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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6160 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3801 7vb9:B (3.45) BS01 BCL ? GO:0005886 ... Q3J1A3 35418573
    3802 7vb9:B (3.45) BS02 BCL ? GO:0005886 ... Q3J1A3 35418573
    3803 7vb9:C (3.45) BS01 BCL ? GO:0005886 ... P13402 35418573
    3804 7vb9:D (3.45) BS01 BCL ? GO:0005886 ... Q3J1A4 35418573
    3805 7vb9:D (3.45) BS03 BCL ? GO:0005886 ... Q3J1A4 35418573
    3806 7vb9:D (3.45) BS04 BCL ? GO:0005886 ... Q3J1A4 35418573
    3807 7vb9:E (3.45) BS01 BCL ? GO:0005886 ... Q3J1A3 35418573
    3808 7vb9:E (3.45) BS03 BCL ? GO:0005886 ... Q3J1A3 35418573
    3809 7vb9:F (3.45) BS01 BCL ? GO:0005886 ... Q3J1A4 35418573
    3810 7vb9:F (3.45) BS04 BCL ? GO:0005886 ... Q3J1A4 35418573
    3811 7vb9:F (3.45) BS05 BCL ? GO:0005886 ... Q3J1A4 35418573
    3812 7vb9:G (3.45) BS01 BCL ? GO:0005886 ... Q3J1A3 35418573
    3813 7vb9:G (3.45) BS03 BCL ? GO:0005886 ... Q3J1A3 35418573
    3814 7vb9:I (3.45) BS02 BCL ? GO:0005886 ... Q3J1A4 35418573
    3815 7vb9:I (3.45) BS03 BCL ? GO:0005886 ... Q3J1A4 35418573
    3816 7vb9:J (3.45) BS02 BCL ? GO:0005886 ... Q3J1A3 35418573
    3817 7vb9:J (3.45) BS03 BCL ? GO:0005886 ... Q3J1A3 35418573
    3818 7vb9:K (3.45) BS01 BCL ? GO:0005886 ... Q3J1A4 35418573
    3819 7vb9:K (3.45) BS02 BCL ? GO:0005886 ... Q3J1A4 35418573
    3820 7vb9:L (3.45) BS01 BCL ? GO:0009772 ... Q3J1A5 35418573
    3821 7vb9:L (3.45) BS02 BCL ? GO:0009772 ... Q3J1A5 35418573
    3822 7vb9:L (3.45) BS05 BCL ? GO:0009772 ... Q3J1A5 35418573
    3823 7vb9:M (3.45) BS01 BCL ? GO:0009772 ... Q3J1A6 35418573
    3824 7vb9:M (3.45) BS03 BCL ? GO:0009772 ... Q3J1A6 35418573
    3825 7vb9:M (3.45) BS06 BCL ? GO:0009772 ... Q3J1A6 35418573
    3826 7vb9:N (3.45) BS02 BCL ? GO:0005886 ... Q3J1A3 35418573
    3827 7vb9:N (3.45) BS03 BCL ? GO:0005886 ... Q3J1A3 35418573
    3828 7vb9:O (3.45) BS01 BCL ? GO:0005886 ... Q3J1A4 35418573
    3829 7vb9:Q (3.45) BS02 BCL ? GO:0005886 ... Q3J1A4 35418573
    3830 7vb9:Q (3.45) BS04 BCL ? GO:0005886 ... Q3J1A4 35418573
    3831 7vb9:a (3.45) BS01 BCL ? GO:0005886 ... Q3J1A4 35418573
    3832 7vb9:a (3.45) BS03 BCL ? GO:0005886 ... Q3J1A4 35418573
    3833 7vb9:a (3.45) BS04 BCL ? GO:0005886 ... Q3J1A4 35418573
    3834 7vb9:aa (3.45) BS02 BCL ? GO:0005886 ... Q3J1A3 35418573
    3835 7vb9:aa (3.45) BS03 BCL ? GO:0005886 ... Q3J1A3 35418573
    3836 7vb9:ab (3.45) BS01 BCL ? GO:0005886 ... Q3J1A3 35418573
    3837 7vb9:ab (3.45) BS03 BCL ? GO:0005886 ... Q3J1A3 35418573
    3838 7vb9:b (3.45) BS01 BCL ? GO:0005886 ... Q3J1A3 35418573
