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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6160 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2601 7o0v:BK (2.5) BS02 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2602 7o0v:BK (2.5) BS04 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2603 7o0v:BL (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2604 7o0v:BL (2.5) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2605 7o0v:BM (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2606 7o0v:BM (2.5) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2607 7o0v:BN (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2608 7o0v:BN (2.5) BS02 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2609 7o0v:BN (2.5) BS04 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2610 7o0v:BO (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2611 7o0v:BO (2.5) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2612 7o0v:BP (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2613 7o0v:BP (2.5) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2614 7o0v:BQ (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2615 7o0v:BQ (2.5) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2616 7o0v:BR (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2617 7o0v:BR (2.5) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2618 7o0v:BS (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2619 7o0v:BS (2.5) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2620 7o0v:BT (2.5) BS02 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2621 7o0v:BT (2.5) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2622 7o0v:BT (2.5) BS04 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2623 7o0v:BU (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2624 7o0v:BU (2.5) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2625 7o0v:BV (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2626 7o0v:BV (2.5) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2627 7o0v:BW (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2628 7o0v:BW (2.5) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2629 7o0v:BX (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2630 7o0v:BX (2.5) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2631 7o0v:L (2.5) BS03 BCL ? GO:0009772 ... A0A143BHR2 35171663
    2632 7o0v:L (2.5) BS06 BCL ? GO:0009772 ... A0A143BHR2 35171663
    2633 7o0v:L (2.5) BS10 BCL ? GO:0009772 ... A0A143BHR2 35171663
    2634 7o0v:M (2.5) BS02 BCL N/A GO:0009772 ... N/A 35171663
    2635 7o0v:M (2.5) BS06 BCL N/A GO:0009772 ... N/A 35171663
    2636 7o0v:M (2.5) BS09 BCL N/A GO:0009772 ... N/A 35171663
    2637 7o0v:aa (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2638 7o0v:aa (2.5) BS03 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2639 7o0v:ab (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2640 7o0v:ab (2.5) BS04 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2641 7o0v:ac (2.5) BS02 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2642 7o0v:ac (2.5) BS04 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2643 7o0v:ad (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2644 7o0v:ad (2.5) BS02 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2645 7o0v:ad (2.5) BS04 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2646 7o0v:ae (2.5) BS02 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2647 7o0v:ae (2.5) BS03 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2648 7o0v:af (2.5) BS03 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2649 7o0v:af (2.5) BS05 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2650 7o0v:ag (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2651 7o0v:ag (2.5) BS05 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2652 7o0v:ah (2.5) BS02 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2653 7o0v:ah (2.5) BS05 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2654 7o0v:ai (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2655 7o0v:ai (2.5) BS05 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2656 7o0v:aj (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2657 7o0v:aj (2.5) BS02 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2658 7o0v:ak (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2659 7o0v:ak (2.5) BS04 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2660 7o0v:al (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2661 7o0v:al (2.5) BS03 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2662 7o0v:am (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2663 7o0v:am (2.5) BS04 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2664 7o0v:an (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2665 7o0v:an (2.5) BS05 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2666 7o0v:ao (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2667 7o0v:ao (2.5) BS04 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2668 7o0v:ap (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2669 7o0v:ap (2.5) BS05 BCL ? GO:0005886 ... A0A143BHS7 35171663
