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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6160 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4601 7vy2:n (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4602 7vy2:o (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4603 7vy2:o (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4604 7vy2:o (2.75) BS05 BCL N/A GO:0016020 ... N/A 35393413
    4605 7vy2:p (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4606 7vy2:p (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4607 7vy2:q (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4608 7vy2:q (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4609 7vy2:q (2.75) BS05 BCL N/A GO:0016020 ... N/A 35393413
    4610 7vy2:r (2.75) BS01 BCL N/A GO:0016020 ... N/A 35393413
    4611 7vy2:r (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4612 7vy2:r (2.75) BS06 BCL N/A GO:0016020 ... N/A 35393413
    4613 7vy2:s (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4614 7vy2:s (2.75) BS05 BCL N/A GO:0016020 ... N/A 35393413
    4615 7vy2:s (2.75) BS06 BCL N/A GO:0016020 ... N/A 35393413
    4616 7vy2:t (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4617 7vy2:t (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4618 7vy2:t (2.75) BS05 BCL N/A GO:0016020 ... N/A 35393413
    4619 7vy2:v (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4620 7vy2:v (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4621 7vy2:v (2.75) BS05 BCL N/A GO:0016020 ... N/A 35393413
    4622 7vy2:w (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4623 7vy2:w (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4624 7vy2:y (2.75) BS03 BCL N/A GO:0016020 ... N/A 35393413
    4625 7vy2:y (2.75) BS05 BCL N/A GO:0016020 ... N/A 35393413
    4626 7vy2:z (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4627 7vy2:z (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4628 7vy3:A (2.63) BS01 BCL N/A GO:0016020 ... N/A 35393413
    4629 7vy3:A (2.63) BS03 BCL N/A GO:0016020 ... N/A 35393413
    4630 7vy3:A (2.63) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4631 7vy3:B (2.63) BS01 BCL N/A GO:0016020 ... N/A 35393413
    4632 7vy3:B (2.63) BS03 BCL N/A GO:0016020 ... N/A 35393413
    4633 7vy3:D (2.63) BS01 BCL N/A GO:0016020 ... N/A 35393413
    4634 7vy3:D (2.63) BS05 BCL N/A GO:0016020 ... N/A 35393413
    4635 7vy3:D (2.63) BS06 BCL N/A GO:0016020 ... N/A 35393413
    4636 7vy3:E (2.63) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4637 7vy3:E (2.63) BS05 BCL N/A GO:0016020 ... N/A 35393413
    4638 7vy3:F (2.63) BS03 BCL N/A GO:0016020 ... N/A 35393413
    4639 7vy3:F (2.63) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4640 7vy3:F (2.63) BS06 BCL N/A GO:0016020 ... N/A 35393413
    4641 7vy3:G (2.63) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4642 7vy3:G (2.63) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4643 7vy3:I (2.63) BS03 BCL N/A GO:0016020 ... N/A 35393413
    4644 7vy3:I (2.63) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4645 7vy3:I (2.63) BS05 BCL N/A GO:0016020 ... N/A 35393413
    4646 7vy3:J (2.63) BS03 BCL N/A GO:0016020 ... N/A 35393413
    4647 7vy3:J (2.63) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4648 7vy3:K (2.63) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4649 7vy3:K (2.63) BS05 BCL N/A GO:0016020 ... N/A 35393413
    4650 7vy3:K (2.63) BS06 BCL N/A GO:0016020 ... N/A 35393413
    4651 7vy3:L (2.63) BS01 BCL N/A GO:0009772 ... N/A 35393413
    4652 7vy3:L (2.63) BS05 BCL N/A GO:0009772 ... N/A 35393413
    4653 7vy3:L (2.63) BS06 BCL N/A GO:0009772 ... N/A 35393413
    4654 7vy3:M (2.63) BS04 BCL N/A GO:0009772 ... N/A 35393413
    4655 7vy3:M (2.63) BS05 BCL N/A GO:0009772 ... N/A 35393413
    4656 7vy3:M (2.63) BS06 BCL N/A GO:0009772 ... N/A 35393413
    4657 7vy3:N (2.63) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4658 7vy3:N (2.63) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4659 7vy3:O (2.63) BS03 BCL N/A GO:0016020 ... N/A 35393413
    4660 7vy3:O (2.63) BS05 BCL N/A GO:0016020 ... N/A 35393413
    4661 7vy3:O (2.63) BS06 BCL N/A GO:0016020 ... N/A 35393413
    4662 7vy3:P (2.63) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4663 7vy3:P (2.63) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4664 7vy3:Q (2.63) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4665 7vy3:Q (2.63) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4666 7vy3:R (2.63) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4667 7vy3:R (2.63) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4668 7vy3:S (2.63) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4669 7vy3:S (2.63) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4670 7vy3:S (2.63) BS05 BCL N/A GO:0016020 ... N/A 35393413
