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BioLiP
Download all results in tab-seperated text for 48 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3gn1:C (2.0) BS02 AX7 ? GO:0000166 ... O76290 19527033 MOAD: Ki=288uM
    BindingDB: Ki=288000nM
    2 3gn1:D (2.0) BS02 AX7 ? GO:0000166 ... O76290 19527033 MOAD: Ki=288uM
    BindingDB: Ki=288000nM
    3 3kqs:A (2.005) BS02 AX7 2.1.1.28 GO:0004603 ... P11086 20642456 MOAD: Kd=6.3uM
    PDBbind: -logKd/Ki=5.20, Kd=6.3uM
    4 3kqs:B (2.005) BS02 AX7 2.1.1.28 GO:0004603 ... P11086 20642456 MOAD: Kd=6.3uM
    5 5par:A (2.1) BS01 AX7 3.4.21.21 N/A P08709 N/A
    6 5par:C (2.1) BS02 AX7 3.4.21.21 GO:0004252 ... P08709 N/A
    7 5par:C (2.1) BS03 AX7 3.4.21.21 GO:0004252 ... P08709 N/A
    8 5z4h:A (2.0) BS02 AX7 5.6.2.2 GO:0003677 ... P0AES6 30429968
    9 5z4h:B (2.0) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 30429968
    10 5z4o:A (1.73) BS02 AX7 5.6.2.2 GO:0003677 ... P0AES6 30429968
    11 5z4o:B (1.73) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 30429968
    12 5z9b:A (2.1) BS02 AX7 5.6.2.2 GO:0003677 ... P0AES6 30429968
    13 5z9b:B (2.1) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 30429968
    14 5z9e:A (1.8) BS02 AX7 5.6.2.2 GO:0003677 ... P0AES6 30429968
    15 5z9e:B (1.8) BS02 AX7 5.6.2.2 GO:0003677 ... P0AES6 30429968
    16 5z9f:A (1.76) BS02 AX7 5.6.2.2 GO:0003677 ... P0AES6 30429968
    17 5z9f:B (1.76) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 30429968
    18 5z9l:A (1.6) BS02 AX7 5.6.2.2 GO:0003677 ... P0AES6 30429968
    19 5z9l:B (1.6) BS02 AX7 5.6.2.2 GO:0003677 ... P0AES6 30429968
    20 5z9p:A (1.45) BS01 AX7 5.6.2.2 GO:0003677 ... P0A0K8 30429968
    21 5z9p:B (1.45) BS01 AX7 5.6.2.2 GO:0003677 ... P0A0K8 30429968
    22 5z9q:A (1.8) BS02 AX7 5.6.2.2 GO:0003677 ... P0AES6 30429968
    23 5z9q:B (1.8) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 30429968
    24 6eq5:A (1.801) BS01 AX7 3.6.1.-
    3.6.1.56    		 GO:0001669 ... P36639 31077996 PDBbind: -logKd/Ki=4.74, Kd=18uM
    BindingDB: IC50=44000nM, Kd=18000nM
    25 7dor:A (1.89) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 34098257
    26 7dor:B (1.89) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 34098257
    27 7dpr:A (1.75) BS02 AX7 5.6.2.2 GO:0003677 ... P0AES6 34098257
    28 7dpr:B (1.75) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 34098257
    29 7dps:A (2.26) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 34098257
    30 7dps:B (2.26) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 34098257
    31 7dqf:A (1.8) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 34098257
    32 7dqf:B (1.8) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 34098257
    33 7dqh:A (1.91) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 34098257
    34 7dqh:B (1.91) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 34098257
    35 7dqi:A (1.91) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 34098257
    36 7dqi:B (1.91) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 34098257
    37 7dqj:A (1.92) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 34098257
    38 7dqj:B (1.92) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 34098257
    39 7dql:A (1.93) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 34098257
    40 7dql:B (1.93) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 34098257
    41 7dqm:A (1.78) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 34098257
    42 7dqm:B (1.78) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 34098257
    43 7dqs:A (1.85) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 34098257
    44 7dqs:B (1.85) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 34098257
    45 7dqu:A (1.88) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 34098257
    46 7dqu:B (1.88) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 34098257
    47 7dqw:A (1.88) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 34098257
    48 7dqw:B (1.88) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 34098257
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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