    2670 7o0v:ba (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2671 7o0v:ba (2.5) BS04 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2672 7o0v:bb (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2673 7o0v:bb (2.5) BS04 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2674 7o0v:bc (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2675 7o0v:bc (2.5) BS04 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2676 7o0v:bd (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2677 7o0v:bd (2.5) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2678 7o0v:be (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2679 7o0v:be (2.5) BS02 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2680 7o0v:be (2.5) BS06 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2681 7o0v:bf (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2682 7o0v:bf (2.5) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2683 7o0v:bg (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2684 7o0v:bg (2.5) BS04 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2685 7o0v:bh (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2686 7o0v:bh (2.5) BS05 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2687 7o0v:bi (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2688 7o0v:bi (2.5) BS04 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2689 7o0v:bj (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2690 7o0v:bj (2.5) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2691 7o0v:bk (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2692 7o0v:bk (2.5) BS04 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2693 7o0v:bl (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2694 7o0v:bl (2.5) BS02 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2695 7o0v:bl (2.5) BS05 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2696 7o0v:bm (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2697 7o0v:bm (2.5) BS05 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2698 7o0v:bn (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2699 7o0v:bn (2.5) BS02 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2700 7o0v:bn (2.5) BS05 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2701 7o0v:bo (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2702 7o0v:bo (2.5) BS04 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2703 7o0v:bp (2.5) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2704 7o0v:bp (2.5) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2705 7o0w:AA (2.47) BS01 BCL N/A GO:0016020 ... N/A 35171663
    2706 7o0w:AA (2.47) BS02 BCL N/A GO:0016020 ... N/A 35171663
    2707 7o0w:AA (2.47) BS04 BCL N/A GO:0016020 ... N/A 35171663
    2708 7o0w:AA (2.47) BS07 BCL N/A GO:0016020 ... N/A 35171663
    2709 7o0w:AB (2.47) BS02 BCL N/A GO:0016020 ... N/A 35171663
    2710 7o0w:AB (2.47) BS03 BCL N/A GO:0016020 ... N/A 35171663
    2711 7o0w:AB (2.47) BS04 BCL N/A GO:0016020 ... N/A 35171663
    2712 7o0w:AB (2.47) BS05 BCL N/A GO:0016020 ... N/A 35171663
    2713 7o0w:AC (2.47) BS02 BCL N/A GO:0016020 ... N/A 35171663
    2714 7o0w:AC (2.47) BS04 BCL N/A GO:0016020 ... N/A 35171663
    2715 7o0w:AC (2.47) BS05 BCL N/A GO:0016020 ... N/A 35171663
    2716 7o0w:AD (2.47) BS02 BCL N/A GO:0016020 ... N/A 35171663
    2717 7o0w:AD (2.47) BS03 BCL N/A GO:0016020 ... N/A 35171663
    2718 7o0w:AD (2.47) BS04 BCL N/A GO:0016020 ... N/A 35171663
    2719 7o0w:AD (2.47) BS06 BCL N/A GO:0016020 ... N/A 35171663
    2720 7o0w:AE (2.47) BS01 BCL N/A GO:0016020 ... N/A 35171663
    2721 7o0w:AE (2.47) BS02 BCL N/A GO:0016020 ... N/A 35171663
    2722 7o0w:AE (2.47) BS04 BCL N/A GO:0016020 ... N/A 35171663
    2723 7o0w:AF (2.47) BS01 BCL N/A GO:0016020 ... N/A 35171663
    2724 7o0w:AF (2.47) BS02 BCL N/A GO:0016020 ... N/A 35171663
    2725 7o0w:AF (2.47) BS04 BCL N/A GO:0016020 ... N/A 35171663
    2726 7o0w:AG (2.47) BS01 BCL N/A GO:0016020 ... N/A 35171663
    2727 7o0w:AG (2.47) BS02 BCL N/A GO:0016020 ... N/A 35171663
    2728 7o0w:AG (2.47) BS04 BCL N/A GO:0016020 ... N/A 35171663
    2729 7o0w:AH (2.47) BS01 BCL N/A GO:0016020 ... N/A 35171663
    2730 7o0w:AH (2.47) BS02 BCL N/A GO:0016020 ... N/A 35171663