    4671 7vy3:T (2.63) BS01 BCL N/A GO:0016020 ... N/A 35393413
    4672 7vy3:T (2.63) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4673 7vy3:V (2.63) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4674 7vy3:V (2.63) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4675 7vy3:W (2.63) BS01 BCL N/A GO:0016020 ... N/A 35393413
    4676 7vy3:W (2.63) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4677 7vy3:Y (2.63) BS03 BCL N/A GO:0016020 ... N/A 35393413
    4678 7vy3:Y (2.63) BS05 BCL N/A GO:0016020 ... N/A 35393413
    4679 7vy3:Z (2.63) BS01 BCL N/A GO:0016020 ... N/A 35393413
    4680 7vy3:Z (2.63) BS03 BCL N/A GO:0016020 ... N/A 35393413
    4681 7vzg:A (2.61) BS03 BCL ? GO:0009579 ... G2LDR8 36517472
    4682 7vzg:A (2.61) BS04 BCL ? GO:0009579 ... G2LDR8 36517472
    4683 7vzg:A (2.61) BS05 BCL ? GO:0009579 ... G2LDR8 36517472
    4684 7vzg:A (2.61) BS06 BCL ? GO:0009579 ... G2LDR8 36517472
    4685 7vzg:A (2.61) BS07 BCL ? GO:0009579 ... G2LDR8 36517472
    4686 7vzg:A (2.61) BS08 BCL ? GO:0009579 ... G2LDR8 36517472
    4687 7vzg:A (2.61) BS09 BCL ? GO:0009579 ... G2LDR8 36517472
    4688 7vzg:A (2.61) BS10 BCL ? GO:0009579 ... G2LDR8 36517472
    4689 7vzg:a (2.61) BS07 BCL ? GO:0009579 ... G2LDR8 36517472
    4690 7vzg:a (2.61) BS08 BCL ? GO:0009579 ... G2LDR8 36517472
    4691 7vzg:a (2.61) BS09 BCL ? GO:0009579 ... G2LDR8 36517472
    4692 7vzg:a (2.61) BS10 BCL ? GO:0009579 ... G2LDR8 36517472
    4693 7vzg:a (2.61) BS11 BCL ? GO:0009579 ... G2LDR8 36517472
    4694 7vzg:a (2.61) BS12 BCL ? GO:0009579 ... G2LDR8 36517472
    4695 7vzg:a (2.61) BS13 BCL ? GO:0009579 ... G2LDR8 36517472
    4696 7vzg:a (2.61) BS14 BCL ? GO:0009579 ... G2LDR8 36517472
    4697 7vzg:e (2.61) BS01 BCL ? N/A G2LK98 36517472
    4698 7vzr:A (2.22) BS03 BCL ? GO:0009579 ... G2LDR8 N/A
    4699 7vzr:A (2.22) BS04 BCL ? GO:0009579 ... G2LDR8 N/A
    4700 7vzr:A (2.22) BS05 BCL ? GO:0009579 ... G2LDR8 N/A
    4701 7vzr:A (2.22) BS06 BCL ? GO:0009579 ... G2LDR8 N/A
    4702 7vzr:A (2.22) BS07 BCL ? GO:0009579 ... G2LDR8 N/A
    4703 7vzr:A (2.22) BS08 BCL ? GO:0009579 ... G2LDR8 N/A
    4704 7vzr:A (2.22) BS09 BCL ? GO:0009579 ... G2LDR8 N/A
    4705 7vzr:A (2.22) BS10 BCL ? GO:0009579 ... G2LDR8 N/A
    4706 7vzr:a (2.22) BS07 BCL ? GO:0009579 ... G2LDR8 N/A
    4707 7vzr:a (2.22) BS08 BCL ? GO:0009579 ... G2LDR8 N/A
    4708 7vzr:a (2.22) BS09 BCL ? GO:0009579 ... G2LDR8 N/A
    4709 7vzr:a (2.22) BS10 BCL ? GO:0009579 ... G2LDR8 N/A
    4710 7vzr:a (2.22) BS11 BCL ? GO:0009579 ... G2LDR8 N/A
    4711 7vzr:a (2.22) BS12 BCL ? GO:0009579 ... G2LDR8 N/A
    4712 7vzr:a (2.22) BS13 BCL ? GO:0009579 ... G2LDR8 N/A
    4713 7vzr:a (2.22) BS14 BCL ? GO:0009579 ... G2LDR8 N/A
    4714 7vzr:e (2.22) BS01 BCL ? N/A G2LK98 N/A
    4715 7xxf:0 (2.24) BS03 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4716 7xxf:0 (2.24) BS04 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4717 7xxf:0 (2.24) BS05 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4718 7xxf:1 (2.24) BS02 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4719 7xxf:1 (2.24) BS03 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4720 7xxf:2 (2.24) BS02 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4721 7xxf:2 (2.24) BS03 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4722 7xxf:2 (2.24) BS04 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4723 7xxf:3 (2.24) BS02 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4724 7xxf:3 (2.24) BS04 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4725 7xxf:4 (2.24) BS02 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4726 7xxf:4 (2.24) BS04 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4727 7xxf:5 (2.24) BS02 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4728 7xxf:5 (2.24) BS04 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4729 7xxf:5 (2.24) BS05 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4730 7xxf:6 (2.24) BS01 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4731 7xxf:6 (2.24) BS02 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4732 7xxf:6 (2.24) BS04 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4733 7xxf:7 (2.24) BS03 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4734 7xxf:7 (2.24) BS04 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4735 7xxf:7 (2.24) BS05 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4736 7xxf:8 (2.24) BS01 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4737 7xxf:8 (2.24) BS03 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4738 7xxf:9 (2.24) BS05 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4739 