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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6160 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4401 7voy:U (4.2) BS02 BCL ? GO:0005886 ... Q3J1A4 35418573
    4402 7voy:V (4.2) BS01 BCL ? GO:0005886 ... Q3J1A3 35418573
    4403 7voy:V (4.2) BS02 BCL ? GO:0005886 ... Q3J1A3 35418573
    4404 7voy:W (4.2) BS01 BCL ? GO:0005886 ... Q3J1A4 35418573
    4405 7voy:W (4.2) BS02 BCL ? GO:0005886 ... Q3J1A4 35418573
    4406 7voy:X (4.2) BS01 BCL ? GO:0005886 ... Q3J1A3 35418573
    4407 7voy:X (4.2) BS02 BCL ? GO:0005886 ... Q3J1A3 35418573
    4408 7voy:Y (4.2) BS01 BCL ? GO:0005886 ... Q3J1A4 35418573
    4409 7voy:Y (4.2) BS02 BCL ? GO:0005886 ... Q3J1A4 35418573
    4410 7voy:Z (4.2) BS01 BCL ? GO:0005886 ... Q3J1A3 35418573
    4411 7voy:Z (4.2) BS02 BCL ? GO:0005886 ... Q3J1A3 35418573
    4412 7voy:t (4.2) BS01 BCL ? GO:0005886 ... Q3J1A3 35418573
    4413 7voy:t (4.2) BS02 BCL ? GO:0005886 ... Q3J1A3 35418573
    4414 7vrj:0 (2.81) BS02 BCL N/A GO:0016020 ... N/A 35460693
    4415 7vrj:0 (2.81) BS03 BCL N/A GO:0016020 ... N/A 35460693
    4416 7vrj:1 (2.81) BS02 BCL N/A GO:0016020 ... N/A 35460693
    4417 7vrj:1 (2.81) BS03 BCL N/A GO:0016020 ... N/A 35460693
    4418 7vrj:2 (2.81) BS01 BCL N/A GO:0016020 ... N/A 35460693
    4419 7vrj:2 (2.81) BS02 BCL N/A GO:0016020 ... N/A 35460693
    4420 7vrj:3 (2.81) BS02 BCL N/A GO:0016020 ... N/A 35460693
    4421 7vrj:3 (2.81) BS03 BCL N/A GO:0016020 ... N/A 35460693
    4422 7vrj:4 (2.81) BS01 BCL N/A GO:0016020 ... N/A 35460693
    4423 7vrj:4 (2.81) BS02 BCL N/A GO:0016020 ... N/A 35460693
    4424 7vrj:5 (2.81) BS02 BCL N/A GO:0016020 ... N/A 35460693
    4425 7vrj:5 (2.81) BS03 BCL N/A GO:0016020 ... N/A 35460693
    4426 7vrj:6 (2.81) BS01 BCL N/A GO:0016020 ... N/A 35460693
    4427 7vrj:6 (2.81) BS02 BCL N/A GO:0016020 ... N/A 35460693
    4428 7vrj:7 (2.81) BS03 BCL N/A GO:0016020 ... N/A 35460693
    4429 7vrj:7 (2.81) BS04 BCL N/A GO:0016020 ... N/A 35460693
    4430 7vrj:8 (2.81) BS01 BCL N/A GO:0016020 ... N/A 35460693
    4431 7vrj:8 (2.81) BS02 BCL N/A GO:0016020 ... N/A 35460693
    4432 7vrj:9 (2.81) BS03 BCL N/A GO:0016020 ... N/A 35460693
    4433 7vrj:9 (2.81) BS04 BCL N/A GO:0016020 ... N/A 35460693
    4434 7vrj:A (2.81) BS01 BCL N/A GO:0016020 ... N/A 35460693
    4435 7vrj:A (2.81) BS02 BCL N/A GO:0016020 ... N/A 35460693
    4436 7vrj:B (2.81) BS01 BCL N/A GO:0016020 ... N/A 35460693
    4437 7vrj:B (2.81) BS02 BCL N/A GO:0016020 ... N/A 35460693
    4438 7vrj:D (2.81) BS02 BCL N/A GO:0016020 ... N/A 35460693
    4439 7vrj:D (2.81) BS04 BCL N/A GO:0016020 ... N/A 35460693
    4440 7vrj:E (2.81) BS01 BCL N/A GO:0016020 ... N/A 35460693
    4441 7vrj:E (2.81) BS02 BCL N/A GO:0016020 ... N/A 35460693
    4442 7vrj:F (2.81) BS02 BCL N/A GO:0016020 ... N/A 35460693
    4443 7vrj:F (2.81) BS04 BCL N/A GO:0016020 ... N/A 35460693
    4444 7vrj:G (2.81) BS01 BCL N/A GO:0016020 ... N/A 35460693
    4445 7vrj:I (2.81) BS02 BCL N/A GO:0016020 ... N/A 35460693
    4446 7vrj:I (2.81) BS03 BCL N/A GO:0016020 ... N/A 35460693
    4447 7vrj:J (2.81) BS01 BCL N/A GO:0016020 ... N/A 35460693
    4448 7vrj:K (2.81) BS02 BCL N/A GO:0016020 ... N/A 35460693
    4449 7vrj:K (2.81) BS03 BCL N/A GO:0016020 ... N/A 35460693