    3839 7vb9:b (3.45) BS03 BCL ? GO:0005886 ... Q3J1A3 35418573
    3840 7vb9:c (3.45) BS02 BCL ? GO:0005886 ... P13402 35418573
    3841 7vb9:d (3.45) BS01 BCL ? GO:0005886 ... Q3J1A4 35418573
    3842 7vb9:d (3.45) BS03 BCL ? GO:0005886 ... Q3J1A4 35418573
    3843 7vb9:e (3.45) BS01 BCL ? GO:0005886 ... Q3J1A3 35418573
    3844 7vb9:e (3.45) BS04 BCL ? GO:0005886 ... Q3J1A3 35418573
    3845 7vb9:f (3.45) BS01 BCL ? GO:0005886 ... Q3J1A4 35418573
    3846 7vb9:f (3.45) BS04 BCL ? GO:0005886 ... Q3J1A4 35418573
    3847 7vb9:g (3.45) BS02 BCL ? GO:0005886 ... Q3J1A3 35418573
    3848 7vb9:g (3.45) BS04 BCL ? GO:0005886 ... Q3J1A3 35418573
    3849 7vb9:i (3.45) BS02 BCL ? GO:0005886 ... Q3J1A4 35418573
    3850 7vb9:i (3.45) BS03 BCL ? GO:0005886 ... Q3J1A4 35418573
    3851 7vb9:j (3.45) BS02 BCL ? GO:0005886 ... Q3J1A3 35418573
    3852 7vb9:j (3.45) BS03 BCL ? GO:0005886 ... Q3J1A3 35418573
    3853 7vb9:k (3.45) BS02 BCL ? GO:0005886 ... Q3J1A4 35418573
    3854 7vb9:k (3.45) BS03 BCL ? GO:0005886 ... Q3J1A4 35418573
    3855 7vb9:l (3.45) BS01 BCL ? GO:0009772 ... Q3J1A5 35418573
    3856 7vb9:l (3.45) BS04 BCL ? GO:0009772 ... Q3J1A5 35418573
    3857 7vb9:l (3.45) BS06 BCL ? GO:0009772 ... Q3J1A5 35418573
    3858 7vb9:m (3.45) BS02 BCL ? GO:0009772 ... Q3J1A6 35418573
    3859 7vb9:m (3.45) BS04 BCL ? GO:0009772 ... Q3J1A6 35418573
    3860 7vb9:m (3.45) BS06 BCL ? GO:0009772 ... Q3J1A6 35418573
    3861 7vb9:n (3.45) BS02 BCL ? GO:0005886 ... Q3J1A3 35418573
    3862 7vb9:n (3.45) BS03 BCL ? GO:0005886 ... Q3J1A3 35418573
    3863 7vb9:o (3.45) BS01 BCL ? GO:0005886 ... Q3J1A4 35418573
    3864 7vb9:o (3.45) BS03 BCL ? GO:0005886 ... Q3J1A4 35418573
    3865 7vb9:o (3.45) BS04 BCL ? GO:0005886 ... Q3J1A4 35418573
    3866 7vb9:p (3.45) BS01 BCL ? GO:0005886 ... Q3J1A3 35418573
    3867 7vb9:p (3.45) BS03 BCL ? GO:0005886 ... Q3J1A3 35418573
    3868 7vb9:q (3.45) BS01 BCL ? GO:0005886 ... Q3J1A4 35418573
    3869 7vb9:q (3.45) BS03 BCL ? GO:0005886 ... Q3J1A4 35418573
    3870 7vb9:q (3.45) BS04 BCL ? GO:0005886 ... Q3J1A4 35418573
    3871 7vb9:r (3.45) BS02 BCL ? GO:0005886 ... Q3J1A3 35418573
    3872 7vb9:r (3.45) BS04 BCL ? GO:0005886 ... Q3J1A3 35418573
    3873 7vb9:s (3.45) BS01 BCL ? GO:0005886 ... Q3J1A4 35418573
    3874 7vb9:s (3.45) BS03 BCL ? GO:0005886 ... Q3J1A4 35418573
    3875 7vb9:s (3.45) BS04 BCL ? GO:0005886 ... Q3J1A4 35418573
    3876 7vb9:t (3.45) BS01 BCL ? GO:0005886 ... Q3J1A3 35418573
    3877 7vb9:t (3.45) BS03 BCL ? GO:0005886 ... Q3J1A3 35418573
    3878 7vb9:u (3.45) BS01 BCL ? GO:0005886 ... Q3J1A4 35418573
    3879 7vb9:u (3.45) BS03 BCL ? GO:0005886 ... Q3J1A4 35418573
