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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6160 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4801 7yml:E (2.6) BS04 BCL ? GO:0005886 ... P02950 36792596
    4802 7yml:E (2.6) BS05 BCL ? GO:0005886 ... P02950 36792596
    4803 7yml:F (2.6) BS03 BCL ? GO:0005886 ... P02948 36792596
    4804 7yml:F (2.6) BS04 BCL ? GO:0005886 ... P02948 36792596
    4805 7yml:F (2.6) BS05 BCL ? GO:0005886 ... P02948 36792596
    4806 7yml:F (2.6) BS06 BCL ? GO:0005886 ... P02948 36792596
    4807 7yml:G (2.6) BS02 BCL ? GO:0005886 ... P02950 36792596
    4808 7yml:G (2.6) BS04 BCL ? GO:0005886 ... P02950 36792596
    4809 7yml:I (2.6) BS02 BCL ? GO:0005886 ... P02948 36792596
    4810 7yml:I (2.6) BS03 BCL ? GO:0005886 ... P02948 36792596
    4811 7yml:I (2.6) BS06 BCL ? GO:0005886 ... P02948 36792596
    4812 7yml:J (2.6) BS02 BCL ? GO:0005886 ... P02950 36792596
    4813 7yml:J (2.6) BS04 BCL ? GO:0005886 ... P02950 36792596
    4814 7yml:K (2.6) BS03 BCL ? GO:0005886 ... P02948 36792596
    4815 7yml:K (2.6) BS04 BCL ? GO:0005886 ... P02948 36792596
    4816 7yml:K (2.6) BS05 BCL ? GO:0005886 ... P02948 36792596
    4817 7yml:L (2.6) BS01 BCL ? GO:0009772 ... P19057 36792596
    4818 7yml:L (2.6) BS05 BCL ? GO:0009772 ... P19057 36792596
    4819 7yml:L (2.6) BS07 BCL ? GO:0009772 ... P19057 36792596
    4820 7yml:M (2.6) BS02 BCL ? GO:0009772 ... P11847 36792596
    4821 7yml:M (2.6) BS03 BCL ? GO:0009772 ... P11847 36792596
    4822 7yml:M (2.6) BS04 BCL ? GO:0009772 ... P11847 36792596
    4823 7yml:N (2.6) BS02 BCL ? GO:0005886 ... P02950 36792596
    4824 7yml:N (2.6) BS04 BCL ? GO:0005886 ... P02950 36792596
    4825 7yml:O (2.6) BS02 BCL ? GO:0005886 ... P02948 36792596
    4826 7yml:O (2.6) BS05 BCL ? GO:0005886 ... P02948 36792596
    4827 7yml:O (2.6) BS06 BCL ? GO:0005886 ... P02948 36792596
    4828 7yml:P (2.6) BS01 BCL ? GO:0005886 ... P02950 36792596
    4829 7yml:P (2.6) BS04 BCL ? GO:0005886 ... P02950 36792596
    4830 7yml:P (2.6) BS05 BCL ? GO:0005886 ... P02950 36792596
    4831 7yml:Q (2.6) BS03 BCL ? GO:0005886 ... P02948 36792596
    4832 7yml:Q (2.6) BS04 BCL ? GO:0005886 ... P02948 36792596
    4833 7yml:Q (2.6) BS05 BCL ? GO:0005886 ... P02948 36792596
    4834 7yml:R (2.6) BS02 BCL ? GO:0005886 ... P02950 36792596
    4835 7yml:R (2.6) BS04 BCL ? GO:0005886 ... P02950 36792596
    4836 7yml:R (2.6) BS05 BCL ? GO:0005886 ... P02950 36792596
    4837 7yml:S (2.6) BS02 BCL ? GO:0005886 ... P02948 36792596
    4838 7yml:S (2.6) BS05 BCL ? GO:0005886 ... P02948 36792596