    4450 7vrj:L (2.81) BS01 BCL N/A GO:0009772 ... N/A 35460693
    4451 7vrj:L (2.81) BS05 BCL N/A GO:0009772 ... N/A 35460693
    4452 7vrj:L (2.81) BS06 BCL N/A GO:0009772 ... N/A 35460693
    4453 7vrj:M (2.81) BS02 BCL N/A GO:0009772 ... N/A 35460693
    4454 7vrj:M (2.81) BS03 BCL N/A GO:0009772 ... N/A 35460693
    4455 7vrj:M (2.81) BS05 BCL N/A GO:0009772 ... N/A 35460693
    4456 7vrj:N (2.81) BS01 BCL N/A GO:0016020 ... N/A 35460693
    4457 7vrj:N (2.81) BS02 BCL N/A GO:0016020 ... N/A 35460693
    4458 7vrj:O (2.81) BS01 BCL N/A GO:0016020 ... N/A 35460693
    4459 7vrj:O (2.81) BS02 BCL N/A GO:0016020 ... N/A 35460693
    4460 7vrj:P (2.81) BS01 BCL N/A GO:0016020 ... N/A 35460693
    4461 7vrj:P (2.81) BS02 BCL N/A GO:0016020 ... N/A 35460693
    4462 7vrj:Q (2.81) BS02 BCL N/A GO:0016020 ... N/A 35460693
    4463 7vrj:Q (2.81) BS04 BCL N/A GO:0016020 ... N/A 35460693
    4464 7vrj:R (2.81) BS01 BCL N/A GO:0016020 ... N/A 35460693
    4465 7vrj:S (2.81) BS03 BCL N/A GO:0016020 ... N/A 35460693
    4466 7vrj:S (2.81) BS06 BCL N/A GO:0016020 ... N/A 35460693
    4467 7vrj:T (2.81) BS02 BCL N/A GO:0016020 ... N/A 35460693
    4468 7vrj:T (2.81) BS03 BCL N/A GO:0016020 ... N/A 35460693
    4469 7vrj:U (2.81) BS02 BCL N/A GO:0016020 ... N/A 35460693
    4470 7vrj:U (2.81) BS04 BCL N/A GO:0016020 ... N/A 35460693
    4471 7vrj:V (2.81) BS02 BCL N/A GO:0016020 ... N/A 35460693
    4472 7vrj:V (2.81) BS03 BCL N/A GO:0016020 ... N/A 35460693
    4473 7vrj:W (2.81) BS02 BCL N/A GO:0016020 ... N/A 35460693
    4474 7vrj:W (2.81) BS04 BCL N/A GO:0016020 ... N/A 35460693
    4475 7vrj:X (2.81) BS01 BCL N/A GO:0016020 ... N/A 35460693
    4476 7vrj:X (2.81) BS02 BCL N/A GO:0016020 ... N/A 35460693
    4477 7vrj:Y (2.81) BS02 BCL N/A GO:0016020 ... N/A 35460693
    4478 7vrj:Y (2.81) BS04 BCL N/A GO:0016020 ... N/A 35460693
    4479 7vrj:Z (2.81) BS01 BCL N/A GO:0016020 ... N/A 35460693
    4480 7vrj:Z (2.81) BS02 BCL N/A GO:0016020 ... N/A 35460693
    4481 7vy2:01 (2.75) BS03 BCL N/A GO:0016020 ... N/A 35393413
    4482 7vy2:01 (2.75) BS06 BCL N/A GO:0016020 ... N/A 35393413
    4483 7vy2:02 (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4484 7vy2:02 (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4485 7vy2:03 (2.75) BS03 BCL N/A GO:0016020 ... N/A 35393413
    4486 7vy2:03 (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4487 7vy2:03 (2.75) BS05 BCL N/A GO:0016020 ... N/A 35393413
    4488 7vy2:04 (2.75) BS03 BCL N/A GO:0016020 ... N/A 35393413
    4489 7vy2:05 (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4490 7vy2:05 (2.75) BS05 BCL N/A GO:0016020 ... N/A 35393413
    4491 7vy2:06 (2.75) BS01 BCL N/A GO:0016020 ... N/A 35393413
    4492 7vy2:06 (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4493 7vy2:07 (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4494 7vy2:07 (2.75) BS03 BCL N/A GO:0016020 ... N/A 35393413
    4495 7vy2:08 (2.75) BS01 BCL N/A GO:0016020 ... N/A 35393413
    4496 7vy2:08 (2.75) BS03 BCL N/A GO:0016020 ... N/A 35393413
    4497 7vy2:1 (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4498 7vy2:1 (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4499 7vy2:2 (2.75) BS01 BCL N/A GO:0016020 ... N/A 35393413
