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BioLiP
Download all results in tab-seperated text for 5 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4er6:A (2.3) BS01 AW2 2.1.1.360 GO:0031151 ... Q8TEK3 23250418 BindingDB: Kd=0.060000nM, IC50=8.8nM, EC50=9.0nM
    2 7rfl:A (2.38) BS03 AW2 2.1.1.72 GO:0003676 ... Q183J3 34523387
    3 7rfl:B (2.38) BS03 AW2 2.1.1.72 GO:0003676 ... Q183J3 34523387
    4 7rfl:C (2.38) BS03 AW2 2.1.1.72 GO:0003676 ... Q183J3 34523387
    5 8frj:A (1.57) BS02 AW2 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004482 ... P0DTD1
    P41212    		 37523415
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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