    4839 7yml:S (2.6) BS06 BCL ? GO:0005886 ... P02948 36792596
    4840 7yml:T (2.6) BS01 BCL ? GO:0005886 ... P02950 36792596
    4841 7yml:T (2.6) BS04 BCL ? GO:0005886 ... P02950 36792596
    4842 7yml:T (2.6) BS05 BCL ? GO:0005886 ... P02950 36792596
    4843 7yml:V (2.6) BS03 BCL ? GO:0005886 ... P02948 36792596
    4844 7yml:V (2.6) BS04 BCL ? GO:0005886 ... P02948 36792596
    4845 7yml:V (2.6) BS05 BCL ? GO:0005886 ... P02948 36792596
    4846 7yml:W (2.6) BS02 BCL ? GO:0005886 ... P02950 36792596
    4847 7yml:W (2.6) BS04 BCL ? GO:0005886 ... P02950 36792596
    4848 7yml:X (2.6) BS02 BCL ? GO:0005886 ... P26240 36792596
    4849 7yml:Y (2.6) BS02 BCL ? GO:0005886 ... P02948 36792596
    4850 7yml:Y (2.6) BS03 BCL ? GO:0005886 ... P02948 36792596
    4851 7yml:Z (2.6) BS01 BCL ? GO:0005886 ... P02950 36792596
    4852 7z6q:A (2.5) BS04 BCL ? GO:0009579 ... Q8KAY0 36693097
    4853 7z6q:A (2.5) BS05 BCL ? GO:0009579 ... Q8KAY0 36693097
    4854 7z6q:A (2.5) BS06 BCL ? GO:0009579 ... Q8KAY0 36693097
    4855 7z6q:A (2.5) BS07 BCL ? GO:0009579 ... Q8KAY0 36693097
    4856 7z6q:A (2.5) BS08 BCL ? GO:0009579 ... Q8KAY0 36693097
    4857 7z6q:A (2.5) BS09 BCL ? GO:0009579 ... Q8KAY0 36693097
    4858 7z6q:A (2.5) BS10 BCL ? GO:0009579 ... Q8KAY0 36693097
    4859 7z6q:A (2.5) BS11 BCL ? GO:0009579 ... Q8KAY0 36693097
    4860 7z6q:A (2.5) BS12 BCL ? GO:0009579 ... Q8KAY0 36693097
    4861 7z6q:A (2.5) BS13 BCL ? GO:0009579 ... Q8KAY0 36693097
    4862 7z6q:A (2.5) BS14 BCL ? GO:0009579 ... Q8KAY0 36693097
    4863 7z6q:A (2.5) BS15 BCL ? GO:0009579 ... Q8KAY0 36693097
    4864 7z6q:A (2.5) BS22 BCL ? GO:0009579 ... Q8KAY0 36693097
    4865 7z6q:C (2.5) BS02 BCL ? GO:0005886 ... O07091 36693097
    4866 7z6q:E (2.5) BS01 BCL ? GO:0015979 ... Q46393 36693097
    4867 7z6q:E (2.5) BS02 BCL ? GO:0015979 ... Q46393 36693097
    4868 7z6q:E (2.5) BS03 BCL ? GO:0015979 ... Q46393 36693097
    4869 7z6q:E (2.5) BS04 BCL ? GO:0015979 ... Q46393 36693097
    4870 7z6q:E (2.5) BS05 BCL ? GO:0015979 ... Q46393 36693097
    4871 7z6q:E (2.5) BS06 BCL ? GO:0015979 ... Q46393 36693097
    4872 7z6q:E (2.5) BS07 BCL ? GO:0015979 ... Q46393 36693097
    4873 7z6q:E (2.5) BS08 BCL ? GO:0015979 ... Q46393 36693097
    4874 7z6q:E (2.5) BS09 BCL ? GO:0015979 ... Q46393 36693097
    4875 7z6q:E (2.5) BS10 BCL ? GO:0015979 ... Q46393 36693097
    4876 7z6q:F (2.5) BS01 BCL ? GO:0015979 ... Q46393 36693097
    4877 7z6q:F (2.5) BS02 BCL ? GO:0015979 ... Q46393 36693097
    4878 7z6q:F (2.5) BS03 BCL ? GO:0015979 ... Q46393 36693097
    4879 7z6q:F (2.5) BS04 BCL ? GO:0015979 ... Q46393 36693097