    4500 7vy2:2 (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4501 7vy2:2 (2.75) BS05 BCL N/A GO:0016020 ... N/A 35393413
    4502 7vy2:3 (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4503 7vy2:3 (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4504 7vy2:4 (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4505 7vy2:4 (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4506 7vy2:5 (2.75) BS03 BCL N/A GO:0016020 ... N/A 35393413
    4507 7vy2:5 (2.75) BS05 BCL N/A GO:0016020 ... N/A 35393413
    4508 7vy2:6 (2.75) BS01 BCL N/A GO:0016020 ... N/A 35393413
    4509 7vy2:6 (2.75) BS03 BCL N/A GO:0016020 ... N/A 35393413
    4510 7vy2:7 (2.75) BS01 BCL N/A GO:0016020 ... N/A 35393413
    4511 7vy2:7 (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4512 7vy2:8 (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4513 7vy2:8 (2.75) BS03 BCL N/A GO:0016020 ... N/A 35393413
    4514 7vy2:A (2.75) BS01 BCL N/A GO:0016020 ... N/A 35393413
    4515 7vy2:A (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4516 7vy2:A (2.75) BS05 BCL N/A GO:0016020 ... N/A 35393413
    4517 7vy2:B (2.75) BS01 BCL N/A GO:0016020 ... N/A 35393413
    4518 7vy2:B (2.75) BS03 BCL N/A GO:0016020 ... N/A 35393413
    4519 7vy2:D (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4520 7vy2:D (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4521 7vy2:D (2.75) BS05 BCL N/A GO:0016020 ... N/A 35393413
    4522 7vy2:E (2.75) BS03 BCL N/A GO:0016020 ... N/A 35393413
    4523 7vy2:E (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4524 7vy2:F (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4525 7vy2:F (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4526 7vy2:F (2.75) BS05 BCL N/A GO:0016020 ... N/A 35393413
    4527 7vy2:G (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4528 7vy2:G (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4529 7vy2:I (2.75) BS03 BCL N/A GO:0016020 ... N/A 35393413
    4530 7vy2:I (2.75) BS06 BCL N/A GO:0016020 ... N/A 35393413
    4531 7vy2:I (2.75) BS07 BCL N/A GO:0016020 ... N/A 35393413
    4532 7vy2:J (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4533 7vy2:J (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4534 7vy2:J (2.75) BS05 BCL N/A GO:0016020 ... N/A 35393413
    4535 7vy2:K (2.75) BS03 BCL N/A GO:0016020 ... N/A 35393413
    4536 7vy2:K (2.75) BS05 BCL N/A GO:0016020 ... N/A 35393413
    4537 7vy2:K (2.75) BS06 BCL N/A GO:0016020 ... N/A 35393413
    4538 7vy2:L (2.75) BS01 BCL N/A GO:0009772 ... N/A 35393413
    4539 7vy2:L (2.75) BS05 BCL N/A GO:0009772 ... N/A 35393413
    4540 7vy2:L (2.75) BS06 BCL N/A GO:0009772 ... N/A 35393413
    4541 7vy2:M (2.75) BS03 BCL N/A GO:0009772 ... N/A 35393413
    4542 7vy2:M (2.75) BS04 BCL N/A GO:0009772 ... N/A 35393413
    4543 7vy2:M (2.75) BS05 BCL N/A GO:0009772 ... N/A 35393413
    4544 7vy2:N (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4545 7vy2:N (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4546 7vy2:O (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4547 7vy2:O (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4548 7vy2:O (2.75) BS05 BCL N/A GO:0016020 ... N/A 35393413
    4549 7vy2:P (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4550 7vy2:P (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4551 7vy2:P (2.75) BS05 BCL N/A GO:0016020 ... N/A 35393413