    3880 7vb9:u (3.45) BS04 BCL ? GO:0005886 ... Q3J1A4 35418573
    3881 7vb9:v (3.45) BS02 BCL ? GO:0005886 ... Q3J1A3 35418573
    3882 7vb9:w (3.45) BS01 BCL ? GO:0005886 ... Q3J1A4 35418573
    3883 7vb9:w (3.45) BS02 BCL ? GO:0005886 ... Q3J1A4 35418573
    3884 7vb9:x (3.45) BS01 BCL ? GO:0005886 ... Q3J1A3 35418573
    3885 7vb9:y (3.45) BS01 BCL ? GO:0005886 ... Q3J1A4 35418573
    3886 7vb9:z (3.45) BS01 BCL ? GO:0005886 ... Q3J1A3 35418573
    3887 7vb9:z (3.45) BS02 BCL ? GO:0005886 ... Q3J1A3 35418573
    3888 7vnm:0 (2.86) BS01 BCL ? GO:0005886 ... Q3J1A3 35418573
    3889 7vnm:0 (2.86) BS03 BCL ? GO:0005886 ... Q3J1A3 35418573
    3890 7vnm:1 (2.86) BS01 BCL ? GO:0005886 ... Q3J1A4 35418573
    3891 7vnm:1 (2.86) BS02 BCL ? GO:0005886 ... Q3J1A4 35418573
    3892 7vnm:2 (2.86) BS01 BCL ? GO:0005886 ... Q3J1A3 35418573
    3893 7vnm:2 (2.86) BS02 BCL ? GO:0005886 ... Q3J1A3 35418573
    3894 7vnm:7 (2.86) BS01 BCL ? GO:0005886 ... Q3J1A4 35418573
    3895 7vnm:7 (2.86) BS02 BCL ? GO:0005886 ... Q3J1A4 35418573
    3896 7vnm:8 (2.86) BS01 BCL ? GO:0005886 ... Q3J1A3 35418573
    3897 7vnm:8 (2.86) BS03 BCL ? GO:0005886 ... Q3J1A3 35418573
    3898 7vnm:9 (2.86) BS01 BCL ? GO:0005886 ... Q3J1A4 35418573
    3899 7vnm:9 (2.86) BS04 BCL ? GO:0005886 ... Q3J1A4 35418573
    3900 7vnm:9 (2.86) BS06 BCL ? GO:0005886 ... Q3J1A4 35418573
    3901 7vnm:A (2.86) BS01 BCL ? GO:0005886 ... Q3J1A4 35418573
    3902 7vnm:A (2.86) BS03 BCL ? GO:0005886 ... Q3J1A4 35418573
    3903 7vnm:B (2.86) BS01 BCL ? GO:0005886 ... Q3J1A3 35418573
    3904 7vnm:B (2.86) BS03 BCL ? GO:0005886 ... Q3J1A3 35418573
    3905 7vnm:B (2.86) BS04 BCL ? GO:0005886 ... Q3J1A3 35418573
    3906 7vnm:C (2.86) BS01 BCL ? GO:0005886 ... Q3J1A3 35418573
    3907 7vnm:C (2.86) BS02 BCL ? GO:0005886 ... Q3J1A3 35418573
    3908 7vnm:D (2.86) BS02 BCL ? GO:0005886 ... Q3J1A4 35418573
    3909 7vnm:D (2.86) BS06 BCL ? GO:0005886 ... Q3J1A4 35418573
    3910 7vnm:E (2.86) BS01 BCL ? GO:0005886 ... Q3J1A3 35418573
    3911 7vnm:E (2.86) BS04 BCL ? GO:0005886 ... Q3J1A3 35418573
    3912 7vnm:F (2.86) BS03 BCL ? GO:0005886 ... Q3J1A4 35418573
    3913 7vnm:F (2.86) BS04 BCL ? GO:0005886 ... Q3J1A4 35418573
    3914 7vnm:F (2.86) BS06 BCL ? GO:0005886 ... Q3J1A4 35418573
    3915 7vnm:G (2.86) BS03 BCL ? GO:0005886 ... Q3J1A3 35418573
    3916 7vnm:G (2.86) BS04 BCL ? GO:0005886 ... Q3J1A3 35418573
    3917 7vnm:I (2.86) BS02 BCL ? GO:0005886 ... Q3J1A4 35418573
    3918 7vnm:I (2.86) BS03 BCL ? GO:0005886 ... Q3J1A4 35418573
    3919 7vnm:J (2.86) BS02 BCL ? GO:0005886 ... Q3J1A3 35418573
    3920 7vnm:J (2.86) BS03 BCL ? GO:0005886 ... Q3J1A3 35418573