    4880 7z6q:F (2.5) BS05 BCL ? GO:0015979 ... Q46393 36693097
    4881 7z6q:F (2.5) BS06 BCL ? GO:0015979 ... Q46393 36693097
    4882 7z6q:F (2.5) BS07 BCL ? GO:0015979 ... Q46393 36693097
    4883 7z6q:F (2.5) BS08 BCL ? GO:0015979 ... Q46393 36693097
    4884 7z6q:F (2.5) BS09 BCL ? GO:0015979 ... Q46393 36693097
    4885 7z6q:F (2.5) BS10 BCL ? GO:0015979 ... Q46393 36693097
    4886 7z6q:G (2.5) BS01 BCL ? GO:0015979 ... Q46393 36693097
    4887 7z6q:G (2.5) BS02 BCL ? GO:0015979 ... Q46393 36693097
    4888 7z6q:G (2.5) BS03 BCL ? GO:0015979 ... Q46393 36693097
    4889 7z6q:G (2.5) BS04 BCL ? GO:0015979 ... Q46393 36693097
    4890 7z6q:G (2.5) BS05 BCL ? GO:0015979 ... Q46393 36693097
    4891 7z6q:G (2.5) BS06 BCL ? GO:0015979 ... Q46393 36693097
    4892 7z6q:G (2.5) BS07 BCL ? GO:0015979 ... Q46393 36693097
    4893 7z6q:G (2.5) BS08 BCL ? GO:0015979 ... Q46393 36693097
    4894 7z6q:G (2.5) BS09 BCL ? GO:0015979 ... Q46393 36693097
    4895 7z6q:G (2.5) BS10 BCL ? GO:0015979 ... Q46393 36693097
    4896 7z6q:G (2.5) BS11 BCL ? GO:0015979 ... Q46393 36693097
    4897 7z6q:H (2.5) BS01 BCL ? GO:0015979 ... Q46393 36693097
    4898 7z6q:H (2.5) BS02 BCL ? GO:0015979 ... Q46393 36693097
    4899 7z6q:H (2.5) BS03 BCL ? GO:0015979 ... Q46393 36693097
    4900 7z6q:H (2.5) BS04 BCL ? GO:0015979 ... Q46393 36693097
    4901 7z6q:H (2.5) BS05 BCL ? GO:0015979 ... Q46393 36693097
    4902 7z6q:H (2.5) BS06 BCL ? GO:0015979 ... Q46393 36693097
    4903 7z6q:H (2.5) BS07 BCL ? GO:0015979 ... Q46393 36693097
    4904 7z6q:H (2.5) BS08 BCL ? GO:0015979 ... Q46393 36693097
    4905 7z6q:H (2.5) BS09 BCL ? GO:0015979 ... Q46393 36693097
    4906 7z6q:H (2.5) BS10 BCL ? GO:0015979 ... Q46393 36693097
    4907 7z6q:I (2.5) BS01 BCL ? GO:0015979 ... Q46393 36693097
    4908 7z6q:I (2.5) BS02 BCL ? GO:0015979 ... Q46393 36693097
    4909 7z6q:I (2.5) BS03 BCL ? GO:0015979 ... Q46393 36693097
    4910 7z6q:I (2.5) BS04 BCL ? GO:0015979 ... Q46393 36693097
    4911 7z6q:I (2.5) BS05 BCL ? GO:0015979 ... Q46393 36693097
    4912 7z6q:I (2.5) BS06 BCL ? GO:0015979 ... Q46393 36693097
    4913 7z6q:I (2.5) BS07 BCL ? GO:0015979 ... Q46393 36693097
    4914 7z6q:I (2.5) BS08 BCL ? GO:0015979 ... Q46393 36693097
    4915 7z6q:I (2.5) BS09 BCL ? GO:0015979 ... Q46393 36693097
    4916 7z6q:I (2.5) BS10 BCL ? GO:0015979 ... Q46393 36693097
    4917 7z6q:J (2.5) BS01 BCL ? GO:0015979 ... Q46393 36693097
    4918 7z6q:J (2.5) BS02 BCL ? GO:0015979 ... Q46393 36693097
    4919 7z6q:J (2.5) BS03 BCL ? GO:0015979 ... Q46393 36693097
    4920 7z6q:J (2.5) BS04 BCL ? GO:0015979 ... Q46393 36693097