    2731 7o0w:AH (2.47) BS03 BCL N/A GO:0016020 ... N/A 35171663
    2732 7o0w:AH (2.47) BS05 BCL N/A GO:0016020 ... N/A 35171663
    2733 7o0w:AI (2.47) BS01 BCL N/A GO:0016020 ... N/A 35171663
    2734 7o0w:AI (2.47) BS02 BCL N/A GO:0016020 ... N/A 35171663
    2735 7o0w:AI (2.47) BS04 BCL N/A GO:0016020 ... N/A 35171663
    2736 7o0w:AI (2.47) BS06 BCL N/A GO:0016020 ... N/A 35171663
    2737 7o0w:AJ (2.47) BS01 BCL N/A GO:0016020 ... N/A 35171663
    2738 7o0w:AJ (2.47) BS02 BCL N/A GO:0016020 ... N/A 35171663
    2739 7o0w:AJ (2.47) BS05 BCL N/A GO:0016020 ... N/A 35171663
    2740 7o0w:AK (2.47) BS01 BCL N/A GO:0016020 ... N/A 35171663
    2741 7o0w:AK (2.47) BS02 BCL N/A GO:0016020 ... N/A 35171663
    2742 7o0w:AK (2.47) BS03 BCL N/A GO:0016020 ... N/A 35171663
    2743 7o0w:AK (2.47) BS04 BCL N/A GO:0016020 ... N/A 35171663
    2744 7o0w:AK (2.47) BS07 BCL N/A GO:0016020 ... N/A 35171663
    2745 7o0w:AL (2.47) BS01 BCL N/A GO:0016020 ... N/A 35171663
    2746 7o0w:AL (2.47) BS02 BCL N/A GO:0016020 ... N/A 35171663
    2747 7o0w:AL (2.47) BS04 BCL N/A GO:0016020 ... N/A 35171663
    2748 7o0w:AM (2.47) BS01 BCL N/A GO:0016020 ... N/A 35171663
    2749 7o0w:AM (2.47) BS02 BCL N/A GO:0016020 ... N/A 35171663
    2750 7o0w:AM (2.47) BS03 BCL N/A GO:0016020 ... N/A 35171663
    2751 7o0w:AN (2.47) BS01 BCL N/A GO:0016020 ... N/A 35171663
    2752 7o0w:AN (2.47) BS02 BCL N/A GO:0016020 ... N/A 35171663
    2753 7o0w:AN (2.47) BS03 BCL N/A GO:0016020 ... N/A 35171663
    2754 7o0w:AN (2.47) BS04 BCL N/A GO:0016020 ... N/A 35171663
    2755 7o0w:AN (2.47) BS06 BCL N/A GO:0016020 ... N/A 35171663
    2756 7o0w:AO (2.47) BS01 BCL N/A GO:0016020 ... N/A 35171663
    2757 7o0w:AO (2.47) BS02 BCL N/A GO:0016020 ... N/A 35171663
    2758 7o0w:AO (2.47) BS03 BCL N/A GO:0016020 ... N/A 35171663
    2759 7o0w:AO (2.47) BS05 BCL N/A GO:0016020 ... N/A 35171663
    2760 7o0w:AP (2.47) BS01 BCL N/A GO:0016020 ... N/A 35171663
    2761 7o0w:AP (2.47) BS02 BCL N/A GO:0016020 ... N/A 35171663
    2762 7o0w:AP (2.47) BS03 BCL N/A GO:0016020 ... N/A 35171663
    2763 7o0w:AP (2.47) BS05 BCL N/A GO:0016020 ... N/A 35171663
    2764 7o0w:AQ (2.47) BS01 BCL N/A GO:0016020 ... N/A 35171663
    2765 7o0w:AQ (2.47) BS02 BCL N/A GO:0016020 ... N/A 35171663
    2766 7o0w:AQ (2.47) BS03 BCL N/A GO:0016020 ... N/A 35171663
    2767 7o0w:AQ (2.47) BS05 BCL N/A GO:0016020 ... N/A 35171663
    2768 7o0w:AQ (2.47) BS06 BCL N/A GO:0016020 ... N/A 35171663
    2769 7o0w:AR (2.47) BS01 BCL N/A GO:0016020 ... N/A 35171663
    2770 7o0w:AR (2.47) BS02 BCL N/A GO:0016020 ... N/A 35171663
    2771 7o0w:AR (2.47) BS03 BCL N/A GO:0016020 ... N/A 35171663
    2772 7o0w:AR (2.47) BS05 BCL N/A GO:0016020 ... N/A 35171663
    2773 7o0w:AS (2.47) BS01 BCL N/A GO:0016020 ... N/A 35171663
    2774 7o0w:AS (2.47) BS02 BCL N/A GO:0016020 ... N/A 35171663
    2775 7o0w:AS (2.47) BS04 BCL N/A GO:0016020 ... N/A 35171663
    2776 7o0w:AS (2.47) BS07 BCL N/A GO:0016020 ... N/A 35171663
    2777 7o0w:AT (2.47) BS02 BCL N/A GO:0016020 ... N/A 35171663
    2778 7o0w:AT (2.47) BS03 BCL N/A GO:0016020 ... N/A 35171663
    2779 7o0w:AT (2.47) BS04 BCL N/A GO:0016020 ... N/A 35171663
    2780 7o0w:AT (2.47) BS05 BCL N/A GO:0016020 ... N/A 35171663
    2781 7o0w:AU (2.47) BS01 BCL N/A GO:0016020 ... N/A 35171663
    2782 7o0w:AU (2.47) BS02 BCL N/A GO:0016020 ... N/A 35171663
    2783 7o0w:AU (2.47) BS03 BCL N/A GO:0016020 ... N/A 35171663
    2784 7o0w:AU (2.47) BS04 BCL N/A GO:0016020 ... N/A 35171663
    2785 7o0w:AV (2.47) BS01 BCL N/A GO:0016020 ... N/A 35171663
    2786 7o0w:AV (2.47) BS02 BCL N/A GO:0016020 ... N/A 35171663
    2787 7o0w:AV (2.47) BS03 BCL N/A GO:0016020 ... N/A 35171663
    2788 7o0w:AW (2.47) BS01 BCL N/A GO:0016020 ... N/A 35171663
    2789 7o0w:AW (2.47) BS02 BCL N/A GO:0016020 ... N/A 35171663
    2790 7o0w:AW (2.47) BS04 BCL N/A GO:0016020 ... N/A 35171663
    2791 7o0w:AW (2.47) BS06 BCL N/A GO:0016020 ... N/A 35171663
    2792 7o0w:AX (2.47) BS01 BCL N/A GO:0016020 ... N/A 35171663
    2793 7o0w:AX (2.47) BS02 BCL N/A GO:0016020 ... N/A 35171663
    2794 7o0w:AX (2.47) BS04 BCL N/A GO:0016020 ... N/A 35171663
    2795 7o0w:AX (2.47) BS05 BCL N/A GO:0016020 ... N/A 35171663
    2796 7o0w:AX (2.47) BS06 BCL N/A GO:0016020 ... N/A 35171663
    2797 7o0w:BA (2.47) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2798 7o0w:BA (2.47) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2799 7o0w:BB (2.47) BS02 BCL ? GO:0005886 ... A0A143BHS8 35171663
    2800 7o0w:BB (2.47) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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