    3921 7vnm:K (2.86) BS01 BCL ? GO:0005886 ... Q3J1A4 35418573
    3922 7vnm:K (2.86) BS03 BCL ? GO:0005886 ... Q3J1A4 35418573
    3923 7vnm:L (2.86) BS01 BCL ? GO:0009772 ... Q3J1A5 35418573
    3924 7vnm:L (2.86) BS04 BCL ? GO:0009772 ... Q3J1A5 35418573
    3925 7vnm:L (2.86) BS06 BCL ? GO:0009772 ... Q3J1A5 35418573
    3926 7vnm:M (2.86) BS02 BCL ? GO:0009772 ... Q3J1A6 35418573
    3927 7vnm:M (2.86) BS04 BCL ? GO:0009772 ... Q3J1A6 35418573
    3928 7vnm:M (2.86) BS06 BCL ? GO:0009772 ... Q3J1A6 35418573
    3929 7vnm:N (2.86) BS02 BCL ? GO:0005886 ... Q3J1A3 35418573
    3930 7vnm:N (2.86) BS04 BCL ? GO:0005886 ... Q3J1A3 35418573
    3931 7vnm:O (2.86) BS03 BCL ? GO:0005886 ... Q3J1A4 35418573
    3932 7vnm:O (2.86) BS04 BCL ? GO:0005886 ... Q3J1A4 35418573
    3933 7vnm:P (2.86) BS02 BCL ? GO:0005886 ... Q3J1A3 35418573
    3934 7vnm:P (2.86) BS03 BCL ? GO:0005886 ... Q3J1A3 35418573
    3935 7vnm:Q (2.86) BS01 BCL ? GO:0005886 ... Q3J1A4 35418573
    3936 7vnm:Q (2.86) BS04 BCL ? GO:0005886 ... Q3J1A4 35418573
    3937 7vnm:R (2.86) BS02 BCL ? GO:0005886 ... Q3J1A3 35418573
    3938 7vnm:R (2.86) BS04 BCL ? GO:0005886 ... Q3J1A3 35418573
    3939 7vnm:S (2.86) BS03 BCL ? GO:0005886 ... Q3J1A4 35418573
    3940 7vnm:S (2.86) BS04 BCL ? GO:0005886 ... Q3J1A4 35418573
    3941 7vnm:T (2.86) BS02 BCL ? GO:0005886 ... Q3J1A3 35418573
    3942 7vnm:T (2.86) BS03 BCL ? GO:0005886 ... Q3J1A3 35418573
    3943 7vnm:T (2.86) BS04 BCL ? GO:0005886 ... Q3J1A3 35418573
    3944 7vnm:U (2.86) BS03 BCL ? GO:0005886 ... Q3J1A4 35418573
    3945 7vnm:U (2.86) BS04 BCL ? GO:0005886 ... Q3J1A4 35418573
    3946 7vnm:U (2.86) BS05 BCL ? GO:0005886 ... Q3J1A4 35418573
    3947 7vnm:V (2.86) BS02 BCL ? GO:0005886 ... Q3J1A3 35418573
    3948 7vnm:W (2.86) BS02 BCL ? GO:0005886 ... Q3J1A4 35418573
    3949 7vnm:W (2.86) BS03 BCL ? GO:0005886 ... Q3J1A4 35418573
    3950 7vny:0 (2.79) BS02 BCL ? GO:0005886 ... Q3J1A3 35418573
    3951 7vny:0 (2.79) BS04 BCL ? GO:0005886 ... Q3J1A3 35418573
    3952 7vny:1 (2.79) BS02 BCL ? GO:0005886 ... Q3J1A4 35418573
    3953 7vny:1 (2.79) BS03 BCL ? GO:0005886 ... Q3J1A4 35418573
    3954 7vny:2 (2.79) BS01 BCL ? GO:0005886 ... Q3J1A3 35418573
    3955 7vny:2 (2.79) BS02 BCL ? GO:0005886 ... Q3J1A3 35418573
    3956 7vny:3 (2.79) BS02 BCL ? GO:0005886 ... Q3J1A4 35418573
    3957 7vny:3 (2.79) BS04 BCL ? GO:0005886 ... Q3J1A4 35418573
    3958 7vny:7 (2.79) BS01 BCL ? GO:0005886 ... Q3J1A4 35418573
    3959 7vny:7 (2.79) BS02 BCL ? GO:0005886 ... Q3J1A4 35418573
    3960 7vny:8 (2.79) BS01 BCL ? GO:0005886 ... Q3J1A3 35418573
    3961 7vny:8 (2.79) BS02 BCL ? GO:0005886 ... Q3J1A3 35418573