    4921 7z6q:J (2.5) BS05 BCL ? GO:0015979 ... Q46393 36693097
    4922 7z6q:J (2.5) BS06 BCL ? GO:0015979 ... Q46393 36693097
    4923 7z6q:J (2.5) BS07 BCL ? GO:0015979 ... Q46393 36693097
    4924 7z6q:J (2.5) BS08 BCL ? GO:0015979 ... Q46393 36693097
    4925 7z6q:J (2.5) BS09 BCL ? GO:0015979 ... Q46393 36693097
    4926 7z6q:J (2.5) BS10 BCL ? GO:0015979 ... Q46393 36693097
    4927 7z6q:J (2.5) BS11 BCL ? GO:0015979 ... Q46393 36693097
    4928 7z6q:a (2.5) BS07 BCL ? GO:0009579 ... Q8KAY0 36693097
    4929 7z6q:a (2.5) BS08 BCL ? GO:0009579 ... Q8KAY0 36693097
    4930 7z6q:a (2.5) BS09 BCL ? GO:0009579 ... Q8KAY0 36693097
    4931 7z6q:a (2.5) BS10 BCL ? GO:0009579 ... Q8KAY0 36693097
    4932 7z6q:a (2.5) BS11 BCL ? GO:0009579 ... Q8KAY0 36693097
    4933 7z6q:a (2.5) BS12 BCL ? GO:0009579 ... Q8KAY0 36693097
    4934 7z6q:a (2.5) BS13 BCL ? GO:0009579 ... Q8KAY0 36693097
    4935 7z6q:a (2.5) BS14 BCL ? GO:0009579 ... Q8KAY0 36693097
    4936 7z6q:a (2.5) BS15 BCL ? GO:0009579 ... Q8KAY0 36693097
    4937 7z6q:a (2.5) BS16 BCL ? GO:0009579 ... Q8KAY0 36693097
    4938 7z6q:a (2.5) BS17 BCL ? GO:0009579 ... Q8KAY0 36693097
    4939 7z6q:a (2.5) BS18 BCL ? GO:0009579 ... Q8KAY0 36693097
    4940 7z6q:c (2.5) BS02 BCL ? GO:0005886 ... O07091 36693097
    4941 7z8d:L (2.14) BS01 BCL ? GO:0009772 ... P0C0Y8 N/A
    4942 7z8d:L (2.14) BS02 BCL ? GO:0009772 ... P0C0Y8 N/A
    4943 7z8d:L (2.14) BS04 BCL ? GO:0009772 ... P0C0Y8 N/A
    4944 7z8d:M (2.14) BS01 BCL ? GO:0009772 ... P0C0Y9 N/A
    4945 7z8d:M (2.14) BS06 BCL ? GO:0009772 ... P0C0Y9 N/A
    4946 7z8d:M (2.14) BS07 BCL ? GO:0009772 ... P0C0Y9 N/A
    4947 7zcu:A (2.7) BS01 BCL ? GO:0005886 ... P35101 36251992
    4948 7zcu:A (2.7) BS03 BCL ? GO:0005886 ... P35101 36251992
    4949 7zcu:A (2.7) BS05 BCL ? GO:0005886 ... P35101 36251992
    4950 7zcu:A (2.7) BS06 BCL ? GO:0005886 ... P35101 36251992
    4951 7zcu:B (2.7) BS01 BCL ? GO:0005886 ... P35106 36251992
    4952 7zcu:B (2.7) BS02 BCL ? GO:0005886 ... P35106 36251992
    4953 7zcu:B (2.7) BS03 BCL ? GO:0005886 ... P35106 36251992
    4954 7zcu:C (2.7) BS03 BCL ? GO:0005886 ... P35101 36251992
    4955 7zcu:C (2.7) BS04 BCL ? GO:0005886 ... P35101 36251992
    4956 7zcu:C (2.7) BS05 BCL ? GO:0005886 ... P35101 36251992
    4957 7zcu:D (2.7) BS02 BCL ? GO:0005886 ... P35106 36251992
    4958 7zcu:D (2.7) BS03 BCL ? GO:0005886 ... P35106 36251992
    4959 7zcu:D (2.7) BS04 BCL ? GO:0005886 ... P35106 36251992
    4960 7zcu:D (2.7) BS05 BCL ? GO:0005886 ... P35106 36251992
    4961 7zcu:E (2.7) BS02 BCL ? GO:0005886 ... P35101 36251992
