P35104 36251992
    5094 7ze3:A (2.7) BS02 BCL ? GO:0005886 ... P35104 36251992
    5095 7ze3:A (2.7) BS04 BCL ? GO:0005886 ... P35104 36251992
    5096 7ze3:A (2.7) BS06 BCL ? GO:0005886 ... P35104 36251992
    5097 7ze3:B (2.7) BS01 BCL ? GO:0005886 ... P35109 36251992
    5098 7ze3:B (2.7) BS02 BCL ? GO:0005886 ... P35109 36251992
    5099 7ze3:B (2.7) BS03 BCL ? GO:0005886 ... P35109 36251992
    5100 7ze3:B (2.7) BS05 BCL ? GO:0005886 ... P35109 36251992
    5101 7ze3:B (2.7) BS06 BCL ? GO:0005886 ... P35109 36251992
    5102 7ze3:C (2.7) BS03 BCL ? GO:0005886 ... P35104 36251992
    5103 7ze3:C (2.7) BS04 BCL ? GO:0005886 ... P35104 36251992
    5104 7ze3:C (2.7) BS06 BCL ? GO:0005886 ... P35104 36251992
    5105 7ze3:D (2.7) BS02 BCL ? GO:0005886 ... P35109 36251992
    5106 7ze3:D (2.7) BS03 BCL ? GO:0005886 ... P35109 36251992
    5107 7ze3:D (2.7) BS04 BCL ? GO:0005886 ... P35109 36251992
    5108 7ze3:D (2.7) BS05 BCL ? GO:0005886 ... P35109 36251992
    5109 7ze3:E (2.7) BS03 BCL ? GO:0005886 ... P35104 36251992
    5110 7ze3:E (2.7) BS04 BCL ? GO:0005886 ... P35104 36251992
    5111 7ze3:E (2.7) BS06 BCL ? GO:0005886 ... P35104 36251992
    5112 7ze3:E (2.7) BS07 BCL ? GO:0005886 ... P35104 36251992
    5113 7ze3:F (2.7) BS01 BCL ? GO:0005886 ... P35109 36251992
    5114 7ze3:F (2.7) BS03 BCL ? GO:0005886 ... P35109 36251992
    5115 7ze3:F (2.7) BS04 BCL ? GO:0005886 ... P35109 36251992
    5116 7ze3:F (2.7) BS05 BCL ? GO:0005886 ... P35109 36251992
    5117 7ze3:G (2.7) BS03 BCL ? GO:0005886 ... P35104 36251992
    5118 7ze3:G (2.7) BS04 BCL ? GO:0005886 ... P35104 36251992
    5119 7ze3:G (2.7) BS06 BCL ? GO:0005886 ... P35104 36251992
    5120 7ze3:G (2.7) BS07 BCL ? GO:0005886 ... P35104 36251992
    5121 7ze3:H (2.7) BS02 BCL ? GO:0005886 ... P35109 36251992
    5122 7ze3:H (2.7) BS03 BCL ? GO:0005886 ... P35109 36251992
    5123 7ze3:H (2.7) BS04 BCL ? GO:0005886 ... P35109 36251992
    5124 7ze3:I (2.7) BS03 BCL ? GO:0005886 ... P35104 36251992
    5125 7ze3:I (2.7) BS04 BCL ? GO:0005886 ... P35104 36251992
    5126 7ze3:I (2.7) BS06 BCL ? GO:0005886 ... P35104 36251992
    5127 7ze3:J (2.7) BS01 BCL ? GO:0005886 ... P35109 36251992
    5128 7ze3:J (2.7) BS03 BCL ? GO:0005886 ... P35109 36251992
    5129 7ze3:J (2.7) BS04 BCL ? GO:0005886 ... P35109 36251992
    5130 7ze3:J (2.7) BS05 BCL ? GO:0005886 ... P35109 36251992
    5131 7ze3:K (2.7) BS02 BCL ? GO:0005886 ... P35104 36251992
    5132 7ze3:K (2.7) BS04 BCL ? GO:0005886 ... P35104 36251992
    5133 7ze3:K (2.7) BS05 BCL ? GO:0005886 ... P35104 36251992
    5134 7ze3:L (2.7) BS01 BCL ? GO:0005886 ... P35109 36251992
    5135 7ze3:L (2.7) BS03 BCL ? GO:0005886 ... P35109 36251992
    5136 7ze3:L (2.7) BS04 BCL ? GO:0005886 ... P35109 36251992
    5137 7ze3:L (2.7) BS05 BCL ? GO:0005886 ... P35109 36251992
    5138 7ze3:M (2.7) BS03 BCL ? GO:0005886 ... P35104 36251992
    5139 7ze3:M (2.7) BS04 BCL ? GO:0005886 ... P35104 36251992
    5140 7ze3:M (2.7) BS06 BCL ? GO:0005886 ... P35104 36251992
    5141 7ze3:N (2.7) BS02 BCL ? GO:0005886 ... P35109 36251992
    5142 7ze3:N (2.7) BS03 BCL ? GO:0005886 ... P35109 36251992
    5143 7ze3:N (2.7) BS04 BCL ? GO:0005886 ... P35109 36251992
    5144 7ze3:O (2.7) BS03 BCL ? GO:0005886 ... P35104 36251992
    5145 7ze3:O (2.7) BS04 BCL ? GO:0005886 ... P35104 36251992
    5146 7ze3:O (2.7) BS06 BCL ? GO:0005886 ... P35104 36251992
    5147 7ze3:O (2.7) BS07 BCL ? GO:0005886 ... P35104 36251992