    4552 7vy2:Q (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4553 7vy2:Q (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4554 7vy2:Q (2.75) BS05 BCL N/A GO:0016020 ... N/A 35393413
    4555 7vy2:R (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4556 7vy2:R (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4557 7vy2:S (2.75) BS03 BCL N/A GO:0016020 ... N/A 35393413
    4558 7vy2:S (2.75) BS05 BCL N/A GO:0016020 ... N/A 35393413
    4559 7vy2:T (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4560 7vy2:T (2.75) BS03 BCL N/A GO:0016020 ... N/A 35393413
    4561 7vy2:V (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4562 7vy2:V (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4563 7vy2:V (2.75) BS05 BCL N/A GO:0016020 ... N/A 35393413
    4564 7vy2:W (2.75) BS03 BCL N/A GO:0016020 ... N/A 35393413
    4565 7vy2:W (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4566 7vy2:Y (2.75) BS03 BCL N/A GO:0016020 ... N/A 35393413
    4567 7vy2:Y (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4568 7vy2:Y (2.75) BS05 BCL N/A GO:0016020 ... N/A 35393413
    4569 7vy2:Z (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4570 7vy2:Z (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4571 7vy2:Z (2.75) BS05 BCL N/A GO:0016020 ... N/A 35393413
    4572 7vy2:a (2.75) BS01 BCL N/A GO:0016020 ... N/A 35393413
    4573 7vy2:a (2.75) BS03 BCL N/A GO:0016020 ... N/A 35393413
    4574 7vy2:a (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4575 7vy2:b (2.75) BS01 BCL N/A GO:0016020 ... N/A 35393413
    4576 7vy2:b (2.75) BS03 BCL N/A GO:0016020 ... N/A 35393413
    4577 7vy2:d (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4578 7vy2:d (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4579 7vy2:d (2.75) BS06 BCL N/A GO:0016020 ... N/A 35393413
    4580 7vy2:e (2.75) BS01 BCL N/A GO:0016020 ... N/A 35393413
    4581 7vy2:e (2.75) BS03 BCL N/A GO:0016020 ... N/A 35393413
    4582 7vy2:f (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4583 7vy2:f (2.75) BS05 BCL N/A GO:0016020 ... N/A 35393413
    4584 7vy2:f (2.75) BS06 BCL N/A GO:0016020 ... N/A 35393413
    4585 7vy2:g (2.75) BS01 BCL N/A GO:0016020 ... N/A 35393413
    4586 7vy2:g (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4587 7vy2:i (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4588 7vy2:i (2.75) BS03 BCL N/A GO:0016020 ... N/A 35393413
    4589 7vy2:i (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4590 7vy2:j (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4591 7vy2:j (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4592 7vy2:k (2.75) BS02 BCL N/A GO:0016020 ... N/A 35393413
    4593 7vy2:k (2.75) BS04 BCL N/A GO:0016020 ... N/A 35393413
    4594 7vy2:l (2.75) BS01 BCL N/A GO:0009772 ... N/A 35393413
    4595 7vy2:l (2.75) BS05 BCL N/A GO:0009772 ... N/A 35393413
    4596 7vy2:l (2.75) BS06 BCL N/A GO:0009772 ... N/A 35393413
    4597 7vy2:m (2.75) BS03 BCL N/A GO:0009772 ... N/A 35393413
    4598 7vy2:m (2.75) BS04 BCL N/A GO:0009772 ... N/A 35393413
    4599 7vy2:m (2.75) BS05 BCL N/A GO:0009772 ... N/A 35393413
    4600 7vy2:n (2.75) BS01 BCL N/A GO:0016020 ... N/A 35393413
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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