    4962 7zcu:E (2.7) BS03 BCL ? GO:0005886 ... P35101 36251992
    4963 7zcu:E (2.7) BS04 BCL ? GO:0005886 ... P35101 36251992
    4964 7zcu:E (2.7) BS06 BCL ? GO:0005886 ... P35101 36251992
    4965 7zcu:F (2.7) BS01 BCL ? GO:0005886 ... P35106 36251992
    4966 7zcu:F (2.7) BS02 BCL ? GO:0005886 ... P35106 36251992
    4967 7zcu:F (2.7) BS03 BCL ? GO:0005886 ... P35106 36251992
    4968 7zcu:G (2.7) BS01 BCL ? GO:0005886 ... P35101 36251992
    4969 7zcu:G (2.7) BS03 BCL ? GO:0005886 ... P35101 36251992
    4970 7zcu:G (2.7) BS04 BCL ? GO:0005886 ... P35101 36251992
    4971 7zcu:G (2.7) BS05 BCL ? GO:0005886 ... P35101 36251992
    4972 7zcu:G (2.7) BS07 BCL ? GO:0005886 ... P35101 36251992
    4973 7zcu:H (2.7) BS01 BCL ? GO:0005886 ... P35106 36251992
    4974 7zcu:H (2.7) BS02 BCL ? GO:0005886 ... P35106 36251992
    4975 7zcu:H (2.7) BS03 BCL ? GO:0005886 ... P35106 36251992
    4976 7zcu:H (2.7) BS04 BCL ? GO:0005886 ... P35106 36251992
    4977 7zcu:H (2.7) BS06 BCL ? GO:0005886 ... P35106 36251992
    4978 7zcu:I (2.7) BS01 BCL ? GO:0005886 ... P35101 36251992
    4979 7zcu:I (2.7) BS03 BCL ? GO:0005886 ... P35101 36251992
    4980 7zcu:I (2.7) BS04 BCL ? GO:0005886 ... P35101 36251992
    4981 7zcu:I (2.7) BS07 BCL ? GO:0005886 ... P35101 36251992
    4982 7zcu:J (2.7) BS01 BCL ? GO:0005886 ... P35106 36251992
    4983 7zcu:J (2.7) BS02 BCL ? GO:0005886 ... P35106 36251992
    4984 7zcu:J (2.7) BS03 BCL ? GO:0005886 ... P35106 36251992
    4985 7zcu:J (2.7) BS04 BCL ? GO:0005886 ... P35106 36251992
    4986 7zcu:J (2.7) BS06 BCL ? GO:0005886 ... P35106 36251992
    4987 7zcu:K (2.7) BS01 BCL ? GO:0005886 ... P35101 36251992
    4988 7zcu:K (2.7) BS03 BCL ? GO:0005886 ... P35101 36251992
    4989 7zcu:K (2.7) BS05 BCL ? GO:0005886 ... P35101 36251992
    4990 7zcu:K (2.7) BS06 BCL ? GO:0005886 ... P35101 36251992
    4991 7zcu:L (2.7) BS01 BCL ? GO:0005886 ... P35106 36251992
    4992 7zcu:L (2.7) BS02 BCL ? GO:0005886 ... P35106 36251992
    4993 7zcu:L (2.7) BS03 BCL ? GO:0005886 ... P35106 36251992
    4994 7zcu:L (2.7) BS05 BCL ? GO:0005886 ... P35106 36251992
    4995 7zcu:M (2.7) BS01 BCL ? GO:0005886 ... P35101 36251992
    4996 7zcu:M (2.7) BS03 BCL ? GO:0005886 ... P35101 36251992
    4997 7zcu:M (2.7) BS04 BCL ? GO:0005886 ... P35101 36251992
    4998 7zcu:M (2.7) BS06 BCL ? GO:0005886 ... P35101 36251992
    4999 7zcu:N (2.7) BS01 BCL ? GO:0005886 ... P35106 36251992
    5000 7zcu:N (2.7) BS02 BCL ? GO:0005886 ... P35106 36251992
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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