7xxf:9 (2.24) BS06 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4740 7xxf:A (2.24) BS01 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4741 7xxf:A (2.24) BS03 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4742 7xxf:B (2.24) BS03 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4743 7xxf:B (2.24) BS04 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4744 7xxf:D (2.24) BS03 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4745 7xxf:D (2.24) BS05 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4746 7xxf:E (2.24) BS03 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4747 7xxf:E (2.24) BS05 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4748 7xxf:F (2.24) BS02 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4749 7xxf:F (2.24) BS03 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4750 7xxf:G (2.24) BS03 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4751 7xxf:G (2.24) BS04 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4752 7xxf:I (2.24) BS02 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4753 7xxf:I (2.24) BS03 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4754 7xxf:J (2.24) BS03 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4755 7xxf:J (2.24) BS04 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4756 7xxf:K (2.24) BS02 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4757 7xxf:K (2.24) BS04 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4758 7xxf:L (2.24) BS01 BCL ? GO:0009772 ... A0A2S6NEG7 36344631
    4759 7xxf:L (2.24) BS06 BCL ? GO:0009772 ... A0A2S6NEG7 36344631
    4760 7xxf:L (2.24) BS08 BCL ? GO:0009772 ... A0A2S6NEG7 36344631
    4761 7xxf:M (2.24) BS02 BCL ? GO:0009772 ... A0A2S6NEP5 36344631
    4762 7xxf:M (2.24) BS04 BCL ? GO:0009772 ... A0A2S6NEP5 36344631
    4763 7xxf:M (2.24) BS05 BCL ? GO:0009772 ... A0A2S6NEP5 36344631
    4764 7xxf:N (2.24) BS03 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4765 7xxf:N (2.24) BS05 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4766 7xxf:O (2.24) BS02 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4767 7xxf:O (2.24) BS03 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4768 7xxf:P (2.24) BS03 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4769 7xxf:P (2.24) BS04 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4770 7xxf:Q (2.24) BS02 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4771 7xxf:Q (2.24) BS03 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4772 7xxf:R (2.24) BS03 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4773 7xxf:R (2.24) BS05 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4774 7xxf:S (2.24) BS02 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4775 7xxf:S (2.24) BS04 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4776 7xxf:T (2.24) BS02 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4777 7xxf:T (2.24) BS04 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4778 7xxf:U (2.24) BS02 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4779 7xxf:U (2.24) BS04 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4780 7xxf:V (2.24) BS02 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4781 7xxf:V (2.24) BS03 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4782 7xxf:V (2.24) BS05 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4783 7xxf:W (2.24) BS02 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4784 7xxf:W (2.24) BS04 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4785 7xxf:X (2.24) BS03 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4786 7xxf:X (2.24) BS05 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4787 7xxf:Y (2.24) BS02 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4788 7xxf:Y (2.24) BS03 BCL ? GO:0005886 ... A0A2S6NEK3 36344631
    4789 7xxf:Z (2.24) BS02 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4790 7xxf:Z (2.24) BS03 BCL ? GO:0005886 ... A0A2S6NEL9 36344631
    4791 7yml:A (2.6) BS02 BCL ? GO:0005886 ... P02948 36792596
    4792 7yml:A (2.6) BS03 BCL ? GO:0005886 ... P02948 36792596
    4793 7yml:A (2.6) BS05 BCL ? GO:0005886 ... P02948 36792596
    4794 7yml:B (2.6) BS01 BCL ? GO:0005886 ... P02950 36792596
    4795 7yml:B (2.6) BS02 BCL ? GO:0005886 ... P02950 36792596
    4796 7yml:B (2.6) BS04 BCL ? GO:0005886 ... P02950 36792596
    4797 7yml:D (2.6) BS03 BCL ? GO:0005886 ... P02948 36792596
    4798 7yml:D (2.6) BS06 BCL ? GO:0005886 ... P02948 36792596
    4799 7yml:D (2.6) BS07 BCL ? GO:0005886 ... P02948 36792596
    4800 7yml:E (2.6) BS01 BCL ? GO:0005886 ... P02950 36792596
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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