    5148 7ze3:P (2.7) BS01 BCL ? GO:0005886 ... P35109 36251992
    5149 7ze3:P (2.7) BS02 BCL ? GO:0005886 ... P35109 36251992
    5150 7ze3:P (2.7) BS04 BCL ? GO:0005886 ... P35109 36251992
    5151 7ze3:P (2.7) BS05 BCL ? GO:0005886 ... P35109 36251992
    5152 7ze3:P (2.7) BS06 BCL ? GO:0005886 ... P35109 36251992
    5153 7ze3:Q (2.7) BS01 BCL ? GO:0005886 ... P35104 36251992
    5154 7ze3:Q (2.7) BS05 BCL ? GO:0005886 ... P35104 36251992
    5155 7ze3:Q (2.7) BS06 BCL ? GO:0005886 ... P35104 36251992
    5156 7ze3:Q (2.7) BS07 BCL ? GO:0005886 ... P35104 36251992
    5157 7ze3:R (2.7) BS01 BCL ? GO:0005886 ... P35109 36251992
    5158 7ze3:R (2.7) BS02 BCL ? GO:0005886 ... P35109 36251992
    5159 7ze3:R (2.7) BS04 BCL ? GO:0005886 ... P35109 36251992
    5160 7ze3:R (2.7) BS05 BCL ? GO:0005886 ... P35109 36251992
    5161 7ze3:R (2.7) BS06 BCL ? GO:0005886 ... P35109 36251992
    5162 7ze3:S (2.7) BS01 BCL ? N/A Q6N9P5 36251992
    5163 7ze3:S (2.7) BS02 BCL ? N/A Q6N9P5 36251992
    5164 7ze3:S (2.7) BS03 BCL ? N/A Q6N9P5 36251992
    5165 7ze3:S (2.7) BS04 BCL ? N/A Q6N9P5 36251992
    5166 7ze3:S (2.7) BS05 BCL ? N/A Q6N9P5 36251992
    5167 7ze3:S (2.7) BS06 BCL ? N/A Q6N9P5 36251992
    5168 7ze8:A (3.6) BS01 BCL ? GO:0005886 ... P35105 36251992
    5169 7ze8:A (3.6) BS04 BCL ? GO:0005886 ... P35105 36251992
    5170 7ze8:A (3.6) BS05 BCL ? GO:0005886 ... P35105 36251992
    5171 7ze8:A (3.6) BS07 BCL ? GO:0005886 ... P35105 36251992
    5172 7ze8:B (3.6) BS01 BCL ? GO:0005886 ... P35107 36251992
    5173 7ze8:B (3.6) BS03 BCL ? GO:0005886 ... P35107 36251992
    5174 7ze8:C (3.6) BS02 BCL ? GO:0005886 ... P35105 36251992
    5175 7ze8:C (3.6) BS03 BCL ? GO:0005886 ... P35105 36251992
    5176 7ze8:C (3.6) BS04 BCL ? GO:0005886 ... P35105 36251992
    5177 7ze8:C (3.6) BS07 BCL ? GO:0005886 ... P35105 36251992
    5178 7ze8:C (3.6) BS08 BCL ? GO:0005886 ... P35105 36251992
    5179 7ze8:D (3.6) BS01 BCL ? GO:0005886 ... P35107 36251992
    5180 7ze8:D (3.6) BS03 BCL ? GO:0005886 ... P35107 36251992
    5181 7ze8:E (3.6) BS03 BCL ? GO:0005886 ... P35105 36251992
    5182 7ze8:E (3.6) BS04 BCL ? GO:0005886 ... P35105 36251992
    5183 7ze8:E (3.6) BS05 BCL ? GO:0005886 ... P35105 36251992
    5184 7ze8:E (3.6) BS06 BCL ? GO:0005886 ... P35105 36251992
    5185 7ze8:E (3.6) BS07 BCL ? GO:0005886 ... P35105 36251992
    5186 7ze8:F (3.6) BS02 BCL ? GO:0005886 ... P35107 36251992
    5187 7ze8:F (3.6) BS03 BCL ? GO:0005886 ... P35107 36251992
    5188 7ze8:F (3.6) BS04 BCL ? GO:0005886 ... P35107 36251992
    5189 7ze8:G (3.6) BS02 BCL ? GO:0005886 ... P35105 36251992
    5190 7ze8:G (3.6) BS03 BCL ? GO:0005886 ... P35105 36251992
    5191 7ze8:G (3.6) BS04 BCL ? GO:0005886 ... P35105 36251992
    5192 7ze8:G (3.6) BS07 BCL ? GO:0005886 ... P35105 36251992
    5193 7ze8:H (3.6) BS01 BCL ? GO:0005886 ... P35107 36251992
    5194 7ze8:H (3.6) BS03 BCL ? GO:0005886 ... P35107 36251992
    5195 7ze8:H (3.6) BS04 BCL ? GO:0005886 ... P35107 36251992
    5196 7ze8:I (3.6) BS03 BCL ? GO:0005886 ... P35105 36251992
    5197 7ze8:I (3.6) BS04 BCL ? GO:0005886 ... P35105 36251992
    5198 7ze8:I (3.6) BS06 BCL ? GO:0005886 ... P35105 36251992
    5199 7ze8:I (3.6) BS07 BCL ? GO:0005886 ... P35105 36251992
    5200 7ze8:J (3.6) BS02 BCL ? GO:0005886 ... P35107 36251992
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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