    3962 7vny:9 (2.79) BS02 BCL ? GO:0005886 ... Q3J1A4 35418573
    3963 7vny:9 (2.79) BS04 BCL ? GO:0005886 ... Q3J1A4 35418573
    3964 7vny:A (2.79) BS01 BCL ? GO:0005886 ... Q3J1A4 35418573
    3965 7vny:A (2.79) BS02 BCL ? GO:0005886 ... Q3J1A4 35418573
    3966 7vny:B (2.79) BS01 BCL ? GO:0005886 ... Q3J1A3 35418573
    3967 7vny:B (2.79) BS02 BCL ? GO:0005886 ... Q3J1A3 35418573
    3968 7vny:B (2.79) BS04 BCL ? GO:0005886 ... Q3J1A3 35418573
    3969 7vny:C (2.79) BS01 BCL ? GO:0005886 ... Q3J1A3 35418573
    3970 7vny:C (2.79) BS03 BCL ? GO:0005886 ... Q3J1A3 35418573
    3971 7vny:C (2.79) BS04 BCL ? GO:0005886 ... Q3J1A3 35418573
    3972 7vny:D (2.79) BS02 BCL ? GO:0005886 ... Q3J1A4 35418573
    3973 7vny:D (2.79) BS04 BCL ? GO:0005886 ... Q3J1A4 35418573
    3974 7vny:E (2.79) BS01 BCL ? GO:0005886 ... Q3J1A3 35418573
    3975 7vny:E (2.79) BS03 BCL ? GO:0005886 ... Q3J1A3 35418573
    3976 7vny:F (2.79) BS02 BCL ? GO:0005886 ... Q3J1A4 35418573
    3977 7vny:F (2.79) BS04 BCL ? GO:0005886 ... Q3J1A4 35418573
    3978 7vny:G (2.79) BS02 BCL ? GO:0005886 ... Q3J1A3 35418573
    3979 7vny:G (2.79) BS04 BCL ? GO:0005886 ... Q3J1A3 35418573
    3980 7vny:I (2.79) BS02 BCL ? GO:0005886 ... Q3J1A4 35418573
    3981 7vny:I (2.79) BS05 BCL ? GO:0005886 ... Q3J1A4 35418573
    3982 7vny:J (2.79) BS02 BCL ? GO:0005886 ... Q3J1A3 35418573
    3983 7vny:J (2.79) BS04 BCL ? GO:0005886 ... Q3J1A3 35418573
    3984 7vny:J (2.79) BS05 BCL ? GO:0005886 ... Q3J1A3 35418573
    3985 7vny:K (2.79) BS03 BCL ? GO:0005886 ... Q3J1A4 35418573
    3986 7vny:K (2.79) BS04 BCL ? GO:0005886 ... Q3J1A4 35418573
    3987 7vny:L (2.79) BS01 BCL ? GO:0009772 ... Q3J1A5 35418573
    3988 7vny:L (2.79) BS02 BCL ? GO:0009772 ... Q3J1A5 35418573
    3989 7vny:L (2.79) BS05 BCL ? GO:0009772 ... Q3J1A5 35418573
    3990 7vny:M (2.79) BS01 BCL ? GO:0009772 ... Q3J1A6 35418573
    3991 7vny:M (2.79) BS03 BCL ? GO:0009772 ... Q3J1A6 35418573
    3992 7vny:M (2.79) BS05 BCL ? GO:0009772 ... Q3J1A6 35418573
    3993 7vny:N (2.79) BS03 BCL ? GO:0005886 ... Q3J1A3 35418573
    3994 7vny:N (2.79) BS04 BCL ? GO:0005886 ... Q3J1A3 35418573
    3995 7vny:N (2.79) BS05 BCL ? GO:0005886 ... Q3J1A3 35418573
    3996 7vny:O (2.79) BS01 BCL ? GO:0005886 ... Q3J1A4 35418573
    3997 7vny:O (2.79) BS03 BCL ? GO:0005886 ... Q3J1A4 35418573
    3998 7vny:P (2.79) BS01 BCL ? GO:0005886 ... Q3J1A3 35418573
    3999 7vny:P (2.79) BS03 BCL ? GO:0005886 ... Q3J1A3 35418573
    4000 7vny:P (2.79) BS04 BCL ? GO:0005886 ... Q3J1A3 35418573
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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